Wall clock time and date at job start Tue Mar 31 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47344 * 2 1 4 4 C 1.52999 * 109.47250 * 240.00059 * 2 1 3 5 5 N 1.46497 * 109.47643 * 182.24502 * 4 2 1 6 6 C 1.46503 * 119.99574 * 95.59874 * 5 4 2 7 7 C 1.34767 * 120.00435 * 275.60835 * 5 4 2 8 8 O 1.21289 * 119.99954 * 4.70334 * 7 5 4 9 9 C 1.50697 * 120.00278 * 184.70810 * 7 5 4 10 10 H 1.08993 * 110.33218 * 52.28711 * 9 7 5 11 11 C 1.54473 * 110.37279 * 290.03021 * 9 7 5 12 12 C 1.54509 * 104.06734 * 217.19012 * 11 9 7 13 13 C 1.54476 * 104.05900 * 0.02562 * 12 11 9 14 14 O 1.44425 * 110.37195 * 174.53475 * 9 7 5 15 15 N 1.46907 * 109.47306 * 120.00037 * 2 1 3 16 16 C 1.46898 * 110.99861 * 272.79694 * 15 2 1 17 17 C 1.50705 * 109.46931 * 180.02562 * 16 15 2 18 18 O 1.21295 * 119.99883 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99737 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99513 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00313 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99475 * 179.72442 * 20 19 17 23 23 N 1.31404 * 120.00399 * 0.27277 * 22 20 19 24 24 Si 1.86804 * 119.99715 * 180.27371 * 22 20 19 25 25 H 1.48492 * 109.47284 * 59.99583 * 24 22 20 26 26 H 1.48498 * 109.47068 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46955 * 299.99728 * 24 22 20 28 28 H 1.08997 * 109.47299 * 60.00069 * 1 2 3 29 29 H 1.09001 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47039 * 299.99781 * 1 2 3 31 31 H 1.09004 * 109.47032 * 302.24760 * 4 2 1 32 32 H 1.08998 * 109.47137 * 62.24622 * 4 2 1 33 33 H 1.08993 * 109.47712 * 358.70786 * 6 5 4 34 34 H 1.09009 * 109.46673 * 118.70923 * 6 5 4 35 35 H 1.08998 * 109.47342 * 238.70406 * 6 5 4 36 36 H 1.08999 * 110.51659 * 335.84219 * 11 9 7 37 37 H 1.09008 * 110.50795 * 98.54850 * 11 9 7 38 38 H 1.08997 * 110.50921 * 118.64913 * 12 11 9 39 39 H 1.08999 * 110.51116 * 241.21818 * 12 11 9 40 40 H 1.09004 * 110.37172 * 142.81026 * 13 12 11 41 41 H 1.09001 * 110.37422 * 265.03213 * 13 12 11 42 42 H 1.00903 * 110.99715 * 148.83716 * 15 2 1 43 43 H 1.08995 * 109.47294 * 59.99809 * 16 15 2 44 44 H 1.09006 * 109.47083 * 299.99722 * 16 15 2 45 45 H 0.96999 * 119.99991 * 359.97438 * 19 17 16 46 46 H 0.96996 * 120.00606 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5039 -0.7683 -1.2226 6 6 4.1892 -1.9533 -0.7006 7 6 4.2203 0.2785 -1.6779 8 8 3.6556 1.2924 -2.0302 9 6 5.7229 0.1892 -1.7496 10 1 6.0236 -0.7064 -2.2933 11 6 6.3297 0.1851 -0.3290 12 6 7.6258 1.0140 -0.4719 13 6 7.6484 1.4214 -1.9618 14 8 6.2670 1.3679 -2.3824 15 7 2.0197 -0.6925 1.1995 16 6 2.1321 0.2344 2.3335 17 6 2.6367 -0.5101 3.5427 18 8 2.8785 -1.6963 3.4673 19 7 2.8184 0.1420 4.7082 20 6 3.2780 -0.5352 5.8081 21 1 3.4941 -1.5912 5.7407 22 6 3.4708 0.1383 7.0081 23 7 3.2075 1.4231 7.0902 24 14 4.1043 -0.7828 8.5047 25 1 5.4368 -1.3636 8.2011 26 1 4.2229 0.1554 9.6497 27 1 3.1572 -1.8723 8.8529 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6441 -1.7366 -1.2696 32 1 1.7099 -0.1847 -2.1387 33 1 3.4512 -2.6795 -0.3603 34 1 4.7989 -2.3967 -1.4881 35 1 4.8277 -1.6655 0.1346 36 1 5.6492 0.6590 0.3784 37 1 6.5602 -0.8331 -0.0151 38 1 7.5860 1.8977 0.1648 39 1 8.4967 0.4064 -0.2263 40 1 8.0409 2.4322 -2.0729 41 1 8.2475 0.7169 -2.5388 42 1 2.9002 -1.1508 1.0182 43 1 1.1535 0.6619 2.5518 44 1 2.8296 1.0334 2.0819 45 1 2.6247 1.0905 4.7685 46 1 3.3424 1.8933 7.9277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485843704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:03 Heat of formation + Delta-G solvation = -134.913075 kcal Electronic energy + Delta-G solvation = -27316.999379 eV Core-core repulsion = 23433.836178 eV Total energy + Delta-G solvation = -3883.163202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.65807 -40.27214 -39.66299 -38.02746 -36.17281 -35.78495 -33.35886 -33.18972 -32.38942 -30.73842 -28.32673 -28.13785 -27.08137 -25.75387 -24.26698 -22.48999 -21.90031 -21.16284 -20.43155 -19.92402 -18.52322 -17.98083 -17.76999 -17.17670 -17.11069 -16.65258 -16.32013 -16.21990 -15.89616 -15.82522 -15.49432 -15.16038 -14.75077 -14.44757 -14.26417 -14.05176 -13.82770 -13.62798 -13.48082 -13.37734 -12.94085 -12.87928 -12.84307 -12.81522 -12.60625 -12.57224 -12.42927 -12.28564 -12.12299 -11.97232 -11.76635 -11.50224 -11.10870 -10.69190 -10.36718 -10.03581 -9.80872 -9.43587 -8.46885 -5.96440 1.38479 1.39930 1.42211 1.53443 1.69371 2.01206 2.28284 2.85251 2.93809 3.19761 3.28141 3.47107 3.57058 3.80626 3.86193 3.96726 4.10929 4.13756 4.18720 4.23965 4.26588 4.35414 4.40569 4.48028 4.52991 4.55909 4.63708 4.74437 4.76303 4.81862 4.90665 4.92459 4.95655 5.01422 5.05793 5.28039 5.40031 5.45784 5.67540 5.83772 6.03883 6.20508 6.39375 6.57211 6.99219 7.10269 7.52949 8.06614 8.70394 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.003687 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.597100 B = 7592.021194 C = 8999.096037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.066 3.934 3 H 0.026 0.974 4 C 0.118 3.882 5 N -0.611 5.611 6 C 0.058 3.942 7 C 0.511 3.489 8 O -0.568 6.568 9 C 0.062 3.938 10 H 0.127 0.873 11 C -0.145 4.145 12 C -0.151 4.151 13 C 0.039 3.961 14 O -0.385 6.385 15 N -0.665 5.665 16 C 0.064 3.936 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.084 0.916 22 C -0.013 4.013 23 N -0.923 5.923 24 Si 0.995 3.005 25 H -0.269 1.269 26 H -0.273 1.273 27 H -0.271 1.271 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.346 0.654 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.394 0.606 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -3.854 -18.077 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.045 4.045 3 H 0.044 0.956 4 C -0.005 4.005 5 N -0.345 5.345 6 C -0.084 4.084 7 C 0.299 3.701 8 O -0.446 6.446 9 C 0.001 3.999 10 H 0.145 0.855 11 C -0.183 4.183 12 C -0.189 4.189 13 C -0.037 4.037 14 O -0.304 6.304 15 N -0.300 5.300 16 C -0.069 4.069 17 C 0.229 3.771 18 O -0.500 6.500 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.102 0.898 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.196 1.196 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.167 0.833 43 H 0.116 0.884 44 H 0.063 0.937 45 H 0.227 0.773 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.188 -4.056 -18.119 19.278 hybrid contribution 0.838 0.973 0.980 1.615 sum 6.026 -3.083 -17.138 18.426 Atomic orbital electron populations 1.21695 0.92436 1.03027 1.01866 1.22008 0.97432 0.95593 0.89457 0.95563 1.21843 0.78332 1.03227 0.97107 1.47918 1.07011 1.17457 1.62072 1.22332 0.99305 0.86610 1.00111 1.20828 0.90068 0.82673 0.76547 1.90688 1.73086 1.31142 1.49727 1.22997 0.89794 0.91542 0.95553 0.85537 1.22982 0.97414 1.03498 0.94452 1.22968 0.98068 1.00717 0.97149 1.23733 0.82148 1.03856 0.93997 1.89239 1.25845 1.44772 1.70506 1.60334 1.36027 1.29852 1.03757 1.21548 1.01466 0.93674 0.90207 1.20596 0.83346 0.88037 0.85123 1.90464 1.57346 1.16938 1.85279 1.41945 1.58359 1.11688 1.08926 1.19673 1.42314 0.95247 0.89049 0.89819 1.26089 0.97180 0.96517 1.01515 1.69678 1.48736 1.09107 1.28814 0.84960 0.78835 0.77758 0.76628 1.19366 1.19743 1.19586 0.90817 0.91077 0.93300 0.86750 0.89601 0.88681 0.88411 0.91813 0.93298 0.86714 0.91413 0.87275 0.88078 0.89306 0.83308 0.88369 0.93735 0.77284 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.44 71.98 0.68 -2.37 16 2 C 0.07 1.78 2.89 44.91 0.13 1.91 16 3 H 0.03 0.85 7.69 -2.38 -0.02 0.83 16 4 C 0.12 2.59 4.96 86.38 0.43 3.02 16 5 N -0.61 -13.52 2.54 -846.76 -2.15 -15.67 16 6 C 0.06 0.94 7.76 127.77 0.99 1.93 16 7 C 0.51 14.04 6.92 87.66 0.61 14.64 16 8 O -0.57 -20.87 16.21 15.26 0.25 -20.62 16 9 C 0.06 1.33 2.93 30.35 0.09 1.41 16 10 H 0.13 1.81 7.64 -2.39 -0.02 1.79 16 11 C -0.15 -2.85 5.27 31.61 0.17 -2.68 16 12 C -0.15 -2.47 7.09 31.61 0.22 -2.25 16 13 C 0.04 0.64 7.63 72.48 0.55 1.19 16 14 O -0.38 -10.04 10.92 -130.67 -1.43 -11.47 16 15 N -0.66 -21.56 5.94 -495.56 -2.94 -24.50 16 16 C 0.06 2.38 5.96 85.56 0.51 2.89 16 17 C 0.44 21.17 7.82 87.66 0.69 21.85 16 18 O -0.61 -32.90 15.78 -3.08 -0.05 -32.95 16 19 N -0.57 -29.69 5.29 -306.98 -1.62 -31.31 16 20 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 21 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 24 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.22 7.60 -2.39 -0.02 1.20 16 31 H 0.11 1.98 7.82 -2.38 -0.02 1.97 16 32 H 0.09 1.94 7.67 -2.39 -0.02 1.92 16 33 H 0.09 1.51 7.49 -2.39 -0.02 1.50 16 34 H 0.10 0.93 7.67 -2.38 -0.02 0.91 16 35 H 0.06 1.14 5.76 -2.39 -0.01 1.13 16 36 H 0.05 1.27 7.86 -2.39 -0.02 1.25 16 37 H 0.11 1.65 6.99 -2.38 -0.02 1.63 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.35 11.10 5.19 -89.69 -0.47 10.64 16 43 H 0.10 3.43 7.59 -2.39 -0.02 3.42 16 44 H 0.04 1.63 8.05 -2.38 -0.02 1.61 16 45 H 0.39 19.83 7.90 -92.71 -0.73 19.09 16 46 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -75.57 371.71 0.51 -75.06 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: -0.20 Total: 43.59 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 6.35 Total: 23.35 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -6.44 Total: -121.35 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -1.23 Total: -65.04 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -75.57 0.51 -75.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485843704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.851 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds