Wall clock time and date at job start Tue Mar 31 2020 04:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 H 1.08997 * 109.47138 * 55.37677 * 3 2 1 5 5 C 1.52996 * 109.46883 * 175.37700 * 3 2 1 6 6 N 1.46504 * 109.46987 * 175.00132 * 5 3 2 7 7 C 1.34779 * 120.00309 * 180.02562 * 6 5 3 8 8 O 1.21287 * 119.99646 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00106 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.82221 * 55.69412 * 9 7 6 11 11 C 1.54384 * 109.82609 * 294.80774 * 9 7 6 12 12 C 1.55448 * 102.18561 * 219.18434 * 11 9 7 13 13 C 1.54952 * 100.99026 * 34.04056 * 12 11 9 14 14 O 1.43238 * 109.82736 * 176.58475 * 9 7 6 15 15 N 1.46903 * 109.47160 * 295.37488 * 3 2 1 16 16 C 1.46898 * 110.99781 * 302.88867 * 15 3 2 17 17 C 1.50701 * 109.46896 * 185.63395 * 16 15 3 18 18 O 1.21297 * 119.99811 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00027 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99812 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00240 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99595 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00516 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99769 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47130 * 89.99736 * 24 22 20 26 26 H 1.48502 * 109.47045 * 209.99731 * 24 22 20 27 27 H 1.48501 * 109.47198 * 329.99937 * 24 22 20 28 28 H 1.08999 * 109.47099 * 58.73134 * 1 2 3 29 29 H 1.09004 * 109.46948 * 178.72730 * 1 2 3 30 30 H 1.08996 * 109.47204 * 298.72937 * 1 2 3 31 31 H 1.09005 * 109.47182 * 240.00029 * 2 1 3 32 32 H 1.08996 * 109.47126 * 120.00058 * 2 1 3 33 33 H 1.08998 * 109.47065 * 294.99460 * 5 3 2 34 34 H 1.08993 * 109.47746 * 55.00275 * 5 3 2 35 35 H 0.97004 * 119.99831 * 359.97438 * 6 5 3 36 36 H 1.08997 * 110.85096 * 337.32544 * 11 9 7 37 37 H 1.08999 * 110.84361 * 100.94041 * 11 9 7 38 38 H 1.09002 * 111.06193 * 276.12576 * 12 11 9 39 39 H 1.09001 * 111.18716 * 152.01153 * 12 11 9 40 40 H 1.08996 * 110.30810 * 204.69081 * 13 12 11 41 41 H 1.08995 * 110.30450 * 82.51805 * 13 12 11 42 42 H 1.00908 * 110.99643 * 66.84155 * 15 3 2 43 43 H 1.09000 * 109.47592 * 305.63421 * 16 15 3 44 44 H 1.09003 * 109.47503 * 65.64029 * 16 15 3 45 45 H 0.96995 * 120.00170 * 0.02562 * 19 17 16 46 46 H 0.96996 * 120.00256 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5655 1.4440 0.1163 6 7 4.0630 2.8168 -0.0036 7 6 5.3862 3.0628 0.0686 8 8 6.1650 2.1477 0.2333 9 6 5.8978 4.4750 -0.0541 10 1 5.4178 5.1082 0.6921 11 6 5.6033 5.0176 -1.4691 12 6 6.8941 5.8234 -1.7868 13 6 7.9628 4.9675 -1.0612 14 8 7.3179 4.4951 0.1323 15 7 1.6436 2.1020 -1.2514 16 6 2.1483 1.3650 -2.4176 17 6 1.8428 2.1410 -3.6728 18 8 1.2623 3.2037 -3.6027 19 7 2.2157 1.6547 -4.8733 20 6 1.9382 2.3609 -6.0151 21 1 1.4214 3.3071 -5.9528 22 6 2.3221 1.8592 -7.2528 23 7 2.9507 0.7076 -7.3288 24 14 1.9448 2.8218 -8.8086 25 1 3.0729 3.7397 -9.1086 26 1 1.7590 1.8792 -9.9410 27 1 0.7025 3.6116 -8.6131 28 1 -0.3633 0.5334 -0.8784 29 1 -0.3633 -1.0275 -0.0228 30 1 -0.3633 0.4939 0.9011 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8565 1.0353 1.0839 34 1 3.9912 0.8326 -0.6793 35 1 3.4401 3.5486 -0.1356 36 1 5.4720 4.2004 -2.1783 37 1 4.7297 5.6693 -1.4605 38 1 6.8427 6.8274 -1.3655 39 1 7.0819 5.8594 -2.8599 40 1 8.8284 5.5791 -0.8068 41 1 8.2629 4.1271 -1.6870 42 1 0.6419 2.2135 -1.2998 43 1 3.2263 1.2329 -2.3254 44 1 1.6656 0.3890 -2.4674 45 1 2.6802 0.8050 -4.9293 46 1 3.2183 0.3573 -8.1928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494936914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:11 Heat of formation + Delta-G solvation = -124.402214 kcal Electronic energy + Delta-G solvation = -27065.720052 eV Core-core repulsion = 23183.012635 eV Total energy + Delta-G solvation = -3882.707416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32864 -39.00612 -38.12543 -37.17504 -34.14942 -33.89324 -32.19850 -31.79017 -31.19118 -30.24870 -28.33383 -26.56039 -24.41053 -23.97955 -22.67467 -21.85316 -20.52186 -19.95706 -19.11272 -17.95330 -17.51911 -16.89374 -16.78648 -15.88506 -15.68733 -15.48373 -15.01101 -14.75738 -14.41872 -14.26566 -14.09681 -13.86379 -13.60943 -13.45053 -13.29215 -13.15048 -12.54297 -12.33897 -12.05311 -11.92755 -11.82044 -11.72011 -11.52936 -11.41922 -11.34295 -11.10075 -11.07259 -10.89125 -10.79228 -10.42188 -10.24978 -10.24308 -9.53120 -9.26476 -8.93241 -8.53732 -8.10875 -7.98530 -6.43877 -3.85026 2.70633 3.05420 3.15292 3.24284 3.29560 3.85258 3.88390 4.07137 4.29862 4.34454 4.61388 4.69901 4.71141 4.87290 4.96211 4.98327 5.04067 5.14016 5.22706 5.23923 5.28707 5.41944 5.56378 5.56856 5.60384 5.67428 5.68257 5.74261 5.78348 5.80027 5.86118 5.96202 6.00692 6.06586 6.17762 6.24343 6.52541 6.77327 7.11498 7.52450 7.54420 7.66600 8.03566 8.35197 8.58639 9.15429 9.52144 10.03267 10.73766 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.008950 B = 0.004422 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.794107 B = 6329.776525 C = 8725.446827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.090 0.910 5 C 0.128 3.872 6 N -0.711 5.711 7 C 0.499 3.501 8 O -0.534 6.534 9 C 0.067 3.933 10 H 0.104 0.896 11 C -0.145 4.145 12 C -0.155 4.155 13 C 0.048 3.952 14 O -0.356 6.356 15 N -0.658 5.658 16 C 0.044 3.956 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.352 0.648 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.391 0.609 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 3.582 14.637 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.365 5.365 7 C 0.284 3.716 8 O -0.410 6.410 9 C 0.005 3.995 10 H 0.122 0.878 11 C -0.183 4.183 12 C -0.192 4.192 13 C -0.029 4.029 14 O -0.273 6.273 15 N -0.291 5.291 16 C -0.089 4.089 17 C 0.227 3.773 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.246 0.754 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.173 0.827 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.080 3.921 14.817 15.633 hybrid contribution -0.863 -0.660 -1.238 1.647 sum 2.217 3.262 13.579 14.140 Atomic orbital electron populations 1.21755 0.95261 1.01999 1.01997 1.22212 0.96756 0.97973 1.03103 1.21915 0.94267 0.93552 0.93986 0.89235 1.21383 0.92843 0.83749 1.01703 1.45768 1.06985 1.10124 1.73620 1.20989 0.82477 0.91502 0.76677 1.90694 1.55974 1.46103 1.48247 1.22614 0.84088 0.93458 0.99306 0.87819 1.23140 0.99505 1.01007 0.94632 1.23300 0.94224 0.99445 1.02259 1.23474 0.95852 0.97091 0.86443 1.88484 1.16082 1.87225 1.35541 1.60198 1.19459 1.49854 0.99541 1.21761 1.01148 0.95340 0.90639 1.19795 0.85268 0.87937 0.84260 1.90514 1.46024 1.23695 1.86537 1.41875 1.51529 1.21791 1.04860 1.19678 1.35316 1.04742 0.83182 0.87961 1.25259 0.96848 0.96365 0.99420 1.69610 1.39603 1.18594 1.26401 0.85876 0.78996 0.78969 0.80551 1.20410 1.20933 1.19431 0.92445 0.92497 0.92568 0.91006 0.91318 0.91366 0.91482 0.75377 0.89490 0.88620 0.90109 0.89311 0.89352 0.91850 0.82749 0.89617 0.93438 0.77546 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.70 37.16 0.36 -1.07 16 2 C -0.16 -1.57 5.10 -26.73 -0.14 -1.71 16 3 C 0.07 0.78 2.70 -67.71 -0.18 0.60 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.13 1.55 4.76 -4.04 -0.02 1.53 16 6 N -0.71 -8.97 5.36 -60.29 -0.32 -9.29 16 7 C 0.50 7.40 7.03 -10.98 -0.08 7.32 16 8 O -0.53 -10.13 16.52 -14.10 -0.23 -10.37 16 9 C 0.07 0.83 3.94 -27.16 -0.11 0.72 16 10 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.14 -1.66 6.53 -24.71 -0.16 -1.82 16 12 C -0.15 -1.52 7.16 -24.40 -0.17 -1.70 16 13 C 0.05 0.54 7.78 38.19 0.30 0.83 16 14 O -0.36 -5.07 10.56 -54.88 -0.58 -5.65 16 15 N -0.66 -9.04 5.32 -107.99 -0.57 -9.62 16 16 C 0.04 0.72 5.31 -4.98 -0.03 0.69 16 17 C 0.44 9.94 7.83 -10.98 -0.09 9.85 16 18 O -0.58 -14.94 15.90 5.54 0.09 -14.85 16 19 N -0.56 -13.97 5.29 -10.96 -0.06 -14.02 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 24 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 H 0.06 0.61 6.87 -51.93 -0.36 0.25 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.78 6.23 -51.93 -0.32 0.46 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.93 6.61 -51.93 -0.34 0.59 16 35 H 0.41 4.71 8.14 -40.82 -0.33 4.38 16 36 H 0.09 1.20 7.84 -51.93 -0.41 0.79 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.35 4.98 7.29 -39.29 -0.29 4.69 16 43 H 0.09 1.41 6.22 -51.93 -0.32 1.09 16 44 H 0.05 0.73 6.48 -51.93 -0.34 0.39 16 45 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -33.20 374.51 -8.08 -41.28 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -7.19 Total: 17.31 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.55 Total: 7.45 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.23 Total: -56.55 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.72 Total: -30.86 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.20 -8.08 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494936914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.125 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds