Wall clock time and date at job start Tue Mar 31 2020 04:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99570 * 2 1 4 4 C 1.50700 * 109.47302 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99512 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00626 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00412 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.47291 * 34.99846 * 7 6 4 9 9 C 1.53005 * 109.47121 * 275.00073 * 7 6 4 10 10 C 1.50697 * 109.47273 * 155.00210 * 7 6 4 11 11 O 1.21281 * 120.00253 * 14.19302 * 10 7 6 12 12 N 1.34778 * 120.00268 * 194.18795 * 10 7 6 13 13 C 1.46504 * 119.99554 * 3.68851 * 12 10 7 14 14 C 1.46498 * 120.00278 * 183.67673 * 12 10 7 15 15 C 1.53004 * 109.46797 * 95.52686 * 14 12 10 16 16 H 1.08996 * 112.96649 * 65.76063 * 15 14 12 17 17 C 1.53950 * 113.76868 * 294.08528 * 15 14 12 18 18 C 1.53940 * 86.29220 * 222.09015 * 17 15 14 19 19 N 1.47579 * 113.77207 * 197.44553 * 15 14 12 20 20 C 1.36940 * 134.48658 * 318.93250 * 19 15 14 21 21 H 1.07999 * 120.00384 * 5.63177 * 20 19 15 22 22 C 1.38817 * 119.99726 * 185.63687 * 20 19 15 23 23 N 1.31622 * 120.00060 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46896 * 89.99578 * 24 22 20 26 26 H 1.48497 * 109.47024 * 209.99962 * 24 22 20 27 27 H 1.48504 * 109.47055 * 330.00049 * 24 22 20 28 28 H 1.08996 * 109.47477 * 300.00018 * 1 2 3 29 29 H 1.09002 * 109.47183 * 60.00490 * 1 2 3 30 30 H 1.09008 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47275 * 59.99869 * 3 2 1 32 32 H 1.09000 * 109.47167 * 299.99856 * 3 2 1 33 33 H 0.97005 * 119.99500 * 0.02562 * 6 4 3 34 34 H 1.09006 * 109.46744 * 55.81688 * 9 7 6 35 35 H 1.08999 * 109.47098 * 295.81741 * 9 7 6 36 36 H 1.08999 * 109.47301 * 175.81327 * 9 7 6 37 37 H 1.08998 * 109.47487 * 84.89919 * 13 12 10 38 38 H 1.09007 * 109.46682 * 204.89791 * 13 12 10 39 39 H 1.08997 * 109.46984 * 324.89177 * 13 12 10 40 40 H 1.08999 * 109.47458 * 215.52363 * 14 12 10 41 41 H 1.08997 * 109.47179 * 335.53267 * 14 12 10 42 42 H 1.09004 * 113.74326 * 336.43985 * 17 15 14 43 43 H 1.08997 * 113.74381 * 107.63825 * 17 15 14 44 44 H 1.09002 * 113.77195 * 137.90197 * 18 17 15 45 45 H 1.08995 * 113.77284 * 269.19892 * 18 17 15 46 46 H 0.96993 * 119.99970 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1867 0.0006 5 8 4.0340 0.0917 0.0015 6 7 4.2764 2.2970 0.0002 7 6 5.7367 2.1814 0.0003 8 1 6.0326 1.3134 -0.5888 9 6 6.2352 2.0163 1.4374 10 6 6.3391 3.4252 -0.6006 11 8 5.6574 4.4167 -0.7526 12 7 7.6355 3.4359 -0.9690 13 6 8.4379 2.2149 -0.8605 14 6 8.2423 4.6684 -1.4780 15 6 8.9512 5.3976 -0.3349 16 1 9.8055 4.8455 0.0567 17 6 7.9970 5.9189 0.7549 18 6 8.8521 7.1990 0.7506 19 7 9.2408 6.8158 -0.6230 20 6 9.6885 7.4998 -1.7216 21 1 9.8214 6.9846 -2.6614 22 6 9.9717 8.8555 -1.6271 23 7 9.8095 9.4835 -0.4819 24 14 10.5832 9.7885 -3.1255 25 1 9.4238 10.3362 -3.8746 26 1 11.4623 10.9031 -2.6897 27 1 11.3494 8.8678 -4.0033 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8591 3.1727 -0.0001 34 1 5.7428 1.1591 1.8966 35 1 6.0047 2.9162 2.0076 36 1 7.3134 1.8560 1.4319 37 1 8.2958 1.6062 -1.7535 38 1 9.4910 2.4796 -0.7650 39 1 8.1240 1.6507 0.0176 40 1 8.9651 4.4231 -2.2561 41 1 7.4659 5.3111 -1.8928 42 1 6.9754 6.0724 0.4069 43 1 8.0482 5.3580 1.6880 44 1 8.2680 8.1178 0.8029 45 1 9.6772 7.1785 1.4625 46 1 10.0070 10.4308 -0.4160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234499052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:38 Heat of formation + Delta-G solvation = -46.672101 kcal Electronic energy + Delta-G solvation = -26815.975937 eV Core-core repulsion = 22936.639151 eV Total energy + Delta-G solvation = -3879.336786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64042 -39.53422 -37.92562 -37.55527 -35.39857 -35.08696 -32.18196 -31.54677 -28.99588 -28.28671 -27.81253 -26.68567 -26.21017 -24.22996 -23.25148 -22.28346 -20.71678 -19.48866 -18.97131 -17.99064 -17.20824 -16.76563 -16.62170 -16.52598 -15.88681 -15.66758 -15.43666 -14.96115 -14.67736 -14.52245 -14.08026 -13.85803 -13.60596 -13.45038 -13.22930 -12.77236 -12.70647 -12.48313 -12.32415 -12.28610 -11.85865 -11.83433 -11.70136 -11.36674 -11.03535 -10.87987 -10.70787 -10.42642 -10.18910 -10.06869 -9.89240 -9.81866 -9.69084 -9.48535 -9.32357 -8.78197 -8.40578 -6.84331 -5.74565 -3.06412 2.31274 2.40236 2.61449 3.12702 3.40240 3.44708 3.46642 3.74766 4.28107 4.45946 4.49412 4.73349 4.76825 4.87444 4.92275 4.95111 4.99578 5.02446 5.18636 5.28493 5.34264 5.39785 5.47481 5.52426 5.59041 5.64005 5.85471 5.93197 5.98464 6.08060 6.12537 6.35667 6.50635 6.57222 6.64906 6.74608 6.78859 7.25094 7.28564 7.40296 7.53236 7.61637 7.95475 8.00559 8.17850 9.06560 9.73519 10.64114 11.43203 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.002632 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.406769 B =10636.556527 C =10910.217528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.518 3.482 5 O -0.522 6.522 6 N -0.712 5.712 7 C 0.128 3.872 8 H 0.110 0.890 9 C -0.161 4.161 10 C 0.511 3.489 11 O -0.529 6.529 12 N -0.601 5.601 13 C 0.066 3.934 14 C 0.114 3.886 15 C 0.129 3.871 16 H 0.041 0.959 17 C -0.159 4.159 18 C 0.165 3.835 19 N -0.601 5.601 20 C -0.223 4.223 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 -18.073 3.347 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.303 3.697 5 O -0.397 6.397 6 N -0.368 5.368 7 C 0.020 3.980 8 H 0.127 0.873 9 C -0.220 4.220 10 C 0.297 3.703 11 O -0.405 6.405 12 N -0.334 5.334 13 C -0.077 4.077 14 C -0.009 4.009 15 C 0.021 3.979 16 H 0.059 0.941 17 C -0.197 4.197 18 C 0.040 3.960 19 N -0.327 5.327 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.173 -18.204 3.073 22.679 hybrid contribution 0.273 1.240 -0.787 1.493 sum -12.900 -16.964 2.286 21.434 Atomic orbital electron populations 1.22850 0.80247 1.03342 1.00258 1.88004 1.19878 1.25154 1.95470 1.22210 0.91306 0.87046 1.03062 1.20220 0.88751 0.84327 0.76407 1.90728 1.74555 1.26414 1.48004 1.45662 1.05638 1.09814 1.75668 1.20765 0.80880 0.97676 0.98717 0.87266 1.22193 1.02178 1.03452 0.94143 1.20387 0.82323 0.89234 0.78366 1.90709 1.60159 1.35189 1.54485 1.47713 1.09750 1.11967 1.64005 1.22041 0.97073 0.86683 1.01917 1.21888 0.98049 0.84120 0.96834 1.22502 0.94331 0.88174 0.92938 0.94129 1.23806 0.99758 0.99342 0.96785 1.22132 0.93431 0.94962 0.85490 1.46012 1.77740 0.99832 1.09112 1.18971 1.37227 0.91154 0.87684 0.90399 1.24803 1.01815 0.96758 0.97028 1.69835 1.54029 1.09286 1.23500 0.86162 0.78368 0.79627 0.81849 1.21549 1.21688 1.20719 0.93710 0.93710 0.89058 0.89920 0.89900 0.75063 0.90855 0.91332 0.90334 0.92439 0.90191 0.90744 0.91242 0.88736 0.89854 0.93883 0.91657 0.95586 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.85 10.24 -55.14 -0.56 -4.41 16 3 C 0.04 0.37 6.42 36.01 0.23 0.60 16 4 C 0.52 5.94 7.87 -10.99 -0.09 5.85 16 5 O -0.52 -7.94 16.16 -14.36 -0.23 -8.17 16 6 N -0.71 -7.63 5.02 -54.94 -0.28 -7.90 16 7 C 0.13 1.45 2.15 -69.08 -0.15 1.30 16 8 H 0.11 1.23 6.90 -51.93 -0.36 0.87 16 9 C -0.16 -1.59 9.22 37.16 0.34 -1.24 16 10 C 0.51 7.21 6.53 -10.99 -0.07 7.13 16 11 O -0.53 -9.19 14.05 5.56 0.08 -9.11 16 12 N -0.60 -8.24 2.80 -181.57 -0.51 -8.74 16 13 C 0.07 0.64 9.88 59.85 0.59 1.23 16 14 C 0.11 1.99 5.40 -4.04 -0.02 1.97 16 15 C 0.13 2.57 4.57 -66.86 -0.31 2.27 16 16 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.16 -3.15 7.31 -25.79 -0.19 -3.33 16 18 C 0.16 4.00 7.39 -2.85 -0.02 3.98 16 19 N -0.60 -15.37 3.58 -169.74 -0.61 -15.98 16 20 C -0.22 -6.21 10.51 -15.06 -0.16 -6.36 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.65 11.55 55.49 0.64 -27.01 16 24 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.41 4.08 7.72 -40.82 -0.31 3.76 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.67 5.84 -51.93 -0.30 0.37 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 39 H 0.07 0.59 4.57 -51.93 -0.24 0.35 16 40 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 41 H 0.09 1.94 7.22 -51.93 -0.37 1.56 16 42 H 0.08 1.76 6.80 -51.93 -0.35 1.40 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.75 7.44 -51.93 -0.39 1.36 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -35.92 376.36 -7.00 -42.93 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.36 Total: 1.10 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 1.18 Total: 14.38 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.75 Total: -59.64 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.72 Total: -21.69 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.92 -7.00 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234499052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.746 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds