Wall clock time and date at job start Tue Mar 31 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99514 * 2 1 4 4 H 1.08999 * 109.47672 * 30.00381 * 3 2 1 5 5 C 1.52998 * 109.46966 * 269.99739 * 3 2 1 6 6 C 1.50703 * 109.46466 * 150.00172 * 3 2 1 7 7 O 1.21280 * 120.00442 * 4.99625 * 6 3 2 8 8 N 1.34781 * 119.99674 * 185.00059 * 6 3 2 9 9 C 1.46498 * 119.99729 * 180.02562 * 8 6 3 10 10 C 1.53008 * 109.46843 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.46827 * 64.99912 * 10 9 8 12 12 N 1.46901 * 109.47243 * 304.99908 * 10 9 8 13 13 C 1.46905 * 111.00011 * 301.49870 * 12 10 9 14 14 C 1.50694 * 109.47216 * 185.06056 * 13 12 10 15 15 O 1.21288 * 119.99998 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99907 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99842 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99508 * 0.02562 * 17 16 14 19 19 C 1.38945 * 119.99689 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00168 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47399 * 89.99837 * 21 19 17 23 23 H 1.48497 * 109.47381 * 210.00332 * 21 19 17 24 24 H 1.48507 * 109.47200 * 329.99980 * 21 19 17 25 25 C 1.52999 * 109.46730 * 184.99893 * 10 9 8 26 26 C 1.53008 * 117.49749 * 253.76418 * 25 10 9 27 27 C 1.53006 * 117.49481 * 185.10675 * 25 10 9 28 28 H 1.09005 * 109.47465 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47589 * 299.99874 * 1 2 3 30 30 H 1.09003 * 109.47481 * 60.00079 * 1 2 3 31 31 H 1.09007 * 109.46859 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47592 * 300.00009 * 5 3 2 33 33 H 1.08996 * 109.47328 * 60.00875 * 5 3 2 34 34 H 0.96997 * 120.00160 * 359.97438 * 8 6 3 35 35 H 1.08999 * 109.47282 * 299.99652 * 9 8 6 36 36 H 1.08999 * 109.47414 * 60.00338 * 9 8 6 37 37 H 1.00896 * 110.99695 * 65.44644 * 12 10 9 38 38 H 1.09003 * 109.46984 * 305.06497 * 13 12 10 39 39 H 1.09003 * 109.46915 * 65.05727 * 13 12 10 40 40 H 0.96995 * 119.99762 * 0.02562 * 16 14 13 41 41 H 0.96999 * 119.99477 * 180.02562 * 20 19 17 42 42 H 1.08993 * 115.55597 * 39.44209 * 25 10 9 43 43 H 1.09000 * 117.49609 * 0.02562 * 26 25 10 44 44 H 1.08997 * 117.49344 * 145.02006 * 26 25 10 45 45 H 1.08996 * 117.50010 * 214.97614 * 27 25 10 46 46 H 1.09000 * 117.49920 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 3.3385 1.2639 0.7104 7 8 3.7896 0.2045 1.0914 8 7 4.0253 2.4040 0.9224 9 6 5.3169 2.3635 1.6125 10 6 5.8814 3.7815 1.7219 11 1 5.2327 4.3826 2.3591 12 7 5.9504 4.3856 0.3847 13 6 6.7896 3.5812 -0.5137 14 6 6.9381 4.2930 -1.8336 15 8 6.3985 5.3650 -2.0086 16 7 7.6715 3.7387 -2.8193 17 6 7.8062 4.3860 -4.0204 18 1 7.3250 5.3403 -4.1764 19 6 8.5618 3.8144 -5.0367 20 7 9.1468 2.6531 -4.8468 21 14 8.7459 4.6966 -6.6728 22 1 9.9357 5.5838 -6.6257 23 1 8.9164 3.6971 -7.7578 24 1 7.5318 5.5103 -6.9359 25 6 7.2844 3.7263 2.3298 26 6 7.4453 4.1906 3.7788 27 6 7.9754 5.0572 2.6337 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.6613 2.7671 -1.4425 32 1 2.8829 1.0775 -1.9563 33 1 1.2568 1.8015 -1.9563 34 1 3.6647 3.2513 0.6175 35 1 5.1825 1.9476 2.6110 36 1 6.0105 1.7393 1.0492 37 1 5.0274 4.5146 -0.0018 38 1 7.7725 3.4407 -0.0639 39 1 6.3218 2.6100 -0.6751 40 1 8.1033 2.8816 -2.6791 41 1 9.6745 2.2543 -5.5563 42 1 7.9102 2.8996 1.9938 43 1 6.5515 4.5349 4.2991 44 1 8.1771 3.6694 4.3959 45 1 9.0557 5.1059 2.4980 46 1 7.4306 5.9720 2.4002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490637743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:46 Heat of formation + Delta-G solvation = -114.845566 kcal Electronic energy + Delta-G solvation = -26765.623805 eV Core-core repulsion = 22883.330796 eV Total energy + Delta-G solvation = -3882.293009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29737 -40.29180 -39.27646 -38.48595 -36.50769 -35.92934 -34.70780 -33.24645 -32.65941 -30.16534 -28.01412 -27.71623 -26.15840 -25.34063 -23.65491 -23.05545 -21.82186 -21.26173 -20.40921 -19.79784 -18.69582 -18.18271 -18.03405 -17.01338 -16.85774 -16.55121 -16.30615 -16.27612 -15.97885 -15.92902 -15.59043 -15.33347 -14.78659 -14.59808 -14.39794 -14.10962 -13.94946 -13.66171 -13.49014 -13.39758 -13.08212 -12.97466 -12.81414 -12.70681 -12.40640 -12.26830 -12.16661 -12.12341 -11.91406 -11.48963 -11.19196 -11.08677 -11.00958 -10.58084 -10.34054 -10.23662 -10.00283 -9.37871 -8.45475 -5.94378 1.38403 1.41906 1.46137 1.54637 1.77955 2.06868 2.29118 2.73631 2.98058 3.14068 3.22058 3.56953 3.58085 3.60878 3.85959 3.92550 3.97431 4.14719 4.23374 4.26294 4.37805 4.41243 4.43493 4.49779 4.53114 4.55243 4.59114 4.68815 4.74764 4.84052 4.91469 4.92223 5.13478 5.15348 5.25133 5.34748 5.40603 5.41617 5.83375 6.01331 6.06686 6.36417 6.41908 6.60363 7.10004 7.13580 7.57526 8.12023 8.72028 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.008989 B = 0.004032 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.262961 B = 6942.961424 C = 9347.948736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.074 3.926 4 H 0.123 0.877 5 C -0.169 4.169 6 C 0.510 3.490 7 O -0.571 6.571 8 N -0.714 5.714 9 C 0.090 3.910 10 C 0.122 3.878 11 H 0.113 0.887 12 N -0.657 5.657 13 C 0.068 3.932 14 C 0.442 3.558 15 O -0.616 6.616 16 N -0.576 5.576 17 C -0.331 4.331 18 H 0.082 0.918 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.270 1.270 25 C -0.162 4.162 26 C -0.155 4.155 27 C -0.167 4.167 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.411 0.589 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.346 0.654 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.393 0.607 41 H 0.276 0.724 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.215 -0.785 15.083 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.316 6.316 3 C 0.013 3.987 4 H 0.141 0.859 5 C -0.227 4.227 6 C 0.296 3.704 7 O -0.449 6.449 8 N -0.369 5.369 9 C -0.036 4.036 10 C 0.012 3.988 11 H 0.131 0.869 12 N -0.289 5.289 13 C -0.065 4.065 14 C 0.230 3.770 15 O -0.502 6.502 16 N -0.213 5.213 17 C -0.461 4.461 18 H 0.100 0.900 19 C -0.214 4.214 20 N -0.564 5.564 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.195 1.195 25 C -0.182 4.182 26 C -0.192 4.192 27 C -0.204 4.204 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.248 0.752 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.166 0.834 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.226 0.774 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.106 0.894 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.532 -0.674 15.269 19.765 hybrid contribution -0.170 -0.577 -1.342 1.471 sum -12.701 -1.251 13.928 18.891 Atomic orbital electron populations 1.23109 0.78523 1.04236 1.01562 1.88017 1.22093 1.26318 1.95140 1.22028 0.92402 0.87190 0.97112 0.85934 1.22238 1.04173 1.01978 0.94299 1.20989 0.87127 0.83548 0.78693 1.90696 1.70625 1.31490 1.52071 1.45813 1.21648 1.09608 1.59846 1.22069 0.84044 0.99585 0.97875 1.21446 0.95768 0.91287 0.90258 0.86873 1.60183 1.17662 1.49151 1.01857 1.21461 1.00214 0.94236 0.90575 1.20787 0.82500 0.87173 0.86583 1.90482 1.52353 1.24387 1.82991 1.41964 1.45614 1.21427 1.12301 1.19678 1.30779 1.04878 0.90724 0.90026 1.26045 0.95730 0.96723 1.02876 1.69687 1.33412 1.17502 1.35809 0.84935 0.78781 0.77820 0.76867 1.19702 1.19805 1.19452 1.22098 0.96576 0.99613 0.99866 1.23086 1.03782 1.02598 0.89781 1.22786 1.00045 0.94602 1.03004 0.88616 0.92280 0.92162 0.89835 0.93662 0.89012 0.75187 0.90250 0.92842 0.83417 0.88357 0.92907 0.77381 0.91425 0.88380 0.87369 0.87824 0.89422 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.53 16 2 O -0.40 -9.75 9.89 -129.99 -1.28 -11.04 16 3 C 0.07 1.49 3.13 29.85 0.09 1.59 16 4 H 0.12 1.53 7.79 -2.39 -0.02 1.51 16 5 C -0.17 -3.31 9.48 71.98 0.68 -2.62 16 6 C 0.51 13.47 7.18 87.66 0.63 14.10 16 7 O -0.57 -20.78 16.51 15.96 0.26 -20.52 16 8 N -0.71 -14.79 5.32 -463.04 -2.46 -17.25 16 9 C 0.09 1.95 4.60 86.38 0.40 2.35 16 10 C 0.12 2.44 2.88 44.92 0.13 2.57 16 11 H 0.11 1.81 7.94 -2.39 -0.02 1.79 16 12 N -0.66 -17.90 5.87 -495.55 -2.91 -20.81 16 13 C 0.07 2.27 5.39 85.55 0.46 2.73 16 14 C 0.44 20.55 7.83 87.65 0.69 21.24 16 15 O -0.62 -32.66 15.89 -3.06 -0.05 -32.70 16 16 N -0.58 -29.61 5.29 -306.99 -1.62 -31.23 16 17 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 18 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 19 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 20 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 21 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.16 -3.29 4.03 -10.79 -0.04 -3.34 16 26 C -0.16 -2.45 10.18 30.62 0.31 -2.14 16 27 C -0.17 -3.49 10.21 30.62 0.31 -3.18 16 28 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.06 0.64 8.09 -2.39 -0.02 0.62 16 30 H 0.06 0.66 7.87 -2.39 -0.02 0.64 16 31 H 0.08 1.47 7.92 -2.38 -0.02 1.46 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.39 7.87 -2.39 -0.02 1.38 16 34 H 0.41 6.48 6.95 -92.71 -0.64 5.84 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.42 6.78 -2.39 -0.02 1.40 16 37 H 0.35 9.09 7.21 -89.70 -0.65 8.44 16 38 H 0.10 3.16 6.68 -2.39 -0.02 3.14 16 39 H 0.05 1.72 6.68 -2.39 -0.02 1.70 16 40 H 0.39 19.67 7.90 -92.71 -0.73 18.94 16 41 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.10 2.13 7.68 -2.39 -0.02 2.11 16 43 H 0.11 1.39 8.08 -2.39 -0.02 1.37 16 44 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -75.83 383.34 -0.60 -76.42 By element: Atomic # 1 Polarization: 46.81 SS G_CDS: -1.01 Total: 45.80 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 6.17 Total: 16.61 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.71 Total: -119.59 kcal Atomic # 8 Polarization: -63.19 SS G_CDS: -1.07 Total: -64.26 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.83 -0.60 -76.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490637743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.422 kcal (2) G-P(sol) polarization free energy of solvation -75.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds