Wall clock time and date at job start Tue Mar 31 2020 04:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21278 * 119.99985 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.62638 * 359.71455 * 5 3 2 7 7 C 1.52765 * 109.00862 * 233.58544 * 6 5 3 8 8 C 1.53035 * 109.38268 * 305.59133 * 7 6 5 9 9 O 1.42901 * 109.45146 * 301.22521 * 8 7 6 10 10 C 1.53002 * 109.45725 * 181.25838 * 8 7 6 11 11 N 1.46902 * 109.47104 * 59.93714 * 10 8 7 12 12 C 1.46901 * 111.00064 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47046 * 179.97438 * 12 11 10 14 14 O 1.21291 * 119.99898 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99764 * 179.97438 * 13 12 11 16 16 C 1.37100 * 119.99950 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99463 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00124 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47295 * 90.00029 * 20 18 16 22 22 H 1.48503 * 109.46942 * 209.99980 * 20 18 16 23 23 H 1.48497 * 109.47106 * 329.99541 * 20 18 16 24 24 C 1.53043 * 109.53810 * 61.23936 * 8 7 6 25 25 C 1.46920 * 120.63268 * 180.02562 * 5 3 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.09000 * 109.59185 * 353.42700 * 6 5 3 32 32 H 1.09004 * 109.58365 * 113.84987 * 6 5 3 33 33 H 1.09003 * 109.56176 * 185.55325 * 7 6 5 34 34 H 1.09000 * 109.36023 * 65.50261 * 7 6 5 35 35 H 0.96703 * 113.99704 * 300.06478 * 9 8 7 36 36 H 1.09006 * 109.46980 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47486 * 299.93143 * 10 8 7 38 38 H 1.00892 * 111.00383 * 56.04117 * 11 10 8 39 39 H 1.08996 * 109.47179 * 299.99656 * 12 11 10 40 40 H 1.09003 * 109.46748 * 59.99418 * 12 11 10 41 41 H 0.97001 * 120.00072 * 0.02562 * 15 13 12 42 42 H 0.97005 * 120.00046 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.49283 * 178.67961 * 24 8 7 44 44 H 1.09005 * 109.49595 * 58.58664 * 24 8 7 45 45 H 1.09006 * 109.58607 * 246.15487 * 25 5 3 46 46 H 1.09000 * 109.58547 * 6.57598 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3244 0.5610 0.0052 7 6 5.2968 0.7562 1.1671 8 6 5.9311 2.1456 1.0706 9 8 6.6121 2.2720 -0.1793 10 6 6.9287 2.3311 2.2157 11 7 7.9764 1.3054 2.1233 12 6 8.9549 1.4531 3.2090 13 6 10.0112 0.3858 3.0818 14 8 9.9547 -0.4183 2.1756 15 7 11.0192 0.3256 3.9745 16 6 11.9799 -0.6456 3.8591 17 1 11.9291 -1.3622 3.0527 18 6 13.0188 -0.7081 4.7797 19 7 13.0802 0.1636 5.7612 20 14 14.3281 -2.0309 4.6221 21 1 15.4398 -1.5288 3.7752 22 1 14.8489 -2.3750 5.9696 23 1 13.7366 -3.2408 3.9963 24 6 4.8398 3.2143 1.1670 25 6 3.8623 3.0469 0.0000 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.7968 -0.3850 0.1270 32 1 4.8779 0.5548 -0.9338 33 1 6.0768 -0.0038 1.1218 34 1 4.7562 0.6677 2.1095 35 1 7.3188 1.6249 -0.3094 36 1 7.3810 3.3205 2.1469 37 1 6.4094 2.2352 3.1692 38 1 8.4297 1.3317 1.2224 39 1 9.4216 2.4361 3.1463 40 1 8.4498 1.3514 4.1696 41 1 11.0645 0.9690 4.6990 42 1 13.8056 0.1203 6.4037 43 1 5.2947 4.2038 1.1217 44 1 4.3035 3.1026 2.1094 45 1 4.3773 3.2480 -0.9394 46 1 3.0298 3.7406 0.1185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484946349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:42 Heat of formation + Delta-G solvation = -128.303452 kcal Electronic energy + Delta-G solvation = -26410.438370 eV Core-core repulsion = 22527.561783 eV Total energy + Delta-G solvation = -3882.876587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64673 -39.05759 -38.18462 -35.95529 -34.69656 -33.83604 -33.32831 -31.91485 -31.29166 -31.18063 -28.26217 -26.10702 -24.81658 -23.80652 -23.51481 -22.13047 -20.61559 -19.38556 -19.12767 -17.99865 -17.53717 -16.90997 -16.17664 -16.04319 -15.88103 -15.63327 -14.92575 -14.65109 -14.44625 -14.38228 -14.16885 -13.99491 -13.69471 -13.24969 -13.18585 -13.09266 -12.79458 -12.55130 -12.25967 -12.14295 -11.92210 -11.84933 -11.61687 -11.56790 -11.45508 -11.40382 -11.35756 -11.08329 -10.56752 -10.43523 -10.26973 -10.12984 -9.89541 -9.56399 -8.82516 -8.55304 -8.19492 -8.02191 -6.46880 -3.88095 2.43561 2.78945 3.14018 3.23240 3.28758 3.83479 3.92697 4.04076 4.21062 4.25944 4.48747 4.64203 4.75542 4.77520 4.80436 4.88192 5.01503 5.08072 5.14833 5.19894 5.25302 5.34565 5.43132 5.47896 5.53617 5.56989 5.62155 5.64974 5.71701 5.76502 5.77466 5.88116 5.93444 6.02319 6.08595 6.18209 6.34597 7.01536 7.20144 7.41958 7.50104 7.54728 7.97925 8.00206 8.54736 9.12076 9.48076 9.98688 10.70666 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029494 B = 0.002237 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.111042 B =12513.923191 C =12954.607867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.512 3.488 4 O -0.548 6.548 5 N -0.611 5.611 6 C 0.109 3.891 7 C -0.154 4.154 8 C 0.140 3.860 9 O -0.560 6.560 10 C 0.031 3.969 11 N -0.665 5.665 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.585 6.585 15 N -0.562 5.562 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.269 1.269 24 C -0.119 4.119 25 C 0.117 3.883 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.380 0.620 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.345 0.655 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 3.739 -8.315 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.301 3.699 4 O -0.426 6.426 5 N -0.344 5.344 6 C -0.013 4.013 7 C -0.193 4.193 8 C 0.099 3.901 9 O -0.367 6.367 10 C -0.099 4.099 11 N -0.299 5.299 12 C -0.081 4.081 13 C 0.225 3.775 14 O -0.469 6.469 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.158 4.158 25 C -0.005 4.005 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.229 0.771 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.164 0.836 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.699 3.712 -8.515 21.779 hybrid contribution 1.893 0.083 0.473 1.953 sum -17.806 3.795 -8.042 19.903 Atomic orbital electron populations 1.21532 0.93087 1.01540 1.03253 1.21673 0.98515 0.94006 1.04296 1.20804 0.81656 0.91899 0.75534 1.90674 1.54882 1.46685 1.50375 1.48187 1.05550 1.07590 1.73093 1.21684 0.90766 0.89118 0.99764 1.22431 0.99645 0.98526 0.98673 1.21126 0.90953 0.94564 0.83451 1.86484 1.52756 1.60310 1.37122 1.22659 0.94094 0.93684 0.99421 1.60116 1.14651 1.48487 1.06642 1.21666 0.93268 0.97370 0.95815 1.19766 0.84198 0.88096 0.85407 1.90512 1.77353 1.43636 1.35447 1.41870 1.22205 1.29677 1.26106 1.19700 1.02087 1.08860 1.12329 0.87881 1.25281 0.98852 0.98374 0.95457 1.69615 1.33469 1.36000 1.15112 0.85845 0.80287 0.80628 0.77462 1.20394 1.20900 1.19381 1.21879 0.95465 0.99017 0.99397 1.21465 0.97284 0.82954 0.98783 0.92087 0.92046 0.92079 0.88832 0.88941 0.89749 0.90659 0.88139 0.90819 0.77073 0.94487 0.90245 0.83573 0.93738 0.89535 0.77444 0.91817 0.90024 0.90255 0.90692 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.20 37.16 0.34 -0.70 16 2 C -0.15 -1.09 4.77 -27.88 -0.13 -1.22 16 3 C 0.51 5.59 7.70 -10.98 -0.08 5.51 16 4 O -0.55 -7.92 15.39 5.56 0.09 -7.84 16 5 N -0.61 -6.02 2.98 -173.05 -0.52 -6.54 16 6 C 0.11 0.90 6.08 -3.93 -0.02 0.88 16 7 C -0.15 -1.44 4.93 -26.83 -0.13 -1.57 16 8 C 0.14 1.37 0.78 -90.58 -0.07 1.30 16 9 O -0.56 -5.79 11.66 -35.23 -0.41 -6.20 16 10 C 0.03 0.35 4.86 -3.82 -0.02 0.33 16 11 N -0.67 -9.34 5.32 -115.05 -0.61 -9.95 16 12 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 13 C 0.44 9.89 7.82 -10.99 -0.09 9.81 16 14 O -0.58 -15.03 15.78 5.55 0.09 -14.95 16 15 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 16 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 17 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 20 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 C -0.12 -1.10 5.11 -26.63 -0.14 -1.24 16 25 C 0.12 1.19 6.19 -3.74 -0.02 1.16 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.09 0.58 7.68 -51.93 -0.40 0.18 16 30 H 0.09 0.55 7.95 -51.93 -0.41 0.13 16 31 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 32 H 0.08 0.63 7.81 -51.93 -0.41 0.23 16 33 H 0.10 1.07 7.56 -51.93 -0.39 0.68 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.38 3.49 7.46 45.56 0.34 3.83 16 36 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.34 4.90 6.84 -39.30 -0.27 4.63 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.78 7.81 -51.93 -0.41 0.38 16 46 H 0.09 0.98 7.01 -51.93 -0.36 0.62 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -32.33 369.88 -7.46 -39.79 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -6.67 Total: 14.52 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.64 Total: 7.23 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.46 Total: -53.76 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.24 Total: -28.98 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.33 -7.46 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484946349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.510 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds