Wall clock time and date at job start Tue Mar 31 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99514 * 2 1 4 4 H 1.08999 * 109.47672 * 30.00381 * 3 2 1 5 5 C 1.52998 * 109.46966 * 269.99739 * 3 2 1 6 6 C 1.50703 * 109.46466 * 150.00172 * 3 2 1 7 7 O 1.21280 * 120.00442 * 4.99625 * 6 3 2 8 8 N 1.34781 * 119.99674 * 185.00059 * 6 3 2 9 9 C 1.46498 * 119.99729 * 180.02562 * 8 6 3 10 10 C 1.53008 * 109.46843 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.46827 * 64.99912 * 10 9 8 12 12 N 1.46901 * 109.47243 * 304.99908 * 10 9 8 13 13 C 1.46905 * 111.00011 * 301.49870 * 12 10 9 14 14 C 1.50694 * 109.47216 * 185.06056 * 13 12 10 15 15 O 1.21288 * 119.99998 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99907 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99842 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99508 * 0.02562 * 17 16 14 19 19 C 1.38945 * 119.99689 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00168 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47399 * 89.99837 * 21 19 17 23 23 H 1.48497 * 109.47381 * 210.00332 * 21 19 17 24 24 H 1.48507 * 109.47200 * 329.99980 * 21 19 17 25 25 C 1.52999 * 109.46730 * 184.99893 * 10 9 8 26 26 C 1.53008 * 117.49749 * 253.76418 * 25 10 9 27 27 C 1.53006 * 117.49481 * 185.10675 * 25 10 9 28 28 H 1.09005 * 109.47465 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47589 * 299.99874 * 1 2 3 30 30 H 1.09003 * 109.47481 * 60.00079 * 1 2 3 31 31 H 1.09007 * 109.46859 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47592 * 300.00009 * 5 3 2 33 33 H 1.08996 * 109.47328 * 60.00875 * 5 3 2 34 34 H 0.96997 * 120.00160 * 359.97438 * 8 6 3 35 35 H 1.08999 * 109.47282 * 299.99652 * 9 8 6 36 36 H 1.08999 * 109.47414 * 60.00338 * 9 8 6 37 37 H 1.00896 * 110.99695 * 65.44644 * 12 10 9 38 38 H 1.09003 * 109.46984 * 305.06497 * 13 12 10 39 39 H 1.09003 * 109.46915 * 65.05727 * 13 12 10 40 40 H 0.96995 * 119.99762 * 0.02562 * 16 14 13 41 41 H 0.96999 * 119.99477 * 180.02562 * 20 19 17 42 42 H 1.08993 * 115.55597 * 39.44209 * 25 10 9 43 43 H 1.09000 * 117.49609 * 0.02562 * 26 25 10 44 44 H 1.08997 * 117.49344 * 145.02006 * 26 25 10 45 45 H 1.08996 * 117.50010 * 214.97614 * 27 25 10 46 46 H 1.09000 * 117.49920 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 3.3385 1.2639 0.7104 7 8 3.7896 0.2045 1.0914 8 7 4.0253 2.4040 0.9224 9 6 5.3169 2.3635 1.6125 10 6 5.8814 3.7815 1.7219 11 1 5.2327 4.3826 2.3591 12 7 5.9504 4.3856 0.3847 13 6 6.7896 3.5812 -0.5137 14 6 6.9381 4.2930 -1.8336 15 8 6.3985 5.3650 -2.0086 16 7 7.6715 3.7387 -2.8193 17 6 7.8062 4.3860 -4.0204 18 1 7.3250 5.3403 -4.1764 19 6 8.5618 3.8144 -5.0367 20 7 9.1468 2.6531 -4.8468 21 14 8.7459 4.6966 -6.6728 22 1 9.9357 5.5838 -6.6257 23 1 8.9164 3.6971 -7.7578 24 1 7.5318 5.5103 -6.9359 25 6 7.2844 3.7263 2.3298 26 6 7.4453 4.1906 3.7788 27 6 7.9754 5.0572 2.6337 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.6613 2.7671 -1.4425 32 1 2.8829 1.0775 -1.9563 33 1 1.2568 1.8015 -1.9563 34 1 3.6647 3.2513 0.6175 35 1 5.1825 1.9476 2.6110 36 1 6.0105 1.7393 1.0492 37 1 5.0274 4.5146 -0.0018 38 1 7.7725 3.4407 -0.0639 39 1 6.3218 2.6100 -0.6751 40 1 8.1033 2.8816 -2.6791 41 1 9.6745 2.2543 -5.5563 42 1 7.9102 2.8996 1.9938 43 1 6.5515 4.5349 4.2991 44 1 8.1771 3.6694 4.3959 45 1 9.0557 5.1059 2.4980 46 1 7.4306 5.9720 2.4002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490637743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:46 Heat of formation + Delta-G solvation = -88.255658 kcal Electronic energy + Delta-G solvation = -26764.470780 eV Core-core repulsion = 22883.330796 eV Total energy + Delta-G solvation = -3881.139984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26848 -38.95309 -37.85641 -37.53085 -35.46415 -34.04491 -33.45813 -31.78320 -31.20085 -29.00890 -27.05448 -26.52044 -24.71109 -24.08266 -22.76770 -22.24388 -20.66941 -19.99857 -18.97591 -17.87447 -17.76484 -17.18085 -16.67409 -15.95858 -15.53776 -15.41739 -15.26514 -15.03505 -14.89538 -14.43767 -14.04280 -13.90674 -13.74406 -13.46343 -13.33235 -12.90594 -12.84833 -12.60303 -12.24718 -12.09402 -11.93427 -11.58993 -11.50796 -11.42114 -11.38940 -11.05247 -10.93802 -10.39672 -10.31346 -10.25175 -10.21024 -10.16138 -9.63274 -9.50148 -9.23102 -8.52215 -8.09071 -7.95411 -6.40800 -3.81851 2.48822 2.67012 3.17973 3.26639 3.31896 3.66054 3.78302 3.91956 4.14200 4.38653 4.46700 4.48012 4.61867 4.75429 4.78501 4.99067 5.02857 5.06418 5.08928 5.19300 5.22718 5.28972 5.35339 5.37871 5.42938 5.48753 5.56364 5.64532 5.72643 5.88654 5.96841 5.98896 6.02280 6.12546 6.20852 6.27108 6.28937 6.75395 7.09828 7.29309 7.51450 7.55527 8.06670 8.08356 8.61910 9.18543 9.55368 10.06612 10.76872 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.008989 B = 0.004032 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.262961 B = 6942.961424 C = 9347.948736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.071 3.929 4 H 0.086 0.914 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.518 6.518 8 N -0.727 5.727 9 C 0.085 3.915 10 C 0.110 3.890 11 H 0.089 0.911 12 N -0.650 5.650 13 C 0.047 3.953 14 C 0.442 3.558 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.147 4.147 26 C -0.181 4.181 27 C -0.153 4.153 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.343 0.657 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 -1.505 14.263 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.009 3.991 4 H 0.103 0.897 5 C -0.231 4.231 6 C 0.301 3.699 7 O -0.392 6.392 8 N -0.382 5.382 9 C -0.041 4.041 10 C -0.001 4.001 11 H 0.107 0.893 12 N -0.282 5.282 13 C -0.085 4.085 14 C 0.228 3.772 15 O -0.468 6.468 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.166 4.166 26 C -0.219 4.219 27 C -0.190 4.190 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.448 -1.420 14.432 18.476 hybrid contribution -0.470 -0.376 -1.159 1.306 sum -11.919 -1.795 13.273 17.929 Atomic orbital electron populations 1.22881 0.80657 1.03231 1.00023 1.88059 1.19616 1.25155 1.94945 1.21939 0.93267 0.86812 0.97043 0.89674 1.22252 1.03666 1.02554 0.94585 1.20370 0.86254 0.83967 0.79350 1.90726 1.69209 1.29623 1.49676 1.45891 1.22111 1.09497 1.60746 1.22145 0.84295 0.99718 0.97897 1.21429 0.95116 0.91596 0.91992 0.89282 1.60205 1.17769 1.49126 1.01077 1.21727 0.98869 0.94619 0.93326 1.19792 0.84467 0.87642 0.85338 1.90512 1.51495 1.22799 1.82014 1.41868 1.44690 1.21278 1.12181 1.19684 1.29412 1.04865 0.88963 0.87962 1.25253 0.96590 0.96111 0.99940 1.69614 1.33250 1.16646 1.34686 0.85875 0.78869 0.78722 0.80913 1.20405 1.20951 1.19448 1.22057 0.96787 0.99872 0.97900 1.23011 1.03344 1.04679 0.90820 1.22807 1.00305 0.94917 1.00987 0.89159 0.93929 0.93708 0.90563 0.90729 0.91073 0.76662 0.90896 0.90757 0.83732 0.89306 0.93665 0.77524 0.91869 0.87743 0.88980 0.88962 0.88997 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.56 9.89 -55.09 -0.54 -5.11 16 3 C 0.07 0.77 3.13 -27.88 -0.09 0.68 16 4 H 0.09 0.66 7.79 -51.93 -0.40 0.26 16 5 C -0.17 -1.78 9.48 37.16 0.35 -1.43 16 6 C 0.52 6.96 7.18 -10.98 -0.08 6.88 16 7 O -0.52 -9.30 16.51 -14.30 -0.24 -9.53 16 8 N -0.73 -8.02 5.32 -60.29 -0.32 -8.34 16 9 C 0.08 0.98 4.60 -4.04 -0.02 0.96 16 10 C 0.11 1.20 2.88 -67.71 -0.19 1.01 16 11 H 0.09 0.86 7.94 -51.93 -0.41 0.45 16 12 N -0.65 -9.27 5.87 -107.98 -0.63 -9.90 16 13 C 0.05 0.80 5.39 -4.98 -0.03 0.77 16 14 C 0.44 10.16 7.83 -10.99 -0.09 10.08 16 15 O -0.58 -15.30 15.89 5.55 0.09 -15.21 16 16 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 21 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.15 -1.61 4.03 -90.61 -0.36 -1.98 16 26 C -0.18 -1.67 10.18 -26.69 -0.27 -1.94 16 27 C -0.15 -1.71 10.21 -26.69 -0.27 -1.98 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 31 H 0.08 0.73 7.92 -51.92 -0.41 0.32 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 34 H 0.40 3.56 6.95 -40.82 -0.28 3.27 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.00 6.78 -51.93 -0.35 0.65 16 37 H 0.34 4.76 7.21 -39.29 -0.28 4.48 16 38 H 0.09 1.44 6.68 -51.93 -0.35 1.10 16 39 H 0.05 0.74 6.68 -51.93 -0.35 0.39 16 40 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.10 1.18 7.68 -51.93 -0.40 0.78 16 43 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -34.32 383.34 -7.69 -42.02 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -7.27 Total: 16.01 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.20 Total: 6.43 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.29 Total: -56.38 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.69 Total: -29.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.32 -7.69 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490637743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.240 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds