Wall clock time and date at job start Tue Mar 31 2020 04:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21278 * 119.99985 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.62638 * 359.71455 * 5 3 2 7 7 C 1.52765 * 109.00862 * 233.58544 * 6 5 3 8 8 C 1.53035 * 109.38268 * 305.59133 * 7 6 5 9 9 O 1.42901 * 109.45146 * 301.22521 * 8 7 6 10 10 C 1.53002 * 109.45725 * 181.25838 * 8 7 6 11 11 N 1.46902 * 109.47104 * 59.93714 * 10 8 7 12 12 C 1.46901 * 111.00064 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47046 * 179.97438 * 12 11 10 14 14 O 1.21291 * 119.99898 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99764 * 179.97438 * 13 12 11 16 16 C 1.37100 * 119.99950 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99463 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00124 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47295 * 90.00029 * 20 18 16 22 22 H 1.48503 * 109.46942 * 209.99980 * 20 18 16 23 23 H 1.48497 * 109.47106 * 329.99541 * 20 18 16 24 24 C 1.53043 * 109.53810 * 61.23936 * 8 7 6 25 25 C 1.46920 * 120.63268 * 180.02562 * 5 3 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.09000 * 109.59185 * 353.42700 * 6 5 3 32 32 H 1.09004 * 109.58365 * 113.84987 * 6 5 3 33 33 H 1.09003 * 109.56176 * 185.55325 * 7 6 5 34 34 H 1.09000 * 109.36023 * 65.50261 * 7 6 5 35 35 H 0.96703 * 113.99704 * 300.06478 * 9 8 7 36 36 H 1.09006 * 109.46980 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47486 * 299.93143 * 10 8 7 38 38 H 1.00892 * 111.00383 * 56.04117 * 11 10 8 39 39 H 1.08996 * 109.47179 * 299.99656 * 12 11 10 40 40 H 1.09003 * 109.46748 * 59.99418 * 12 11 10 41 41 H 0.97001 * 120.00072 * 0.02562 * 15 13 12 42 42 H 0.97005 * 120.00046 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.49283 * 178.67961 * 24 8 7 44 44 H 1.09005 * 109.49595 * 58.58664 * 24 8 7 45 45 H 1.09006 * 109.58607 * 246.15487 * 25 5 3 46 46 H 1.09000 * 109.58547 * 6.57598 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3244 0.5610 0.0052 7 6 5.2968 0.7562 1.1671 8 6 5.9311 2.1456 1.0706 9 8 6.6121 2.2720 -0.1793 10 6 6.9287 2.3311 2.2157 11 7 7.9764 1.3054 2.1233 12 6 8.9549 1.4531 3.2090 13 6 10.0112 0.3858 3.0818 14 8 9.9547 -0.4183 2.1756 15 7 11.0192 0.3256 3.9745 16 6 11.9799 -0.6456 3.8591 17 1 11.9291 -1.3622 3.0527 18 6 13.0188 -0.7081 4.7797 19 7 13.0802 0.1636 5.7612 20 14 14.3281 -2.0309 4.6221 21 1 15.4398 -1.5288 3.7752 22 1 14.8489 -2.3750 5.9696 23 1 13.7366 -3.2408 3.9963 24 6 4.8398 3.2143 1.1670 25 6 3.8623 3.0469 0.0000 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.7968 -0.3850 0.1270 32 1 4.8779 0.5548 -0.9338 33 1 6.0768 -0.0038 1.1218 34 1 4.7562 0.6677 2.1095 35 1 7.3188 1.6249 -0.3094 36 1 7.3810 3.3205 2.1469 37 1 6.4094 2.2352 3.1692 38 1 8.4297 1.3317 1.2224 39 1 9.4216 2.4361 3.1463 40 1 8.4498 1.3514 4.1696 41 1 11.0645 0.9690 4.6990 42 1 13.8056 0.1203 6.4037 43 1 5.2947 4.2038 1.1217 44 1 4.3035 3.1026 2.1094 45 1 4.3773 3.2480 -0.9394 46 1 3.0298 3.7406 0.1185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484946349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:42 Heat of formation + Delta-G solvation = -153.769329 kcal Electronic energy + Delta-G solvation = -26411.542653 eV Core-core repulsion = 22527.561783 eV Total energy + Delta-G solvation = -3883.980870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45882 -40.24353 -39.64976 -36.92327 -36.07536 -35.45483 -34.02117 -33.26345 -32.70670 -31.96643 -29.44822 -27.41601 -26.04080 -24.94009 -24.29759 -23.01266 -21.42816 -21.09078 -19.92933 -19.89587 -18.34955 -18.12476 -17.36680 -17.02185 -16.84540 -16.61377 -16.42931 -15.97113 -15.69247 -15.58648 -15.13084 -14.93732 -14.86775 -14.48446 -14.32821 -14.04556 -13.78002 -13.52291 -13.42688 -13.15776 -13.03173 -12.89575 -12.87746 -12.69219 -12.51981 -12.40986 -12.22073 -12.13001 -12.11679 -12.02966 -11.49587 -11.40050 -10.98702 -10.71833 -10.32062 -10.00882 -9.63461 -9.37610 -8.46207 -5.94794 1.38741 1.42959 1.55375 1.62388 2.03762 2.06034 2.29177 2.84024 3.21397 3.24816 3.49127 3.55583 3.76579 3.81080 3.96284 4.11018 4.17243 4.24892 4.29604 4.36433 4.40843 4.46234 4.51452 4.55919 4.66344 4.73039 4.73652 4.78605 4.84954 4.93162 4.99068 5.01564 5.05848 5.24997 5.30460 5.33753 5.41700 5.57906 5.81218 6.05675 6.32624 6.42813 6.60001 6.75702 7.13072 7.17008 7.57099 8.11425 8.71077 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029494 B = 0.002237 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.111042 B =12513.923191 C =12954.607867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.504 3.496 4 O -0.592 6.592 5 N -0.609 5.609 6 C 0.111 3.889 7 C -0.149 4.149 8 C 0.144 3.856 9 O -0.566 6.566 10 C 0.036 3.964 11 N -0.670 5.670 12 C 0.065 3.935 13 C 0.439 3.561 14 O -0.619 6.619 15 N -0.575 5.575 16 C -0.331 4.331 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.113 4.113 25 C 0.118 3.882 26 H 0.084 0.916 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.385 0.615 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.343 0.657 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.746 3.146 -8.146 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.180 4.180 3 C 0.295 3.705 4 O -0.473 6.473 5 N -0.341 5.341 6 C -0.011 4.011 7 C -0.187 4.187 8 C 0.103 3.897 9 O -0.374 6.374 10 C -0.093 4.093 11 N -0.303 5.303 12 C -0.067 4.067 13 C 0.227 3.773 14 O -0.506 6.506 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.099 0.901 18 C -0.215 4.215 19 N -0.562 5.562 20 Si 0.816 3.184 21 H -0.197 1.197 22 H -0.198 1.198 23 H -0.196 1.196 24 C -0.152 4.152 25 C -0.005 4.005 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.234 0.766 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.162 0.838 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.836 3.126 -8.340 21.744 hybrid contribution 1.892 0.301 0.372 1.951 sum -17.944 3.428 -7.968 19.930 Atomic orbital electron populations 1.21530 0.93390 1.02584 1.01832 1.21745 0.98228 0.91852 1.06193 1.21480 0.81526 0.92955 0.74577 1.90653 1.55925 1.48256 1.52457 1.48281 1.05689 1.07831 1.72331 1.21785 0.90475 0.89519 0.99350 1.22354 0.99463 0.97750 0.99165 1.21105 0.90672 0.95073 0.82846 1.86481 1.53011 1.60630 1.37300 1.22694 0.93359 0.92898 1.00358 1.60095 1.14396 1.49994 1.05861 1.21519 0.92113 0.95614 0.97480 1.20822 0.84267 0.88428 0.83804 1.90485 1.78168 1.45331 1.36589 1.41953 1.22675 1.29624 1.26942 1.19665 1.03899 1.09898 1.12648 0.90122 1.26048 1.00309 1.00249 0.94853 1.69675 1.34150 1.36965 1.15432 0.84927 0.77696 0.77899 0.77831 1.19702 1.19752 1.19636 1.21836 0.95033 0.99169 0.99144 1.21398 0.96920 0.83219 0.98952 0.89717 0.93552 0.93486 0.86862 0.86770 0.87396 0.90548 0.89199 0.90723 0.76562 0.94114 0.89456 0.83763 0.91865 0.87804 0.77053 0.91364 0.89473 0.89815 0.91154 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.20 71.98 0.66 -1.24 16 2 C -0.14 -1.80 4.77 29.85 0.14 -1.66 16 3 C 0.50 10.53 7.70 87.66 0.67 11.21 16 4 O -0.59 -17.28 15.39 -3.02 -0.05 -17.32 16 5 N -0.61 -11.23 2.98 -819.81 -2.44 -13.67 16 6 C 0.11 1.60 6.08 86.22 0.52 2.12 16 7 C -0.15 -2.50 4.93 30.53 0.15 -2.35 16 8 C 0.14 2.57 0.78 -10.77 -0.01 2.56 16 9 O -0.57 -10.90 11.66 -148.98 -1.74 -12.64 16 10 C 0.04 0.72 4.86 86.30 0.42 1.14 16 11 N -0.67 -17.67 5.32 -517.92 -2.75 -20.42 16 12 C 0.07 2.03 6.17 85.56 0.53 2.55 16 13 C 0.44 19.64 7.82 87.66 0.69 20.32 16 14 O -0.62 -32.03 15.78 -3.07 -0.05 -32.08 16 15 N -0.57 -28.42 5.29 -306.98 -1.62 -30.04 16 16 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 17 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 18 C -0.01 -0.78 5.50 84.92 0.47 -0.32 16 19 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 20 Si 0.99 42.00 29.55 68.60 2.03 44.03 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 C -0.11 -1.93 5.11 30.66 0.16 -1.78 16 25 C 0.12 2.30 6.19 86.35 0.53 2.84 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 28 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.11 1.04 7.68 -2.39 -0.02 1.02 16 30 H 0.11 1.00 7.95 -2.39 -0.02 0.98 16 31 H 0.11 1.06 5.93 -2.39 -0.01 1.05 16 32 H 0.08 1.13 7.81 -2.38 -0.02 1.11 16 33 H 0.09 1.76 7.56 -2.39 -0.02 1.74 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.38 6.62 7.46 -74.06 -0.55 6.06 16 36 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.34 9.32 6.84 -89.70 -0.61 8.71 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.40 18.67 7.90 -92.71 -0.73 17.94 16 42 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.07 1.43 7.81 -2.38 -0.02 1.41 16 46 H 0.08 1.70 7.01 -2.39 -0.02 1.69 16 Total: -1.00 -70.13 369.88 -1.48 -71.61 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -0.89 Total: 41.22 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 5.75 Total: 17.91 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -6.54 Total: -112.73 kcal Atomic # 8 Polarization: -60.21 SS G_CDS: -1.83 Total: -62.04 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -70.13 -1.48 -71.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484946349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.163 kcal (2) G-P(sol) polarization free energy of solvation -70.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds