Wall clock time and date at job start Tue Mar 31 2020 04:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47380 * 2 1 4 4 C 1.53000 * 109.47280 * 239.99367 * 2 1 3 5 5 N 1.46504 * 109.47137 * 184.99956 * 4 2 1 6 6 C 1.46498 * 119.99564 * 90.00575 * 5 4 2 7 7 C 1.34773 * 120.00154 * 270.00090 * 5 4 2 8 8 O 1.21288 * 120.00029 * 0.02562 * 7 5 4 9 9 C 1.50692 * 120.00135 * 180.02562 * 7 5 4 10 10 H 1.09000 * 109.87268 * 304.29691 * 9 7 5 11 11 C 1.54099 * 109.87834 * 65.30705 * 9 7 5 12 12 C 1.54806 * 104.18584 * 121.45752 * 11 9 7 13 13 C 1.54991 * 102.09821 * 20.88058 * 12 11 9 14 14 O 1.43750 * 109.88253 * 183.29404 * 9 7 5 15 15 N 1.46901 * 109.47135 * 119.99687 * 2 1 3 16 16 C 1.46902 * 110.99844 * 274.99848 * 15 2 1 17 17 C 1.50702 * 109.47027 * 179.97438 * 16 15 2 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31414 * 120.00152 * 0.27554 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.27723 * 22 20 19 25 25 H 1.48496 * 109.47187 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99961 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00007 * 24 22 20 28 28 H 1.08998 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47292 * 300.00576 * 1 2 3 30 30 H 1.09001 * 109.46914 * 60.00062 * 1 2 3 31 31 H 1.08992 * 109.47023 * 305.00137 * 4 2 1 32 32 H 1.09002 * 109.46612 * 65.00112 * 4 2 1 33 33 H 1.08995 * 109.47521 * 89.99873 * 6 5 4 34 34 H 1.09007 * 109.46530 * 209.99462 * 6 5 4 35 35 H 1.08995 * 109.47287 * 329.99124 * 6 5 4 36 36 H 1.09005 * 110.48522 * 240.12615 * 11 9 7 37 37 H 1.08994 * 110.48942 * 2.77457 * 11 9 7 38 38 H 1.09005 * 110.90833 * 139.08347 * 12 11 9 39 39 H 1.09000 * 110.90915 * 262.67875 * 12 11 9 40 40 H 1.08999 * 110.62160 * 81.47689 * 13 12 11 41 41 H 1.09001 * 110.62011 * 204.47724 * 13 12 11 42 42 H 1.00895 * 111.00207 * 38.95191 * 15 2 1 43 43 H 1.09004 * 109.47131 * 60.00016 * 16 15 2 44 44 H 1.08994 * 109.47471 * 299.99766 * 16 15 2 45 45 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 46 46 H 0.96991 * 119.99827 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1258 -1.9920 -0.5610 7 6 4.2676 0.1490 -1.7155 8 8 3.7495 1.1142 -2.2363 9 6 5.7694 0.0406 -1.6556 10 1 6.0905 -0.0909 -0.6223 11 6 6.2430 -1.1529 -2.5076 12 6 7.1987 -0.5206 -3.5484 13 6 7.5872 0.8145 -2.8637 14 8 6.3675 1.2263 -2.2059 15 7 2.0196 -0.6924 1.1995 16 6 2.0824 0.2228 2.3469 17 6 2.5873 -0.5216 3.5561 18 8 2.8677 -1.6985 3.4704 19 7 2.7273 0.1206 4.7328 20 6 3.1871 -0.5565 5.8327 21 1 3.4375 -1.6042 5.7562 22 6 3.3368 0.1070 7.0444 23 7 3.0326 1.3821 7.1374 24 14 3.9707 -0.8136 8.5411 25 1 4.2381 -2.2279 8.1759 26 1 5.2259 -0.1791 9.0176 27 1 2.9514 -0.7657 9.6200 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 1.7516 -0.1585 -2.1369 33 1 4.2822 -2.7689 -1.3094 34 1 5.0851 -1.7021 -0.1323 35 1 3.4757 -2.3722 0.2270 36 1 6.7763 -1.8751 -1.8893 37 1 5.3966 -1.6264 -3.0048 38 1 8.0762 -1.1485 -3.7027 39 1 6.6820 -0.3385 -4.4908 40 1 8.3799 0.6546 -2.1329 41 1 7.8914 1.5523 -3.6062 42 1 1.4496 -1.4978 1.4102 43 1 1.0870 0.6165 2.5525 44 1 2.7588 1.0463 2.1182 45 1 2.5034 1.0619 4.8012 46 1 3.1369 1.8450 7.9833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485843703.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:01 Heat of formation + Delta-G solvation = -134.888029 kcal Electronic energy + Delta-G solvation = -26986.641974 eV Core-core repulsion = 23103.479858 eV Total energy + Delta-G solvation = -3883.162115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50322 -40.22633 -39.50874 -37.95172 -36.15263 -35.77935 -33.31683 -33.12907 -32.23760 -30.66507 -28.18105 -27.92572 -26.88877 -25.69574 -24.13681 -22.58128 -22.05124 -21.12732 -20.35211 -19.90336 -18.35518 -17.83378 -17.49469 -17.34114 -16.89855 -16.49104 -16.37100 -16.08555 -15.80499 -15.62865 -15.39011 -14.95498 -14.60042 -14.52940 -14.33334 -13.92028 -13.68525 -13.56278 -13.39641 -13.32546 -13.07752 -12.83037 -12.81224 -12.67335 -12.62952 -12.46630 -12.37650 -12.14588 -12.09946 -11.93472 -11.84622 -11.50191 -11.12379 -10.45335 -10.35797 -10.01182 -9.72430 -9.15486 -8.46218 -5.95103 1.37084 1.42286 1.54659 1.56634 1.94221 2.05153 2.28979 2.89752 2.99592 3.21143 3.41725 3.54793 3.62495 3.84022 3.91410 4.02425 4.12938 4.25414 4.29158 4.32346 4.39856 4.42290 4.49448 4.54590 4.58627 4.70012 4.71363 4.77341 4.84933 4.87884 4.91319 4.97608 4.98463 5.13245 5.21107 5.22561 5.41509 5.57518 5.80884 5.87477 6.07372 6.42744 6.47635 6.59340 7.12520 7.17802 7.56320 8.10088 8.71627 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.003182 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.111460 B = 8796.192193 C = 9893.888610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 H 0.056 0.944 4 C 0.130 3.870 5 N -0.587 5.587 6 C 0.082 3.918 7 C 0.505 3.495 8 O -0.580 6.580 9 C 0.056 3.944 10 H 0.095 0.905 11 C -0.137 4.137 12 C -0.147 4.147 13 C 0.033 3.967 14 O -0.390 6.390 15 N -0.659 5.659 16 C 0.067 3.933 17 C 0.444 3.556 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.083 0.917 22 C -0.016 4.016 23 N -0.924 5.924 24 Si 0.994 3.006 25 H -0.269 1.269 26 H -0.273 1.273 27 H -0.272 1.272 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.348 0.652 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.393 0.607 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -5.739 -20.081 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.042 4.042 3 H 0.075 0.925 4 C 0.007 3.993 5 N -0.319 5.319 6 C -0.060 4.060 7 C 0.293 3.707 8 O -0.460 6.460 9 C -0.005 4.005 10 H 0.113 0.887 11 C -0.175 4.175 12 C -0.184 4.184 13 C -0.043 4.043 14 O -0.309 6.309 15 N -0.291 5.291 16 C -0.065 4.065 17 C 0.231 3.769 18 O -0.499 6.499 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.101 0.899 22 C -0.215 4.215 23 N -0.565 5.565 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.198 1.198 27 H -0.198 1.198 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.168 0.832 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.227 0.773 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.004 -5.621 -20.393 21.529 hybrid contribution -0.808 0.599 1.399 1.723 sum 3.196 -5.021 -18.995 19.906 Atomic orbital electron populations 1.22365 0.94775 1.03331 1.02764 1.21999 0.94169 0.97467 0.90569 0.92548 1.21561 0.79066 1.02198 0.96464 1.47583 1.06559 1.21470 1.56248 1.22008 0.99038 0.86727 0.98231 1.20920 0.89940 0.82109 0.77707 1.90647 1.75658 1.32814 1.46889 1.22752 0.89978 0.87707 1.00015 0.88701 1.22990 1.00676 0.96169 0.97652 1.23145 1.00519 0.96375 0.98380 1.23945 0.86577 0.97329 0.96420 1.89016 1.38574 1.29245 1.74084 1.60172 1.58044 1.08796 1.02100 1.21466 1.00409 0.95300 0.89343 1.20678 0.83383 0.88010 0.84791 1.90469 1.56359 1.17727 1.85346 1.41974 1.58460 1.12542 1.08367 1.19728 1.41825 0.95978 0.88402 0.89896 1.26083 0.97331 0.96566 1.01558 1.69694 1.48859 1.09850 1.28098 0.84849 0.78040 0.78170 0.77159 1.19380 1.19820 1.19763 0.90704 0.92967 0.90734 0.87850 0.90195 0.90313 0.91637 0.90050 0.86953 0.89848 0.86857 0.90857 0.90415 0.87872 0.83180 0.92134 0.89850 0.77324 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 9.16 71.98 0.66 -2.75 16 2 C 0.07 1.71 2.89 44.91 0.13 1.84 16 3 H 0.06 1.70 7.80 -2.39 -0.02 1.69 16 4 C 0.13 2.89 5.15 86.38 0.44 3.33 16 5 N -0.59 -14.23 2.73 -846.77 -2.31 -16.54 16 6 C 0.08 1.65 8.83 127.77 1.13 2.78 16 7 C 0.51 14.95 6.87 87.66 0.60 15.56 16 8 O -0.58 -22.07 16.11 15.66 0.25 -21.82 16 9 C 0.06 1.38 2.97 30.22 0.09 1.47 16 10 H 0.10 2.28 7.18 -2.39 -0.02 2.26 16 11 C -0.14 -2.08 5.24 31.58 0.17 -1.92 16 12 C -0.15 -1.93 7.16 31.89 0.23 -1.70 16 13 C 0.03 0.58 7.72 72.66 0.56 1.14 16 14 O -0.39 -11.21 10.75 -130.27 -1.40 -12.61 16 15 N -0.66 -19.45 4.13 -495.58 -2.05 -21.50 16 16 C 0.07 2.37 5.97 85.56 0.51 2.88 16 17 C 0.44 20.69 7.82 87.66 0.69 21.37 16 18 O -0.61 -32.03 15.78 -3.07 -0.05 -32.08 16 19 N -0.58 -29.60 5.29 -306.97 -1.62 -31.23 16 20 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 21 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.92 -50.42 13.05 21.67 0.28 -50.14 16 24 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.05 1.11 7.45 -2.39 -0.02 1.09 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.74 8.07 -2.39 -0.02 1.72 16 32 H 0.08 1.88 7.42 -2.39 -0.02 1.86 16 33 H 0.08 1.09 7.86 -2.39 -0.02 1.07 16 34 H 0.06 1.33 6.19 -2.38 -0.01 1.32 16 35 H 0.08 1.94 6.92 -2.39 -0.02 1.92 16 36 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.08 1.25 7.34 -2.39 -0.02 1.23 16 38 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.35 10.25 8.17 -89.70 -0.73 9.51 16 43 H 0.06 1.93 7.44 -2.38 -0.02 1.91 16 44 H 0.08 2.95 8.05 -2.39 -0.02 2.93 16 45 H 0.39 19.65 7.90 -92.71 -0.73 18.91 16 46 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -74.60 373.91 1.15 -73.45 By element: Atomic # 1 Polarization: 42.36 SS G_CDS: -0.47 Total: 41.89 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 6.49 Total: 25.86 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -5.70 Total: -119.41 kcal Atomic # 8 Polarization: -65.31 SS G_CDS: -1.20 Total: -66.51 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -74.60 1.15 -73.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485843703.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.441 kcal (2) G-P(sol) polarization free energy of solvation -74.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds