Wall clock time and date at job start Tue Mar 31 2020 04:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 C 1.50701 * 109.46777 * 150.00026 * 3 2 1 7 7 O 1.21281 * 120.00439 * 5.00672 * 6 3 2 8 8 N 1.34775 * 119.99947 * 184.99711 * 6 3 2 9 9 C 1.46493 * 120.00347 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47795 * 180.02562 * 9 8 6 11 11 H 1.09001 * 110.27173 * 52.90433 * 10 9 8 12 12 C 1.54599 * 110.30547 * 290.72204 * 10 9 8 13 13 C 1.54940 * 102.91830 * 219.12422 * 12 10 9 14 14 N 1.48528 * 103.23086 * 37.40861 * 13 12 10 15 15 C 1.46896 * 111.00556 * 200.28205 * 14 13 12 16 16 C 1.50702 * 109.46850 * 287.39893 * 15 14 13 17 17 O 1.21294 * 120.00272 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99856 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00034 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00020 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00206 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00128 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47267 * 89.99949 * 23 21 19 25 25 H 1.48501 * 109.46953 * 210.00329 * 23 21 19 26 26 H 1.48495 * 109.47044 * 330.00160 * 23 21 19 27 27 C 1.47907 * 105.81988 * 320.79734 * 14 13 12 28 28 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 29 29 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.46785 * 60.00007 * 5 3 2 32 32 H 1.09002 * 109.47171 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.47223 * 300.00490 * 5 3 2 34 34 H 0.97004 * 120.00156 * 0.02562 * 8 6 3 35 35 H 1.09009 * 109.47306 * 300.00494 * 9 8 6 36 36 H 1.09002 * 109.46896 * 60.00194 * 9 8 6 37 37 H 1.09001 * 110.72075 * 337.47384 * 12 10 9 38 38 H 1.09001 * 110.72760 * 100.76511 * 12 10 9 39 39 H 1.09007 * 110.66440 * 278.97256 * 13 12 10 40 40 H 1.08999 * 110.81318 * 155.92004 * 13 12 10 41 41 H 1.09000 * 109.46806 * 47.39292 * 15 14 13 42 42 H 1.08994 * 109.47833 * 167.40166 * 15 14 13 43 43 H 0.96998 * 119.99980 * 359.97438 * 18 16 15 44 44 H 0.97003 * 120.00264 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.91258 * 265.97254 * 27 14 13 46 46 H 1.09002 * 110.07732 * 144.77198 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0913 8 7 4.0254 2.4040 0.9224 9 6 5.3170 2.3636 1.6125 10 6 5.8810 3.7815 1.7229 11 1 5.1444 4.4469 2.1735 12 6 6.2967 4.3037 0.3285 13 6 7.6079 5.0745 0.6239 14 7 8.2641 4.2425 1.6648 15 6 9.2589 5.0227 2.4126 16 6 10.4633 5.2685 1.5407 17 8 10.4904 4.8357 0.4079 18 7 11.5103 5.9691 2.0197 19 6 12.6062 6.1922 1.2267 20 1 12.6303 5.8069 0.2180 21 6 13.6855 6.9149 1.7202 22 7 13.6559 7.3842 2.9473 23 14 15.1783 7.2195 0.6395 24 1 14.9938 8.4856 -0.1142 25 1 16.3920 7.3215 1.4892 26 1 15.3360 6.0934 -0.3156 27 6 7.1773 3.7780 2.5540 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.2568 1.8015 -1.9562 32 1 2.6605 2.7675 -1.4424 33 1 2.8829 1.0776 -1.9564 34 1 3.6645 3.2514 0.6180 35 1 5.1826 1.9476 2.6110 36 1 6.0105 1.7393 1.0491 37 1 6.4822 3.4746 -0.3543 38 1 5.5376 4.9742 -0.0745 39 1 7.3901 6.0709 1.0087 40 1 8.2306 5.1359 -0.2686 41 1 8.8240 5.9773 2.7089 42 1 9.5610 4.4695 3.3018 43 1 11.4885 6.3154 2.9255 44 1 14.4095 7.8884 3.2921 45 1 7.0765 4.4553 3.4021 46 1 7.3888 2.7690 2.9079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493189125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:22 Heat of formation + Delta-G solvation = -112.599156 kcal Electronic energy + Delta-G solvation = -25740.216546 eV Core-core repulsion = 21858.020949 eV Total energy + Delta-G solvation = -3882.195597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33470 -39.25994 -38.02290 -37.53109 -35.13387 -33.87499 -32.63669 -31.50821 -31.08873 -29.35030 -27.26507 -27.18863 -25.48602 -24.18823 -23.55980 -21.32599 -20.75490 -20.14108 -19.18600 -17.86379 -17.77714 -17.38735 -16.43654 -16.04503 -15.72911 -15.46328 -15.21111 -14.97370 -14.61770 -14.49226 -14.11432 -13.91606 -13.70394 -13.46976 -13.34751 -13.07297 -12.83070 -12.57713 -12.39108 -12.21954 -11.99134 -11.72742 -11.60157 -11.46699 -11.36405 -11.14955 -10.91217 -10.88111 -10.64431 -10.40992 -10.37766 -10.19999 -9.78652 -9.47407 -9.30542 -8.46236 -7.97814 -7.91403 -6.39798 -3.80411 2.35739 2.55414 3.18912 3.27432 3.33663 3.57349 3.93287 4.04505 4.26545 4.27621 4.41889 4.49097 4.54907 4.57421 4.73573 4.84155 4.91937 5.07307 5.12032 5.22101 5.23651 5.25405 5.26136 5.34917 5.39862 5.55354 5.62950 5.65373 5.76832 5.78836 5.84044 5.88851 6.00959 6.13659 6.23118 6.30242 6.40262 6.58646 7.16772 7.20842 7.24083 7.56992 7.96768 8.08519 8.64410 9.20521 9.57037 10.09310 10.78087 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.001938 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.515229 B =14445.895351 C =14679.716362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.085 0.915 5 C -0.171 4.171 6 C 0.512 3.488 7 O -0.518 6.518 8 N -0.726 5.726 9 C 0.131 3.869 10 C -0.110 4.110 11 H 0.080 0.920 12 C -0.119 4.119 13 C 0.041 3.959 14 N -0.491 5.491 15 C 0.037 3.963 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.042 3.958 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.399 0.601 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.046 0.954 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.435 -5.276 -1.884 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.103 0.897 5 C -0.229 4.229 6 C 0.296 3.704 7 O -0.392 6.392 8 N -0.380 5.380 9 C 0.007 3.993 10 C -0.129 4.129 11 H 0.098 0.902 12 C -0.157 4.157 13 C -0.087 4.087 14 N -0.215 5.215 15 C -0.095 4.095 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.087 4.087 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.523 -6.871 -2.483 26.548 hybrid contribution 0.007 1.881 0.476 1.940 sum -25.516 -4.990 -2.007 26.077 Atomic orbital electron populations 1.22889 0.80578 1.03347 1.00008 1.88069 1.19673 1.25102 1.94926 1.21941 0.93503 0.86908 0.96843 0.89679 1.22236 1.03519 1.02184 0.94941 1.20368 0.86215 0.84157 0.79659 1.90747 1.69116 1.29697 1.49624 1.45933 1.22182 1.09245 1.60645 1.21509 0.83560 0.96737 0.97448 1.22247 0.97444 0.95738 0.97467 0.90196 1.22625 0.96973 1.00283 0.95847 1.23268 0.94138 0.93796 0.97495 1.64461 1.10450 1.35821 1.10769 1.22063 0.93806 0.96679 0.96951 1.19715 0.84740 0.83847 0.88623 1.90507 1.81569 1.54187 1.19745 1.41863 1.15001 1.47818 1.15679 1.19696 0.93298 1.31604 0.98125 0.87947 1.25250 0.99369 0.96944 0.96434 1.69612 1.32672 1.37026 1.15148 0.85861 0.80229 0.78862 0.79361 1.20484 1.20947 1.19423 1.22851 0.89486 1.01613 0.94749 0.93788 0.89079 0.93834 0.91193 0.90795 0.90851 0.76670 0.91306 0.90450 0.90306 0.91355 0.94408 0.88371 0.93261 0.89358 0.77550 0.91933 0.93530 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.67 9.89 -55.09 -0.54 -4.22 16 3 C 0.07 0.55 3.13 -27.88 -0.09 0.46 16 4 H 0.09 0.43 7.79 -51.93 -0.40 0.02 16 5 C -0.17 -1.01 9.48 37.16 0.35 -0.66 16 6 C 0.51 5.59 7.18 -10.99 -0.08 5.51 16 7 O -0.52 -8.29 16.51 -14.30 -0.24 -8.52 16 8 N -0.73 -6.05 5.39 -60.30 -0.32 -6.37 16 9 C 0.13 1.30 4.76 -4.05 -0.02 1.28 16 10 C -0.11 -1.03 3.03 -89.27 -0.27 -1.30 16 11 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 12 C -0.12 -1.27 6.41 -24.87 -0.16 -1.43 16 13 C 0.04 0.61 5.94 -1.90 -0.01 0.59 16 14 N -0.49 -8.01 4.90 -231.90 -1.14 -9.14 16 15 C 0.04 0.65 5.19 -4.98 -0.03 0.63 16 16 C 0.45 10.55 7.61 -10.98 -0.08 10.47 16 17 O -0.58 -15.63 14.64 5.55 0.08 -15.55 16 18 N -0.57 -14.41 5.29 -10.96 -0.06 -14.46 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 23 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.04 0.50 6.32 -2.76 -0.02 0.48 16 28 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 31 H 0.07 0.31 7.87 -51.93 -0.41 -0.09 16 32 H 0.07 0.31 7.93 -51.93 -0.41 -0.10 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 2.11 8.19 -40.82 -0.33 1.77 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.08 0.94 8.00 -51.93 -0.42 0.53 16 37 H 0.08 0.92 7.76 -51.93 -0.40 0.52 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.54 7.81 -51.92 -0.41 0.13 16 40 H 0.10 1.78 7.10 -51.93 -0.37 1.41 16 41 H 0.05 0.79 7.83 -51.93 -0.41 0.38 16 42 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 43 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.05 0.51 7.77 -51.93 -0.40 0.10 16 46 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -35.58 379.44 -7.91 -43.48 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.56 Total: 7.56 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 0.45 Total: 9.29 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.80 Total: -53.88 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.70 Total: -28.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.58 -7.91 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493189125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.118 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds