Wall clock time and date at job start Tue Mar 31 2020 04:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99740 * 2 1 4 4 C 1.52999 * 109.47068 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47122 * 64.99206 * 4 3 2 6 6 C 1.46768 * 124.34381 * 90.00725 * 5 4 3 7 7 C 1.54487 * 105.46844 * 197.01165 * 6 5 4 8 8 H 1.08996 * 110.96729 * 92.70209 * 7 6 5 9 9 C 1.50702 * 110.96459 * 216.42436 * 7 6 5 10 10 O 1.21274 * 120.00414 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99458 * 180.02562 * 9 7 6 12 12 C 1.46503 * 119.99994 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.46550 * 35.00455 * 12 11 9 14 14 C 1.52992 * 109.47256 * 275.00523 * 12 11 9 15 15 C 1.53001 * 109.47103 * 154.99631 * 12 11 9 16 16 N 1.46493 * 109.47360 * 305.00447 * 15 12 11 17 17 C 1.36941 * 119.99701 * 179.97438 * 16 15 12 18 18 H 1.07993 * 120.00296 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99543 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99438 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00160 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47413 * 90.00125 * 21 19 17 23 23 H 1.48504 * 109.46809 * 210.00051 * 21 19 17 24 24 H 1.48501 * 109.47213 * 329.99897 * 21 19 17 25 25 C 1.54619 * 101.76557 * 334.58255 * 7 6 5 26 26 C 1.34413 * 124.35463 * 269.99922 * 5 4 3 27 27 O 1.21283 * 124.94031 * 359.62849 * 26 5 4 28 28 H 1.08998 * 109.47109 * 60.00908 * 1 2 3 29 29 H 1.09012 * 109.47000 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47480 * 300.00169 * 1 2 3 31 31 H 1.09001 * 109.47286 * 59.99304 * 3 2 1 32 32 H 1.09004 * 109.46336 * 299.99620 * 3 2 1 33 33 H 1.09002 * 109.46785 * 304.99749 * 4 3 2 34 34 H 1.08995 * 109.46902 * 184.99747 * 4 3 2 35 35 H 1.09000 * 110.25007 * 78.01166 * 6 5 4 36 36 H 1.09004 * 110.24485 * 316.00872 * 6 5 4 37 37 H 0.97001 * 119.99938 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.46794 * 299.99655 * 14 12 11 39 39 H 1.08996 * 109.47827 * 59.99508 * 14 12 11 40 40 H 1.09000 * 109.47254 * 180.02562 * 14 12 11 41 41 H 1.09004 * 109.46656 * 65.00469 * 15 12 11 42 42 H 1.08994 * 109.46904 * 185.00278 * 15 12 11 43 43 H 0.96999 * 120.00342 * 0.02562 * 16 15 12 44 44 H 0.96998 * 119.99390 * 180.02562 * 20 19 17 45 45 H 1.09007 * 110.48907 * 143.47513 * 25 7 6 46 46 H 1.09001 * 110.48711 * 265.98708 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5644 -1.2526 6 6 4.3110 1.3086 -2.4723 7 6 4.2867 0.2653 -3.6114 8 1 3.3057 0.2277 -4.0850 9 6 5.3624 0.5511 -4.6275 10 8 6.1005 1.5017 -4.4781 11 7 5.5041 -0.2498 -5.7022 12 6 6.5494 0.0283 -6.6902 13 1 7.4290 0.4281 -6.1857 14 6 6.0338 1.0516 -7.7040 15 6 6.9222 -1.2659 -7.4163 16 7 7.3025 -2.2845 -6.4345 17 6 7.6773 -3.5332 -6.8536 18 1 7.6930 -3.7668 -7.9078 19 6 8.0371 -4.4985 -5.9232 20 7 8.3979 -5.6986 -6.3261 21 14 8.0093 -4.0946 -4.0997 22 1 6.6701 -4.4127 -3.5425 23 1 9.0412 -4.9000 -3.3985 24 1 8.2945 -2.6499 -3.9083 25 6 4.5820 -1.0449 -2.8453 26 6 4.1244 -0.7594 -1.4319 27 8 3.9207 -1.6024 -0.5841 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.8514 0.5683 0.8410 34 1 3.9784 2.1766 0.0889 35 1 5.3045 1.7484 -2.3848 36 1 3.5688 2.0854 -2.6564 37 1 4.9140 -1.0104 -5.8214 38 1 5.1541 0.6517 -8.2084 39 1 5.7682 1.9735 -7.1868 40 1 6.8113 1.2581 -8.4394 41 1 6.0669 -1.6183 -7.9928 42 1 7.7601 -1.0775 -8.0875 43 1 7.2880 -2.0748 -5.4876 44 1 8.6489 -6.3732 -5.6760 45 1 4.0135 -1.8720 -3.2706 46 1 5.6491 -1.2664 -2.8655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497822490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:35 Heat of formation + Delta-G solvation = -98.179822 kcal Electronic energy + Delta-G solvation = -27104.982832 eV Core-core repulsion = 23223.412503 eV Total energy + Delta-G solvation = -3881.570328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92034 -39.41746 -38.01250 -36.68286 -36.00806 -33.85885 -33.55341 -31.51523 -30.46348 -29.29805 -27.81651 -26.57441 -26.03499 -24.19353 -22.90325 -22.17102 -20.84568 -20.19077 -19.53684 -17.97737 -17.38671 -17.21340 -16.81705 -16.19891 -15.85775 -15.65655 -15.42113 -14.95016 -14.72028 -14.54792 -14.08376 -13.91986 -13.76065 -13.27210 -13.21836 -12.98757 -12.82703 -12.68074 -12.43938 -12.31724 -12.28484 -12.09316 -11.92644 -11.67080 -11.44244 -11.43052 -11.13333 -10.89209 -10.55478 -10.19059 -10.07260 -9.94795 -9.64248 -9.63037 -9.00978 -8.93182 -8.83819 -7.30667 -5.81219 -3.18060 2.53485 2.63006 2.74192 3.22339 3.36844 3.38404 3.46746 3.50842 4.09452 4.24258 4.55805 4.59168 4.69902 4.74712 4.78177 4.92893 4.95844 5.02943 5.05640 5.07460 5.10962 5.27416 5.29433 5.41552 5.43324 5.44618 5.51961 5.52931 5.67012 5.73498 5.77145 5.85582 5.97430 6.22598 6.30942 6.34878 6.52647 6.72526 6.87622 7.00283 7.57518 7.93319 8.15933 8.22887 8.37416 9.15574 9.87741 10.06369 11.36825 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003964 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.727880 B = 7062.127374 C = 8472.770621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.621 5.621 6 C 0.120 3.880 7 C -0.123 4.123 8 H 0.116 0.884 9 C 0.525 3.475 10 O -0.541 6.541 11 N -0.710 5.710 12 C 0.129 3.871 13 H 0.088 0.912 14 C -0.157 4.157 15 C 0.149 3.851 16 N -0.755 5.755 17 C -0.249 4.249 18 H 0.091 0.909 19 C 0.009 3.991 20 N -0.931 5.931 21 Si 0.878 3.122 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.278 1.278 25 C -0.149 4.149 26 C 0.527 3.473 27 O -0.513 6.513 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.406 0.594 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.034 0.966 42 H 0.042 0.958 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.113 0.887 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.368 19.103 8.076 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.037 4.037 4 C 0.007 3.993 5 N -0.356 5.356 6 C -0.004 4.004 7 C -0.145 4.145 8 H 0.134 0.866 9 C 0.310 3.690 10 O -0.419 6.419 11 N -0.361 5.361 12 C 0.024 3.976 13 H 0.106 0.894 14 C -0.215 4.215 15 C 0.021 3.979 16 N -0.401 5.401 17 C -0.379 4.379 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.578 5.578 21 Si 0.708 3.292 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.189 4.189 26 C 0.314 3.686 27 O -0.387 6.387 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.241 0.759 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.195 0.805 44 H 0.071 0.929 45 H 0.132 0.868 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.779 18.981 8.538 25.526 hybrid contribution -0.510 0.061 1.144 1.254 sum -15.289 19.041 9.682 26.269 Atomic orbital electron populations 1.22730 0.81395 1.02836 0.99519 1.88090 1.19234 1.26722 1.95252 1.23022 0.94550 0.85746 1.00385 1.21393 0.92036 0.99341 0.86534 1.48173 1.67706 1.07276 1.12475 1.21942 1.02872 0.93574 0.81962 1.22214 1.00222 0.96636 0.95432 0.86571 1.20020 0.84572 0.82623 0.81770 1.90687 1.45347 1.29517 1.76336 1.46058 1.35978 1.30749 1.23323 1.21354 0.90525 0.96542 0.89153 0.89393 1.22080 1.01676 0.98876 0.98902 1.20968 0.98211 0.86514 0.92219 1.42691 1.82810 1.10815 1.03792 1.19025 1.37957 0.86226 0.94673 0.89122 1.24660 1.01078 0.95673 0.97324 1.69695 1.51363 1.03576 1.33212 0.86668 0.78067 0.77508 0.86997 1.20554 1.21573 1.20433 1.22389 1.05190 0.97792 0.93568 1.20616 0.76218 0.82125 0.89643 1.90742 1.50250 1.49101 1.48598 0.94346 0.89630 0.94307 0.92381 0.93134 0.89039 0.88650 0.88949 0.90162 0.75869 0.92366 0.92375 0.91428 0.94839 0.93979 0.80501 0.92946 0.86846 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.38 10.27 -35.23 -0.36 -4.74 16 3 C 0.04 0.34 6.28 37.16 0.23 0.57 16 4 C 0.13 1.17 6.33 -4.04 -0.03 1.14 16 5 N -0.62 -7.03 2.90 -172.41 -0.50 -7.53 16 6 C 0.12 1.17 6.71 -3.12 -0.02 1.15 16 7 C -0.12 -1.28 3.54 -90.14 -0.32 -1.60 16 8 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 9 C 0.53 6.89 7.02 -10.98 -0.08 6.82 16 10 O -0.54 -8.61 15.17 5.56 0.08 -8.52 16 11 N -0.71 -9.39 4.52 -53.81 -0.24 -9.64 16 12 C 0.13 1.86 2.73 -67.93 -0.19 1.67 16 13 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 14 C -0.16 -1.82 9.48 37.15 0.35 -1.47 16 15 C 0.15 2.60 5.82 -4.04 -0.02 2.58 16 16 N -0.75 -16.95 5.24 -59.91 -0.31 -17.26 16 17 C -0.25 -6.84 10.47 -15.05 -0.16 -6.99 16 18 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 21 Si 0.88 22.14 27.74 -169.99 -4.71 17.42 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 25 C -0.15 -1.92 6.41 -26.75 -0.17 -2.09 16 26 C 0.53 7.75 7.72 -10.86 -0.08 7.66 16 27 O -0.51 -9.62 17.49 5.56 0.10 -9.52 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 1.02 6.96 -51.93 -0.36 0.66 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.41 4.97 8.60 -40.82 -0.35 4.62 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.36 8.10 5.20 -40.82 -0.21 7.89 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.11 1.58 7.89 -51.93 -0.41 1.18 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -36.31 381.56 -6.54 -42.84 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.65 Total: 8.45 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 0.54 Total: 10.97 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.28 Total: -62.66 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.18 Total: -22.79 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.31 -6.54 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497822490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.336 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds