Wall clock time and date at job start Tue Mar 31 2020 04:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 H 1.08997 * 109.47138 * 55.37677 * 3 2 1 5 5 C 1.52996 * 109.46883 * 175.37700 * 3 2 1 6 6 N 1.46504 * 109.46987 * 175.00132 * 5 3 2 7 7 C 1.34779 * 120.00309 * 180.02562 * 6 5 3 8 8 O 1.21287 * 119.99646 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00106 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.82221 * 55.69412 * 9 7 6 11 11 C 1.54384 * 109.82609 * 294.80774 * 9 7 6 12 12 C 1.55448 * 102.18561 * 219.18434 * 11 9 7 13 13 C 1.54952 * 100.99026 * 34.04056 * 12 11 9 14 14 O 1.43238 * 109.82736 * 176.58475 * 9 7 6 15 15 N 1.46903 * 109.47160 * 295.37488 * 3 2 1 16 16 C 1.46898 * 110.99781 * 302.88867 * 15 3 2 17 17 C 1.50701 * 109.46896 * 185.63395 * 16 15 3 18 18 O 1.21297 * 119.99811 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00027 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99812 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00240 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99595 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00516 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99769 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47130 * 89.99736 * 24 22 20 26 26 H 1.48502 * 109.47045 * 209.99731 * 24 22 20 27 27 H 1.48501 * 109.47198 * 329.99937 * 24 22 20 28 28 H 1.08999 * 109.47099 * 58.73134 * 1 2 3 29 29 H 1.09004 * 109.46948 * 178.72730 * 1 2 3 30 30 H 1.08996 * 109.47204 * 298.72937 * 1 2 3 31 31 H 1.09005 * 109.47182 * 240.00029 * 2 1 3 32 32 H 1.08996 * 109.47126 * 120.00058 * 2 1 3 33 33 H 1.08998 * 109.47065 * 294.99460 * 5 3 2 34 34 H 1.08993 * 109.47746 * 55.00275 * 5 3 2 35 35 H 0.97004 * 119.99831 * 359.97438 * 6 5 3 36 36 H 1.08997 * 110.85096 * 337.32544 * 11 9 7 37 37 H 1.08999 * 110.84361 * 100.94041 * 11 9 7 38 38 H 1.09002 * 111.06193 * 276.12576 * 12 11 9 39 39 H 1.09001 * 111.18716 * 152.01153 * 12 11 9 40 40 H 1.08996 * 110.30810 * 204.69081 * 13 12 11 41 41 H 1.08995 * 110.30450 * 82.51805 * 13 12 11 42 42 H 1.00908 * 110.99643 * 66.84155 * 15 3 2 43 43 H 1.09000 * 109.47592 * 305.63421 * 16 15 3 44 44 H 1.09003 * 109.47503 * 65.64029 * 16 15 3 45 45 H 0.96995 * 120.00170 * 0.02562 * 19 17 16 46 46 H 0.96996 * 120.00256 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5655 1.4440 0.1163 6 7 4.0630 2.8168 -0.0036 7 6 5.3862 3.0628 0.0686 8 8 6.1650 2.1477 0.2333 9 6 5.8978 4.4750 -0.0541 10 1 5.4178 5.1082 0.6921 11 6 5.6033 5.0176 -1.4691 12 6 6.8941 5.8234 -1.7868 13 6 7.9628 4.9675 -1.0612 14 8 7.3179 4.4951 0.1323 15 7 1.6436 2.1020 -1.2514 16 6 2.1483 1.3650 -2.4176 17 6 1.8428 2.1410 -3.6728 18 8 1.2623 3.2037 -3.6027 19 7 2.2157 1.6547 -4.8733 20 6 1.9382 2.3609 -6.0151 21 1 1.4214 3.3071 -5.9528 22 6 2.3221 1.8592 -7.2528 23 7 2.9507 0.7076 -7.3288 24 14 1.9448 2.8218 -8.8086 25 1 3.0729 3.7397 -9.1086 26 1 1.7590 1.8792 -9.9410 27 1 0.7025 3.6116 -8.6131 28 1 -0.3633 0.5334 -0.8784 29 1 -0.3633 -1.0275 -0.0228 30 1 -0.3633 0.4939 0.9011 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8565 1.0353 1.0839 34 1 3.9912 0.8326 -0.6793 35 1 3.4401 3.5486 -0.1356 36 1 5.4720 4.2004 -2.1783 37 1 4.7297 5.6693 -1.4605 38 1 6.8427 6.8274 -1.3655 39 1 7.0819 5.8594 -2.8599 40 1 8.8284 5.5791 -0.8068 41 1 8.2629 4.1271 -1.6870 42 1 0.6419 2.2135 -1.2998 43 1 3.2263 1.2329 -2.3254 44 1 1.6656 0.3890 -2.4674 45 1 2.6802 0.8050 -4.9293 46 1 3.2183 0.3573 -8.1928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494936914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:11 Heat of formation + Delta-G solvation = -150.051979 kcal Electronic energy + Delta-G solvation = -27066.832309 eV Core-core repulsion = 23183.012635 eV Total energy + Delta-G solvation = -3883.819674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40000 -40.37551 -39.46124 -38.47020 -35.94614 -35.20614 -33.30016 -33.13338 -32.75890 -31.21562 -29.39847 -28.03234 -26.08865 -25.01252 -23.57610 -22.72561 -21.78334 -21.19409 -20.51973 -19.85773 -18.56190 -18.30926 -17.82051 -17.13755 -16.80863 -16.70548 -16.48022 -16.11173 -15.89310 -15.59632 -15.38502 -15.14926 -14.80814 -14.54970 -14.36079 -14.14749 -14.00466 -13.53666 -13.51615 -13.15618 -12.99130 -12.89028 -12.78746 -12.69630 -12.40717 -12.31989 -12.20945 -12.12641 -11.95971 -11.84523 -11.67471 -11.48548 -11.28596 -10.36984 -10.32157 -10.04070 -10.00316 -9.34155 -8.45710 -5.94463 1.38037 1.41782 1.54392 1.56145 2.04061 2.06915 2.29074 2.89080 2.97074 3.21756 3.43466 3.52844 3.71057 3.77143 3.84083 4.01734 4.11157 4.15599 4.16596 4.28430 4.35304 4.37209 4.46680 4.53098 4.57334 4.72859 4.74263 4.77938 4.79421 4.88629 4.92700 4.93478 5.11619 5.14856 5.25151 5.37599 5.41418 5.45726 5.83339 5.88142 6.08564 6.41477 6.59729 6.60396 7.13543 7.24721 7.57626 8.12018 8.71815 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.008950 B = 0.004422 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.794107 B = 6329.776525 C = 8725.446827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.115 0.885 5 C 0.125 3.875 6 N -0.700 5.700 7 C 0.492 3.508 8 O -0.584 6.584 9 C 0.067 3.933 10 H 0.136 0.864 11 C -0.144 4.144 12 C -0.146 4.146 13 C 0.040 3.960 14 O -0.381 6.381 15 N -0.661 5.661 16 C 0.063 3.937 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.577 5.577 20 C -0.329 4.329 21 H 0.082 0.918 22 C -0.015 4.015 23 N -0.924 5.924 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.274 1.274 27 H -0.270 1.270 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.418 0.582 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.045 0.955 42 H 0.353 0.647 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.393 0.607 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 4.491 15.478 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.197 4.197 3 C -0.025 4.025 4 H 0.133 0.867 5 C 0.001 3.999 6 N -0.353 5.353 7 C 0.278 3.722 8 O -0.464 6.464 9 C 0.006 3.994 10 H 0.153 0.847 11 C -0.182 4.182 12 C -0.183 4.183 13 C -0.035 4.035 14 O -0.299 6.299 15 N -0.294 5.294 16 C -0.069 4.069 17 C 0.230 3.770 18 O -0.500 6.500 19 N -0.214 5.214 20 C -0.459 4.459 21 H 0.100 0.900 22 C -0.214 4.214 23 N -0.565 5.565 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.195 1.195 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.064 0.936 42 H 0.174 0.826 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.226 0.774 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.443 4.830 15.673 16.582 hybrid contribution -0.689 -0.956 -1.421 1.846 sum 1.754 3.874 14.252 14.873 Atomic orbital electron populations 1.21739 0.94661 1.02339 1.02032 1.22176 0.97141 0.97009 1.03354 1.21943 0.93089 0.94489 0.92971 0.86683 1.21454 0.93749 0.83240 1.01461 1.45750 1.06550 1.10642 1.72337 1.21558 0.82684 0.92196 0.75716 1.90664 1.57185 1.47712 1.50801 1.22799 0.83667 0.92247 1.00661 0.84664 1.23125 1.01226 1.00484 0.93333 1.23312 0.92434 1.00046 1.02529 1.23644 0.97055 0.97073 0.85768 1.88455 1.17075 1.87579 1.36836 1.60152 1.19485 1.50159 0.99649 1.21501 1.01421 0.95191 0.88833 1.20792 0.83320 0.87624 0.85277 1.90484 1.47008 1.25253 1.87259 1.41974 1.52329 1.21903 1.05243 1.19665 1.36630 1.04788 0.84804 0.90000 1.26042 0.96264 0.97202 1.01896 1.69684 1.39947 1.19535 1.27327 0.84941 0.78763 0.77820 0.76920 1.19722 1.19849 1.19459 0.93954 0.91998 0.91030 0.92349 0.89543 0.90411 0.93522 0.74511 0.92601 0.86804 0.87609 0.88916 0.86920 0.93634 0.82645 0.89494 0.91741 0.77421 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.70 71.98 0.70 -1.76 16 2 C -0.16 -2.72 5.10 30.59 0.16 -2.57 16 3 C 0.09 1.63 2.70 44.91 0.12 1.75 16 4 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 5 C 0.13 2.91 4.76 86.38 0.41 3.32 16 6 N -0.70 -17.06 5.36 -463.06 -2.48 -19.55 16 7 C 0.49 14.59 7.03 87.66 0.62 15.20 16 8 O -0.58 -22.70 16.52 15.74 0.26 -22.44 16 9 C 0.07 1.61 3.94 30.32 0.12 1.72 16 10 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 11 C -0.14 -3.17 6.53 31.91 0.21 -2.96 16 12 C -0.15 -2.64 7.16 32.10 0.23 -2.41 16 13 C 0.04 0.89 7.78 72.65 0.57 1.45 16 14 O -0.38 -10.69 10.56 -130.19 -1.38 -12.06 16 15 N -0.66 -17.33 5.32 -495.58 -2.63 -19.97 16 16 C 0.06 2.05 5.31 85.56 0.45 2.51 16 17 C 0.44 20.13 7.83 87.66 0.69 20.82 16 18 O -0.61 -31.79 15.90 -3.08 -0.05 -31.84 16 19 N -0.58 -29.22 5.29 -306.98 -1.62 -30.84 16 20 C -0.33 -18.37 9.68 84.04 0.81 -17.56 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 24 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 28 H 0.04 0.82 6.87 -2.39 -0.02 0.81 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.19 6.23 -2.38 -0.01 1.17 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.30 6.61 -2.39 -0.02 1.28 16 35 H 0.42 8.97 8.14 -92.70 -0.75 8.21 16 36 H 0.06 1.57 7.84 -2.39 -0.02 1.55 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 40 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.35 9.47 7.29 -89.69 -0.65 8.82 16 43 H 0.09 2.87 6.22 -2.39 -0.01 2.86 16 44 H 0.06 1.92 6.48 -2.39 -0.02 1.90 16 45 H 0.39 19.37 7.90 -92.71 -0.73 18.63 16 46 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -73.33 374.51 -1.17 -74.50 By element: Atomic # 1 Polarization: 49.43 SS G_CDS: -1.12 Total: 48.31 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 5.55 Total: 19.21 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -6.46 Total: -120.18 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: -1.16 Total: -66.34 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -73.33 -1.17 -74.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494936914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.556 kcal (2) G-P(sol) polarization free energy of solvation -73.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds