Wall clock time and date at job start Tue Mar 31 2020 04:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 C 1.50701 * 109.46777 * 150.00026 * 3 2 1 7 7 O 1.21281 * 120.00439 * 5.00672 * 6 3 2 8 8 N 1.34775 * 119.99947 * 184.99711 * 6 3 2 9 9 C 1.46493 * 120.00347 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47795 * 180.02562 * 9 8 6 11 11 H 1.09001 * 110.27173 * 52.90433 * 10 9 8 12 12 C 1.54599 * 110.30547 * 290.72204 * 10 9 8 13 13 C 1.54940 * 102.91830 * 219.12422 * 12 10 9 14 14 N 1.48528 * 103.23086 * 37.40861 * 13 12 10 15 15 C 1.46896 * 111.00556 * 200.28205 * 14 13 12 16 16 C 1.50702 * 109.46850 * 287.39893 * 15 14 13 17 17 O 1.21294 * 120.00272 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99856 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00034 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00020 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00206 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99893 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00128 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47267 * 89.99949 * 23 21 19 25 25 H 1.48501 * 109.46953 * 210.00329 * 23 21 19 26 26 H 1.48495 * 109.47044 * 330.00160 * 23 21 19 27 27 C 1.47907 * 105.81988 * 320.79734 * 14 13 12 28 28 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 29 29 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.46785 * 60.00007 * 5 3 2 32 32 H 1.09002 * 109.47171 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.47223 * 300.00490 * 5 3 2 34 34 H 0.97004 * 120.00156 * 0.02562 * 8 6 3 35 35 H 1.09009 * 109.47306 * 300.00494 * 9 8 6 36 36 H 1.09002 * 109.46896 * 60.00194 * 9 8 6 37 37 H 1.09001 * 110.72075 * 337.47384 * 12 10 9 38 38 H 1.09001 * 110.72760 * 100.76511 * 12 10 9 39 39 H 1.09007 * 110.66440 * 278.97256 * 13 12 10 40 40 H 1.08999 * 110.81318 * 155.92004 * 13 12 10 41 41 H 1.09000 * 109.46806 * 47.39292 * 15 14 13 42 42 H 1.08994 * 109.47833 * 167.40166 * 15 14 13 43 43 H 0.96998 * 119.99980 * 359.97438 * 18 16 15 44 44 H 0.97003 * 120.00264 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.91258 * 265.97254 * 27 14 13 46 46 H 1.09002 * 110.07732 * 144.77198 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0913 8 7 4.0254 2.4040 0.9224 9 6 5.3170 2.3636 1.6125 10 6 5.8810 3.7815 1.7229 11 1 5.1444 4.4469 2.1735 12 6 6.2967 4.3037 0.3285 13 6 7.6079 5.0745 0.6239 14 7 8.2641 4.2425 1.6648 15 6 9.2589 5.0227 2.4126 16 6 10.4633 5.2685 1.5407 17 8 10.4904 4.8357 0.4079 18 7 11.5103 5.9691 2.0197 19 6 12.6062 6.1922 1.2267 20 1 12.6303 5.8069 0.2180 21 6 13.6855 6.9149 1.7202 22 7 13.6559 7.3842 2.9473 23 14 15.1783 7.2195 0.6395 24 1 14.9938 8.4856 -0.1142 25 1 16.3920 7.3215 1.4892 26 1 15.3360 6.0934 -0.3156 27 6 7.1773 3.7780 2.5540 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.2568 1.8015 -1.9562 32 1 2.6605 2.7675 -1.4424 33 1 2.8829 1.0776 -1.9564 34 1 3.6645 3.2514 0.6180 35 1 5.1826 1.9476 2.6110 36 1 6.0105 1.7393 1.0491 37 1 6.4822 3.4746 -0.3543 38 1 5.5376 4.9742 -0.0745 39 1 7.3901 6.0709 1.0087 40 1 8.2306 5.1359 -0.2686 41 1 8.8240 5.9773 2.7089 42 1 9.5610 4.4695 3.3018 43 1 11.4885 6.3154 2.9255 44 1 14.4095 7.8884 3.2921 45 1 7.0765 4.4553 3.4021 46 1 7.3888 2.7690 2.9079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493189125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:21 Heat of formation + Delta-G solvation = -141.390862 kcal Electronic energy + Delta-G solvation = -25741.465048 eV Core-core repulsion = 21858.020949 eV Total energy + Delta-G solvation = -3883.444100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16726 -40.53886 -39.34629 -38.50319 -36.21978 -35.79694 -33.60293 -33.19772 -32.18836 -30.31615 -28.62406 -27.68328 -26.73530 -25.64985 -24.32241 -22.48893 -21.59457 -20.99713 -20.97249 -19.87941 -18.49068 -18.09670 -17.77032 -17.18837 -16.69434 -16.51500 -16.27857 -16.08252 -16.00782 -15.77502 -15.54305 -15.20468 -14.65748 -14.59095 -14.23108 -14.17489 -13.72644 -13.55785 -13.46182 -13.30305 -13.05857 -12.92410 -12.89057 -12.72180 -12.41331 -12.40580 -12.14296 -12.10946 -12.05741 -11.87297 -11.56615 -11.46485 -11.05257 -10.52525 -10.29976 -10.12464 -9.99898 -9.24447 -8.46092 -5.94601 1.37711 1.41252 1.54087 1.55435 1.88067 2.07148 2.29044 2.86125 3.03599 3.20609 3.42520 3.55409 3.68924 3.74787 3.88546 3.94686 4.05445 4.30245 4.33385 4.37736 4.43084 4.46592 4.51795 4.56361 4.57287 4.68465 4.70483 4.76332 4.83069 4.87655 4.88354 4.95813 5.10583 5.19126 5.21252 5.28015 5.41098 5.41712 5.89530 6.03908 6.08505 6.13856 6.55960 6.62061 7.14108 7.22837 7.57857 8.14419 8.71370 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.043032 B = 0.001938 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.515229 B =14445.895351 C =14679.716362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.071 3.929 4 H 0.121 0.879 5 C -0.167 4.167 6 C 0.505 3.495 7 O -0.579 6.579 8 N -0.707 5.707 9 C 0.136 3.864 10 C -0.091 4.091 11 H 0.116 0.884 12 C -0.108 4.108 13 C 0.037 3.963 14 N -0.522 5.522 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.617 6.617 18 N -0.576 5.576 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.275 1.275 27 C 0.039 3.961 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.419 0.581 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.068 0.932 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.631 -3.688 -1.374 28.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.010 3.990 4 H 0.139 0.861 5 C -0.225 4.225 6 C 0.292 3.708 7 O -0.458 6.458 8 N -0.362 5.362 9 C 0.012 3.988 10 C -0.111 4.111 11 H 0.134 0.866 12 C -0.146 4.146 13 C -0.091 4.091 14 N -0.247 5.247 15 C -0.081 4.081 16 C 0.228 3.772 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.089 4.089 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.256 0.744 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.756 -5.231 -1.961 28.312 hybrid contribution 0.660 1.359 0.309 1.543 sum -27.095 -3.872 -1.652 27.420 Atomic orbital electron populations 1.23084 0.78615 1.04085 1.01567 1.88022 1.21985 1.26771 1.95192 1.22097 0.92102 0.86975 0.97827 0.86103 1.22246 1.04220 1.02512 0.93474 1.21108 0.87233 0.83630 0.78855 1.90717 1.70790 1.31967 1.52355 1.45754 1.21200 1.09667 1.59539 1.21324 0.83761 0.96707 0.96996 1.22152 0.96908 0.95688 0.96306 0.86585 1.22573 0.95696 0.99883 0.96449 1.23210 0.95256 0.94988 0.95613 1.64350 1.12121 1.36121 1.12108 1.21908 0.91768 0.98494 0.95967 1.20833 0.85677 0.81929 0.88724 1.90480 1.82566 1.55320 1.21918 1.41934 1.15168 1.48594 1.15672 1.19644 0.95267 1.33432 0.97890 0.90498 1.26018 1.01471 0.96043 0.97738 1.69669 1.33590 1.36889 1.16014 0.84937 0.77065 0.78623 0.77759 1.19521 1.19517 1.20002 1.22930 0.89184 1.01691 0.95057 0.91809 0.88970 0.92558 0.89271 0.88605 0.93335 0.74380 0.91493 0.93391 0.91937 0.87697 0.93313 0.92785 0.90868 0.87614 0.77043 0.91334 0.91391 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -7.85 9.89 -129.99 -1.29 -9.14 16 3 C 0.07 0.97 3.13 29.85 0.09 1.07 16 4 H 0.12 0.75 7.79 -2.39 -0.02 0.73 16 5 C -0.17 -1.59 9.48 71.98 0.68 -0.91 16 6 C 0.51 10.59 7.18 87.66 0.63 11.22 16 7 O -0.58 -19.09 16.51 15.95 0.26 -18.82 16 8 N -0.71 -10.22 5.39 -463.07 -2.50 -12.72 16 9 C 0.14 2.52 4.76 86.38 0.41 2.93 16 10 C -0.09 -1.45 3.03 -9.92 -0.03 -1.48 16 11 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 12 C -0.11 -2.07 6.41 31.80 0.20 -1.86 16 13 C 0.04 1.08 5.94 86.65 0.51 1.59 16 14 N -0.52 -16.67 4.90 -887.59 -4.35 -21.03 16 15 C 0.05 1.74 5.19 85.56 0.44 2.18 16 16 C 0.44 21.37 7.61 87.66 0.67 22.03 16 17 O -0.62 -34.91 14.64 -3.07 -0.04 -34.95 16 18 N -0.58 -29.95 5.29 -306.97 -1.62 -31.58 16 19 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.95 13.05 21.66 0.28 -49.67 16 23 Si 0.99 43.40 29.55 68.60 2.03 45.42 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.04 0.86 6.32 86.44 0.55 1.40 16 28 H 0.06 0.36 7.87 -2.39 -0.02 0.34 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.40 8.08 -2.39 -0.02 0.38 16 31 H 0.09 0.52 7.87 -2.39 -0.02 0.50 16 32 H 0.10 0.46 7.93 -2.39 -0.02 0.44 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.42 2.76 8.19 -92.71 -0.76 2.00 16 35 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.05 1.19 8.00 -2.39 -0.02 1.17 16 37 H 0.06 1.42 7.76 -2.39 -0.02 1.40 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.29 7.81 -2.38 -0.02 1.28 16 40 H 0.05 2.04 7.10 -2.39 -0.02 2.03 16 41 H 0.07 2.19 7.83 -2.39 -0.02 2.18 16 42 H 0.11 3.28 8.08 -2.39 -0.02 3.26 16 43 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 44 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 45 H 0.07 1.23 7.77 -2.39 -0.02 1.21 16 46 H 0.08 1.77 7.68 -2.39 -0.02 1.75 16 Total: -1.00 -82.41 379.44 -1.06 -83.47 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.50 Total: 27.95 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 6.67 Total: 21.05 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -8.19 Total: -114.98 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -1.07 Total: -62.91 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -82.41 -1.06 -83.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493189125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.918 kcal (2) G-P(sol) polarization free energy of solvation -82.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds