Wall clock time and date at job start Tue Mar 31 2020 04:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99570 * 2 1 4 4 C 1.50700 * 109.47302 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99512 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00626 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00412 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.47291 * 34.99846 * 7 6 4 9 9 C 1.53005 * 109.47121 * 275.00073 * 7 6 4 10 10 C 1.50697 * 109.47273 * 155.00210 * 7 6 4 11 11 O 1.21281 * 120.00253 * 14.19302 * 10 7 6 12 12 N 1.34778 * 120.00268 * 194.18795 * 10 7 6 13 13 C 1.46504 * 119.99554 * 3.68851 * 12 10 7 14 14 C 1.46498 * 120.00278 * 183.67673 * 12 10 7 15 15 C 1.53004 * 109.46797 * 95.52686 * 14 12 10 16 16 H 1.08996 * 112.96649 * 65.76063 * 15 14 12 17 17 C 1.53950 * 113.76868 * 294.08528 * 15 14 12 18 18 C 1.53940 * 86.29220 * 222.09015 * 17 15 14 19 19 N 1.47579 * 113.77207 * 197.44553 * 15 14 12 20 20 C 1.36940 * 134.48658 * 318.93250 * 19 15 14 21 21 H 1.07999 * 120.00384 * 5.63177 * 20 19 15 22 22 C 1.38817 * 119.99726 * 185.63687 * 20 19 15 23 23 N 1.31622 * 120.00060 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46896 * 89.99578 * 24 22 20 26 26 H 1.48497 * 109.47024 * 209.99962 * 24 22 20 27 27 H 1.48504 * 109.47055 * 330.00049 * 24 22 20 28 28 H 1.08996 * 109.47477 * 300.00018 * 1 2 3 29 29 H 1.09002 * 109.47183 * 60.00490 * 1 2 3 30 30 H 1.09008 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47275 * 59.99869 * 3 2 1 32 32 H 1.09000 * 109.47167 * 299.99856 * 3 2 1 33 33 H 0.97005 * 119.99500 * 0.02562 * 6 4 3 34 34 H 1.09006 * 109.46744 * 55.81688 * 9 7 6 35 35 H 1.08999 * 109.47098 * 295.81741 * 9 7 6 36 36 H 1.08999 * 109.47301 * 175.81327 * 9 7 6 37 37 H 1.08998 * 109.47487 * 84.89919 * 13 12 10 38 38 H 1.09007 * 109.46682 * 204.89791 * 13 12 10 39 39 H 1.08997 * 109.46984 * 324.89177 * 13 12 10 40 40 H 1.08999 * 109.47458 * 215.52363 * 14 12 10 41 41 H 1.08997 * 109.47179 * 335.53267 * 14 12 10 42 42 H 1.09004 * 113.74326 * 336.43985 * 17 15 14 43 43 H 1.08997 * 113.74381 * 107.63825 * 17 15 14 44 44 H 1.09002 * 113.77195 * 137.90197 * 18 17 15 45 45 H 1.08995 * 113.77284 * 269.19892 * 18 17 15 46 46 H 0.96993 * 119.99970 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1867 0.0006 5 8 4.0340 0.0917 0.0015 6 7 4.2764 2.2970 0.0002 7 6 5.7367 2.1814 0.0003 8 1 6.0326 1.3134 -0.5888 9 6 6.2352 2.0163 1.4374 10 6 6.3391 3.4252 -0.6006 11 8 5.6574 4.4167 -0.7526 12 7 7.6355 3.4359 -0.9690 13 6 8.4379 2.2149 -0.8605 14 6 8.2423 4.6684 -1.4780 15 6 8.9512 5.3976 -0.3349 16 1 9.8055 4.8455 0.0567 17 6 7.9970 5.9189 0.7549 18 6 8.8521 7.1990 0.7506 19 7 9.2408 6.8158 -0.6230 20 6 9.6885 7.4998 -1.7216 21 1 9.8214 6.9846 -2.6614 22 6 9.9717 8.8555 -1.6271 23 7 9.8095 9.4835 -0.4819 24 14 10.5832 9.7885 -3.1255 25 1 9.4238 10.3362 -3.8746 26 1 11.4623 10.9031 -2.6897 27 1 11.3494 8.8678 -4.0033 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8591 3.1727 -0.0001 34 1 5.7428 1.1591 1.8966 35 1 6.0047 2.9162 2.0076 36 1 7.3134 1.8560 1.4319 37 1 8.2958 1.6062 -1.7535 38 1 9.4910 2.4796 -0.7650 39 1 8.1240 1.6507 0.0176 40 1 8.9651 4.4231 -2.2561 41 1 7.4659 5.3111 -1.8928 42 1 6.9754 6.0724 0.4069 43 1 8.0482 5.3580 1.6880 44 1 8.2680 8.1178 0.8029 45 1 9.6772 7.1785 1.4625 46 1 10.0070 10.4308 -0.4160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234499052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:38 Heat of formation + Delta-G solvation = -72.872664 kcal Electronic energy + Delta-G solvation = -26817.112079 eV Core-core repulsion = 22936.639151 eV Total energy + Delta-G solvation = -3880.472927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67721 -40.57249 -39.43797 -38.39698 -36.59217 -36.06236 -34.22762 -32.49581 -29.98124 -29.82859 -29.25484 -27.64109 -26.78528 -25.47454 -25.11478 -23.69804 -21.62116 -20.90897 -20.43181 -18.95300 -18.58226 -18.05557 -17.57223 -17.27065 -17.07649 -16.80867 -16.64888 -16.22920 -15.83550 -15.71354 -15.57088 -15.19140 -14.66021 -14.49698 -14.12815 -14.02390 -13.88394 -13.54818 -13.48152 -13.32912 -13.17311 -12.95392 -12.80563 -12.58825 -12.52970 -12.46071 -12.33497 -12.23883 -11.82304 -11.58032 -11.25947 -10.99177 -10.85685 -10.84639 -10.75867 -10.27178 -9.66603 -8.87783 -7.89274 -5.21683 1.41885 1.44371 1.47063 1.52667 1.54998 1.57098 2.11780 2.49806 3.10977 3.25227 3.34975 3.49165 3.71048 3.91343 4.01954 4.05225 4.20613 4.21436 4.26677 4.28167 4.32246 4.49168 4.53048 4.58994 4.60083 4.68133 4.76228 4.81902 4.86023 4.88963 4.93123 5.02209 5.10499 5.21594 5.23587 5.26805 5.47685 5.54666 5.74644 5.94931 6.01896 6.35249 6.43851 6.92642 7.05606 7.11510 7.63035 8.59617 9.29013 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025074 B = 0.002632 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.406769 B =10636.556527 C =10910.217528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.044 3.956 4 C 0.516 3.484 5 O -0.564 6.564 6 N -0.708 5.708 7 C 0.134 3.866 8 H 0.114 0.886 9 C -0.155 4.155 10 C 0.509 3.491 11 O -0.566 6.566 12 N -0.599 5.599 13 C 0.059 3.941 14 C 0.129 3.871 15 C 0.135 3.865 16 H 0.061 0.939 17 C -0.131 4.131 18 C 0.158 3.842 19 N -0.631 5.631 20 C -0.225 4.225 21 H 0.087 0.913 22 C -0.073 4.073 23 N -0.957 5.957 24 Si 0.976 3.024 25 H -0.289 1.289 26 H -0.296 1.296 27 H -0.265 1.265 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.417 0.583 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.028 0.972 45 H 0.021 0.979 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.702 -20.046 3.091 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.035 4.035 4 C 0.304 3.696 5 O -0.442 6.442 6 N -0.363 5.363 7 C 0.026 3.974 8 H 0.132 0.868 9 C -0.214 4.214 10 C 0.297 3.703 11 O -0.445 6.445 12 N -0.331 5.331 13 C -0.082 4.082 14 C 0.005 3.995 15 C 0.029 3.971 16 H 0.079 0.921 17 C -0.169 4.169 18 C 0.033 3.967 19 N -0.357 5.357 20 C -0.353 4.353 21 H 0.104 0.896 22 C -0.265 4.265 23 N -0.606 5.606 24 Si 0.805 3.195 25 H -0.216 1.216 26 H -0.223 1.223 27 H -0.190 1.190 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.255 0.745 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.047 0.953 45 H 0.038 0.962 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.447 -20.233 2.813 24.456 hybrid contribution 0.308 1.783 -0.687 1.936 sum -13.139 -18.449 2.125 22.749 Atomic orbital electron populations 1.23042 0.78273 1.04237 1.01604 1.87948 1.22117 1.26399 1.95800 1.22332 0.88933 0.86909 1.05323 1.20798 0.90089 0.83589 0.75173 1.90702 1.75516 1.27837 1.50135 1.45691 1.05511 1.10015 1.75111 1.20751 0.81209 0.95968 0.99503 0.86781 1.22168 1.03239 1.03226 0.92727 1.20883 0.82179 0.89586 0.77660 1.90700 1.61120 1.36788 1.55928 1.47716 1.10025 1.11906 1.63450 1.22336 0.96976 0.85134 1.03778 1.21424 0.96970 0.85152 0.95996 1.22666 0.94762 0.86071 0.93613 0.92114 1.23503 0.98163 0.96881 0.98331 1.22073 0.93722 0.95526 0.85379 1.46378 1.77716 1.02716 1.08936 1.19394 1.35463 0.91607 0.88881 0.89552 1.25661 1.03102 0.97935 0.99849 1.70028 1.55961 1.09027 1.25618 0.85109 0.77607 0.78148 0.78682 1.21607 1.22270 1.18959 0.92199 0.92466 0.88530 0.87231 0.87792 0.74539 0.90790 0.91744 0.88634 0.90821 0.89332 0.88646 0.90093 0.92216 0.91205 0.90460 0.95313 0.96163 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -7.91 10.24 -129.94 -1.33 -9.24 16 3 C 0.04 0.66 6.42 71.24 0.46 1.12 16 4 C 0.52 11.16 7.87 87.66 0.69 11.85 16 5 O -0.56 -16.67 16.16 16.00 0.26 -16.41 16 6 N -0.71 -14.11 5.02 -446.11 -2.24 -16.35 16 7 C 0.13 2.77 2.15 44.25 0.10 2.86 16 8 H 0.11 2.30 6.90 -2.39 -0.02 2.28 16 9 C -0.16 -2.66 9.22 71.98 0.66 -2.00 16 10 C 0.51 13.55 6.53 87.66 0.57 14.13 16 11 O -0.57 -19.39 14.05 -3.03 -0.04 -19.44 16 12 N -0.60 -15.05 2.80 -846.75 -2.37 -17.43 16 13 C 0.06 0.94 9.88 127.77 1.26 2.20 16 14 C 0.13 4.32 5.40 86.38 0.47 4.79 16 15 C 0.14 5.22 4.57 45.10 0.21 5.42 16 16 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 17 C -0.13 -5.05 7.31 31.25 0.23 -4.83 16 18 C 0.16 7.83 7.39 86.43 0.64 8.47 16 19 N -0.63 -32.42 3.58 -690.93 -2.47 -34.89 16 20 C -0.23 -12.60 10.51 84.03 0.88 -11.71 16 21 H 0.09 4.55 7.83 -2.91 -0.02 4.52 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 23 N -0.96 -59.30 11.55 21.65 0.25 -59.05 16 24 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.42 7.71 7.72 -92.70 -0.72 6.99 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.29 5.84 -2.39 -0.01 1.27 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.30 8.03 -2.38 -0.02 1.28 16 39 H 0.10 1.13 4.57 -2.39 -0.01 1.12 16 40 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 41 H 0.06 2.45 7.22 -2.39 -0.02 2.43 16 42 H 0.07 2.93 6.80 -2.38 -0.02 2.91 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.03 1.60 7.44 -2.39 -0.02 1.58 16 45 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -80.23 376.36 2.22 -78.01 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.27 Total: 16.35 kcal Atomic # 6 Polarization: 22.16 SS G_CDS: 7.88 Total: 30.04 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -6.84 Total: -127.73 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.11 Total: -45.08 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -80.23 2.22 -78.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234499052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.134 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds