Wall clock time and date at job start Tue Mar 31 2020 04:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46933 * 2 1 4 4 C 1.52998 * 109.47325 * 120.00259 * 2 1 3 5 5 C 1.52998 * 109.46902 * 174.55900 * 4 2 1 6 6 H 1.09004 * 109.47210 * 54.30855 * 5 4 2 7 7 C 1.50694 * 109.47399 * 294.30509 * 5 4 2 8 8 N 1.34768 * 120.00404 * 144.18226 * 7 5 4 9 9 O 1.21285 * 119.99862 * 324.18335 * 7 5 4 10 10 C 1.50706 * 109.47128 * 174.30356 * 5 4 2 11 11 O 1.21286 * 119.99702 * 359.97438 * 10 5 4 12 12 N 1.34770 * 119.99947 * 180.02562 * 10 5 4 13 13 C 1.46505 * 119.99917 * 180.02562 * 12 10 5 14 14 H 1.08999 * 110.63936 * 31.85110 * 13 12 10 15 15 C 1.54326 * 110.86658 * 268.60978 * 13 12 10 16 16 N 1.47297 * 107.30336 * 219.37791 * 15 13 12 17 17 C 1.36933 * 125.79209 * 178.92156 * 16 15 13 18 18 H 1.07998 * 120.00204 * 0.03443 * 17 16 15 19 19 C 1.38812 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00533 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47119 * 89.99842 * 21 19 17 23 23 H 1.48497 * 109.47419 * 210.00378 * 21 19 17 24 24 H 1.48506 * 109.46720 * 330.00339 * 21 19 17 25 25 C 1.47419 * 108.55729 * 358.93090 * 16 15 13 26 26 C 1.54913 * 104.93299 * 24.14974 * 25 16 15 27 27 H 1.08991 * 111.00726 * 204.86483 * 26 25 16 28 28 O 1.42899 * 111.00291 * 81.00886 * 26 25 16 29 29 H 1.09001 * 109.46983 * 299.99330 * 1 2 3 30 30 H 1.08993 * 109.47470 * 59.99969 * 1 2 3 31 31 H 1.09001 * 109.46859 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46983 * 240.00670 * 2 1 3 33 33 H 1.09002 * 109.47204 * 59.99911 * 3 2 1 34 34 H 1.08994 * 109.47672 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47327 * 300.00510 * 3 2 1 36 36 H 1.09000 * 109.47247 * 54.55937 * 4 2 1 37 37 H 1.09008 * 109.46980 * 294.55844 * 4 2 1 38 38 H 0.96998 * 120.00195 * 5.01036 * 8 7 5 39 39 H 0.97003 * 120.00165 * 185.01023 * 8 7 5 40 40 H 0.97001 * 120.00535 * 0.02562 * 12 10 5 41 41 H 1.08992 * 109.88562 * 338.78546 * 15 13 12 42 42 H 1.08999 * 109.88382 * 99.80165 * 15 13 12 43 43 H 0.97000 * 120.00201 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.36944 * 265.25744 * 25 16 15 45 45 H 1.09002 * 110.36818 * 143.04727 * 25 16 15 46 46 H 0.96702 * 113.99656 * 61.45714 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5639 -0.8408 1.1826 6 1 3.9996 0.1469 1.0309 7 6 3.9477 -1.7405 0.0362 8 7 5.0580 -1.4806 -0.6820 9 8 3.2572 -2.6985 -0.2402 10 6 4.0790 -1.4241 2.4732 11 8 3.3035 -1.7151 3.3592 12 7 5.4013 -1.6214 2.6431 13 6 5.9019 -2.1890 3.8975 14 1 5.1750 -2.8806 4.3235 15 6 6.2498 -1.0734 4.9055 16 7 7.4853 -1.4781 5.5978 17 6 8.1405 -0.7526 6.5567 18 1 7.7540 0.2074 6.8655 19 6 9.3013 -1.2511 7.1320 20 7 9.7725 -2.4210 6.7554 21 14 10.1947 -0.2618 8.4406 22 1 9.6698 -0.6262 9.7810 23 1 11.6482 -0.5598 8.3802 24 1 9.9761 1.1874 8.2007 25 6 7.8999 -2.7967 5.0853 26 6 7.2659 -2.8943 3.6752 27 1 7.1246 -3.9343 3.3814 28 8 8.0533 -2.1939 2.7101 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4427 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.5994 -1.7170 1.2992 37 1 1.7585 -0.1543 2.1366 38 1 5.6491 -0.7585 -0.4170 39 1 5.2662 -2.0156 -1.4639 40 1 6.0216 -1.3876 1.9350 41 1 6.4122 -0.1339 4.3773 42 1 5.4396 -0.9584 5.6255 43 1 10.5838 -2.7692 7.1571 44 1 7.5191 -3.5905 5.7281 45 1 8.9864 -2.8529 5.0175 46 1 8.9506 -2.5400 2.6087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221196297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:07 Heat of formation + Delta-G solvation = -141.242652 kcal Electronic energy + Delta-G solvation = -27435.940015 eV Core-core repulsion = 23552.502342 eV Total energy + Delta-G solvation = -3883.437673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84213 -40.34872 -39.28833 -37.30094 -36.34923 -35.60387 -34.74556 -33.62269 -32.28083 -30.28646 -28.78124 -28.00338 -26.67847 -25.70794 -23.23970 -22.36926 -21.70795 -21.31423 -20.49650 -19.28740 -18.64287 -18.22521 -18.21466 -17.81691 -16.95981 -16.81998 -16.15397 -16.03011 -15.90676 -15.58385 -15.02414 -14.94884 -14.83881 -14.65657 -14.41142 -14.26035 -13.67600 -13.50231 -13.20746 -13.19747 -13.00826 -12.96530 -12.74958 -12.56630 -12.28538 -12.13833 -11.92388 -11.85434 -11.76627 -11.60777 -11.56385 -11.25102 -11.00422 -10.86697 -10.73545 -10.70155 -10.18628 -8.91211 -7.80737 -5.24092 1.19665 1.47375 1.49073 1.51055 1.57724 1.99864 2.49112 2.53721 3.16004 3.30797 3.48534 3.52236 3.71065 3.82322 3.84970 3.93261 4.05552 4.11023 4.17390 4.27690 4.42291 4.47727 4.69997 4.74648 4.79507 4.85205 4.88035 4.93024 5.04092 5.07834 5.12918 5.29373 5.31968 5.40271 5.45322 5.46464 5.50452 5.69883 5.85092 6.24235 6.33221 6.43065 6.85670 7.07966 7.09180 7.23399 7.72326 8.35503 9.21417 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.003142 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.163483 B = 8910.200335 C = 9446.621683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.085 4.085 5 C -0.123 4.123 6 H 0.155 0.845 7 C 0.532 3.468 8 N -0.827 5.827 9 O -0.572 6.572 10 C 0.519 3.481 11 O -0.567 6.567 12 N -0.693 5.693 13 C 0.151 3.849 14 H 0.091 0.909 15 C 0.132 3.868 16 N -0.615 5.615 17 C -0.239 4.239 18 H 0.076 0.924 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.980 3.020 22 H -0.290 1.290 23 H -0.289 1.289 24 H -0.271 1.271 25 C 0.126 3.874 26 C 0.091 3.909 27 H 0.086 0.914 28 O -0.559 6.559 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.419 0.581 39 H 0.414 0.586 40 H 0.418 0.582 41 H 0.033 0.967 42 H 0.012 0.988 43 H 0.249 0.751 44 H -0.003 1.003 45 H 0.094 0.906 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 5.658 -19.055 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.123 4.123 5 C -0.147 4.147 6 H 0.173 0.827 7 C 0.315 3.685 8 N -0.392 5.392 9 O -0.451 6.451 10 C 0.305 3.695 11 O -0.445 6.445 12 N -0.345 5.345 13 C 0.044 3.956 14 H 0.109 0.891 15 C 0.006 3.994 16 N -0.342 5.342 17 C -0.368 4.368 18 H 0.094 0.906 19 C -0.253 4.253 20 N -0.596 5.596 21 Si 0.809 3.191 22 H -0.217 1.217 23 H -0.215 1.215 24 H -0.196 1.196 25 C 0.001 3.999 26 C 0.031 3.969 27 H 0.103 0.897 28 O -0.367 6.367 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.250 0.750 39 H 0.247 0.753 40 H 0.256 0.744 41 H 0.051 0.949 42 H 0.030 0.970 43 H 0.059 0.941 44 H 0.015 0.985 45 H 0.112 0.888 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.348 5.249 -18.405 21.758 hybrid contribution 1.601 -0.031 0.870 1.822 sum -8.747 5.218 -17.535 20.279 Atomic orbital electron populations 1.21799 0.94422 1.01560 1.02506 1.21115 0.96752 0.96907 0.96437 1.21949 1.01588 0.94523 1.02704 1.21344 0.89857 1.01534 0.99566 1.21672 1.00910 1.01861 0.90285 0.82730 1.20052 0.81143 0.84266 0.83017 1.43716 1.24702 1.38996 1.31819 1.90761 1.53796 1.30438 1.70110 1.20602 0.82229 0.77787 0.88912 1.90713 1.56853 1.51861 1.45062 1.45649 1.06970 1.63862 1.18032 1.21839 0.94087 0.94768 0.84888 0.89053 1.21672 0.88206 0.96328 0.93227 1.44592 1.25545 1.19350 1.44670 1.19396 1.04457 1.00440 1.12488 0.90597 1.25543 0.99050 0.98322 1.02402 1.69931 1.23924 1.19486 1.46232 0.85052 0.77360 0.78232 0.78497 1.21742 1.21535 1.19605 1.22510 1.01639 0.85679 0.90105 1.23220 0.89683 0.94529 0.89506 0.89662 1.86135 1.29659 1.61519 1.59406 0.92256 0.91279 0.93630 0.91836 0.92260 0.91577 0.91404 0.92767 0.90472 0.74957 0.75331 0.74441 0.94915 0.96992 0.94083 0.98534 0.88827 0.75303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.19 71.98 0.66 -1.70 16 2 C -0.09 -1.59 2.82 -10.79 -0.03 -1.62 16 3 C -0.15 -1.85 8.96 71.98 0.65 -1.21 16 4 C -0.08 -1.92 3.28 30.59 0.10 -1.82 16 5 C -0.12 -2.57 2.40 -12.29 -0.03 -2.60 16 6 H 0.16 2.02 6.32 -2.38 -0.02 2.00 16 7 C 0.53 11.13 5.83 87.66 0.51 11.65 16 8 N -0.83 -9.27 8.87 -173.54 -1.54 -10.81 16 9 O -0.57 -17.33 16.93 -3.04 -0.05 -17.38 16 10 C 0.52 15.38 7.14 87.66 0.63 16.00 16 11 O -0.57 -21.72 15.55 -3.05 -0.05 -21.77 16 12 N -0.69 -19.66 4.98 -436.91 -2.18 -21.84 16 13 C 0.15 5.41 3.19 46.18 0.15 5.56 16 14 H 0.09 3.54 7.55 -2.39 -0.02 3.52 16 15 C 0.13 5.73 7.01 86.68 0.61 6.34 16 16 N -0.62 -31.32 3.40 -691.30 -2.35 -33.67 16 17 C -0.24 -13.30 10.28 84.03 0.86 -12.43 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 20 N -0.95 -53.76 10.09 21.65 0.22 -53.54 16 21 Si 0.98 44.72 29.55 68.60 2.03 46.75 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 C 0.13 5.85 5.62 86.86 0.49 6.34 16 26 C 0.09 3.13 4.28 31.99 0.14 3.27 16 27 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 28 O -0.56 -16.39 12.25 -148.98 -1.82 -18.22 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.17 7.18 -2.39 -0.02 1.15 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.64 6.46 -2.39 -0.02 0.62 16 35 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 37 H 0.08 1.82 7.93 -2.38 -0.02 1.80 16 38 H 0.42 2.26 8.82 -92.71 -0.82 1.44 16 39 H 0.41 3.74 8.93 -92.71 -0.83 2.91 16 40 H 0.42 9.61 7.48 -92.71 -0.69 8.91 16 41 H 0.03 1.39 8.03 -2.39 -0.02 1.38 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 44 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 45 H 0.09 4.77 5.87 -2.39 -0.01 4.76 16 46 H 0.40 9.37 9.11 -74.06 -0.67 8.69 16 Total: -1.00 -76.34 371.08 -2.53 -78.87 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -1.98 Total: 26.71 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 5.19 Total: 24.90 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -5.85 Total: -119.86 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -1.92 Total: -57.37 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.34 -2.53 -78.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221196297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.371 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds