Wall clock time and date at job start Tue Mar 31 2020 04:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00351 * 2 1 4 4 H 1.09000 * 109.47205 * 30.00401 * 3 2 1 5 5 C 1.52993 * 109.47458 * 270.00079 * 3 2 1 6 6 C 1.50702 * 109.46948 * 150.00005 * 3 2 1 7 7 O 1.21283 * 120.00262 * 5.00336 * 6 3 2 8 8 N 1.34777 * 119.99928 * 184.72242 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 C 1.53117 * 109.52720 * 274.68866 * 9 8 6 11 11 C 1.53036 * 109.28089 * 182.43842 * 10 9 8 12 12 N 1.46846 * 109.52253 * 59.17908 * 11 10 9 13 13 C 1.46898 * 110.99761 * 174.16361 * 12 11 10 14 14 C 1.50707 * 109.47081 * 294.20226 * 13 12 11 15 15 O 1.21291 * 119.99658 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99954 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99608 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00457 * 0.02562 * 17 16 14 19 19 C 1.38961 * 120.00058 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99439 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47273 * 90.00229 * 21 19 17 23 23 H 1.48502 * 109.47076 * 209.99969 * 21 19 17 24 24 H 1.48501 * 109.47045 * 329.99727 * 21 19 17 25 25 C 1.46846 * 111.19752 * 298.25390 * 12 11 10 26 26 C 1.53038 * 109.52188 * 61.74511 * 25 12 11 27 27 H 1.09002 * 109.46489 * 300.00058 * 1 2 3 28 28 H 1.08997 * 109.46943 * 59.99229 * 1 2 3 29 29 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47175 * 300.00340 * 5 3 2 31 31 H 1.09003 * 109.46916 * 59.99893 * 5 3 2 32 32 H 1.08998 * 109.47766 * 179.97438 * 5 3 2 33 33 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 34 34 H 1.09007 * 109.51996 * 34.87658 * 9 8 6 35 35 H 1.09000 * 109.50111 * 302.37961 * 10 9 8 36 36 H 1.09002 * 109.50342 * 62.49268 * 10 9 8 37 37 H 1.09002 * 109.46102 * 299.15934 * 11 10 9 38 38 H 1.08998 * 109.45211 * 179.18697 * 11 10 9 39 39 H 1.08994 * 109.47512 * 54.20560 * 13 12 11 40 40 H 1.09005 * 109.46946 * 174.21029 * 13 12 11 41 41 H 0.97000 * 120.00399 * 0.02562 * 16 14 13 42 42 H 0.97005 * 119.99866 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.46758 * 301.73237 * 25 12 11 44 44 H 1.09002 * 109.45509 * 181.74863 * 25 12 11 45 45 H 1.09002 * 109.50849 * 180.87759 * 26 25 12 46 46 H 1.09005 * 109.50528 * 60.75886 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2178 1.7713 -1.4424 6 6 3.3387 1.2636 0.7104 7 8 3.7897 0.2042 1.0914 8 7 4.0282 2.4030 0.9175 9 6 5.3224 2.3618 1.6027 10 6 5.1011 2.4024 3.1173 11 6 6.4574 2.4206 3.8258 12 7 7.2215 3.5976 3.3930 13 6 8.4712 3.7232 4.1549 14 6 8.1520 4.0078 5.6000 15 8 6.9971 4.0968 5.9599 16 7 9.1499 4.1626 6.4926 17 6 8.8595 4.4210 7.8073 18 1 7.8312 4.5001 8.1278 19 6 9.8883 4.5810 8.7277 20 7 11.1395 4.4852 8.3376 21 14 9.4926 4.9324 10.5191 22 1 9.3650 3.6509 11.2584 23 1 10.5840 5.7424 11.1174 24 1 8.2144 5.6833 10.6056 25 6 7.4872 3.5567 1.9494 26 6 6.1616 3.5725 1.1848 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.8829 1.0774 -1.9563 31 1 1.2569 1.8014 -1.9562 32 1 2.6607 2.7672 -1.4425 33 1 3.6676 3.2504 0.6129 34 1 5.8474 1.4448 1.3348 35 1 4.5416 3.3004 3.3793 36 1 4.5405 1.5204 3.4269 37 1 7.0107 1.5157 3.5743 38 1 6.3032 2.4641 4.9040 39 1 9.0352 2.7933 4.0837 40 1 9.0652 4.5407 3.7462 41 1 10.0735 4.0911 6.2049 42 1 11.8577 4.5965 8.9801 43 1 8.0356 2.6466 1.7066 44 1 8.0809 4.4254 1.6648 45 1 6.3586 3.5264 0.1137 46 1 5.6187 4.4889 1.4164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226310634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:03 Heat of formation + Delta-G solvation = -114.328803 kcal Electronic energy + Delta-G solvation = -26284.698705 eV Core-core repulsion = 22402.428105 eV Total energy + Delta-G solvation = -3882.270601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38808 -39.10937 -38.03128 -37.29763 -34.98224 -33.84734 -32.58336 -31.27947 -30.85656 -30.66411 -27.21889 -27.13567 -24.95344 -24.07799 -23.10672 -22.41963 -20.57361 -19.84966 -19.16588 -17.83814 -17.67794 -17.30410 -16.19905 -15.97059 -15.71319 -15.37572 -14.96333 -14.83256 -14.70526 -14.49258 -13.95329 -13.74776 -13.68986 -13.47781 -13.19620 -13.07775 -13.02512 -12.78960 -12.29576 -12.20018 -11.87323 -11.67424 -11.53310 -11.47886 -11.15693 -11.07732 -11.04593 -10.63149 -10.50295 -10.37352 -10.32661 -10.19906 -9.67598 -9.46475 -9.12684 -8.41032 -7.95615 -7.81711 -6.39869 -3.80407 2.44414 2.62429 3.19145 3.27663 3.33501 3.63695 3.92554 4.00645 4.26211 4.33428 4.48970 4.58984 4.69472 4.89085 4.92478 4.99067 5.04870 5.08649 5.09889 5.25450 5.27396 5.31367 5.36136 5.45565 5.56737 5.63240 5.66613 5.71190 5.82777 5.85093 5.99297 6.02185 6.12787 6.26523 6.31961 6.47851 6.56286 6.66356 7.28580 7.35183 7.45014 7.57100 8.06701 8.08631 8.64079 9.20226 9.56858 10.08762 10.77912 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028662 B = 0.002270 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.677665 B =12329.542598 C =12962.041336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.068 3.932 4 H 0.087 0.913 5 C -0.170 4.170 6 C 0.513 3.487 7 O -0.517 6.517 8 N -0.723 5.723 9 C 0.144 3.856 10 C -0.120 4.120 11 C 0.055 3.945 12 N -0.516 5.516 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.577 6.577 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.058 3.942 26 C -0.119 4.119 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 -2.646 -20.648 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.007 3.993 4 H 0.104 0.896 5 C -0.227 4.227 6 C 0.297 3.703 7 O -0.392 6.392 8 N -0.375 5.375 9 C 0.040 3.960 10 C -0.159 4.159 11 C -0.073 4.073 12 N -0.241 5.241 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.461 6.461 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.071 4.071 26 C -0.158 4.158 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.233 0.767 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.125 0.875 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.851 -3.119 -19.919 25.040 hybrid contribution 0.611 0.115 0.405 0.742 sum -14.240 -3.004 -19.513 24.343 Atomic orbital electron populations 1.22890 0.80580 1.03322 1.00037 1.88060 1.19682 1.25114 1.94920 1.21950 0.93683 0.86960 0.96717 0.89572 1.22223 1.03422 1.02021 0.95066 1.20368 0.86168 0.84273 0.79473 1.90740 1.68916 1.29763 1.49734 1.46031 1.21918 1.09176 1.60402 1.21139 0.82790 0.99517 0.92540 1.21917 0.98055 1.02681 0.93251 1.22216 0.92737 0.89430 1.02906 1.61546 1.19136 1.41318 1.02078 1.21834 0.91112 1.01091 0.94480 1.19751 0.86294 0.84511 0.86506 1.90482 1.19935 1.55822 1.79885 1.41872 1.07831 1.62424 1.08034 1.19690 0.94868 1.45077 0.83077 0.87934 1.25264 0.94711 0.97539 1.00523 1.69614 0.98641 1.50227 1.35876 0.85860 0.78109 0.78428 0.81901 1.20449 1.20963 1.19433 1.22028 0.95875 1.00805 0.88390 1.21830 0.96429 0.98178 0.99322 0.93734 0.93856 0.89102 0.91040 0.91240 0.90865 0.76740 0.89738 0.90702 0.91428 0.95805 0.87516 0.93443 0.89316 0.77498 0.91913 0.94963 0.90273 0.91157 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.96 9.88 -55.09 -0.54 -4.50 16 3 C 0.07 0.59 3.13 -27.89 -0.09 0.51 16 4 H 0.09 0.54 7.79 -51.93 -0.40 0.14 16 5 C -0.17 -1.02 9.48 37.15 0.35 -0.67 16 6 C 0.51 6.12 7.15 -10.98 -0.08 6.05 16 7 O -0.52 -8.76 16.17 -14.31 -0.23 -8.99 16 8 N -0.72 -6.98 5.04 -53.68 -0.27 -7.25 16 9 C 0.14 1.70 2.52 -67.81 -0.17 1.53 16 10 C -0.12 -1.74 5.67 -26.65 -0.15 -1.89 16 11 C 0.06 0.93 5.10 -3.84 -0.02 0.91 16 12 N -0.52 -8.46 4.40 -236.12 -1.04 -9.50 16 13 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 14 C 0.44 10.44 7.46 -10.98 -0.08 10.36 16 15 O -0.58 -15.41 13.90 5.55 0.08 -15.34 16 16 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 20 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 21 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 26 C -0.12 -1.21 5.57 -26.65 -0.15 -1.35 16 27 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 28 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.07 0.30 7.91 -51.93 -0.41 -0.11 16 33 H 0.40 2.56 8.38 -40.82 -0.34 2.22 16 34 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 2.20 5.78 -51.93 -0.30 1.90 16 39 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 40 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.87 8.02 -51.93 -0.42 0.46 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -34.79 375.48 -7.84 -42.64 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.56 Total: 9.18 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 0.42 Total: 10.23 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.64 Total: -55.02 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.70 Total: -28.83 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.79 -7.84 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226310634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.691 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds