Wall clock time and date at job start Tue Mar 31 2020 04:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99740 * 2 1 4 4 C 1.52999 * 109.47068 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47122 * 64.99206 * 4 3 2 6 6 C 1.46768 * 124.34381 * 90.00725 * 5 4 3 7 7 C 1.54487 * 105.46844 * 197.01165 * 6 5 4 8 8 H 1.08996 * 110.96729 * 92.70209 * 7 6 5 9 9 C 1.50702 * 110.96459 * 216.42436 * 7 6 5 10 10 O 1.21274 * 120.00414 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99458 * 180.02562 * 9 7 6 12 12 C 1.46503 * 119.99994 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.46550 * 35.00455 * 12 11 9 14 14 C 1.52992 * 109.47256 * 275.00523 * 12 11 9 15 15 C 1.53001 * 109.47103 * 154.99631 * 12 11 9 16 16 N 1.46493 * 109.47360 * 305.00447 * 15 12 11 17 17 C 1.36941 * 119.99701 * 179.97438 * 16 15 12 18 18 H 1.07993 * 120.00296 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99543 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99438 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00160 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47413 * 90.00125 * 21 19 17 23 23 H 1.48504 * 109.46809 * 210.00051 * 21 19 17 24 24 H 1.48501 * 109.47213 * 329.99897 * 21 19 17 25 25 C 1.54619 * 101.76557 * 334.58255 * 7 6 5 26 26 C 1.34413 * 124.35463 * 269.99922 * 5 4 3 27 27 O 1.21283 * 124.94031 * 359.62849 * 26 5 4 28 28 H 1.08998 * 109.47109 * 60.00908 * 1 2 3 29 29 H 1.09012 * 109.47000 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47480 * 300.00169 * 1 2 3 31 31 H 1.09001 * 109.47286 * 59.99304 * 3 2 1 32 32 H 1.09004 * 109.46336 * 299.99620 * 3 2 1 33 33 H 1.09002 * 109.46785 * 304.99749 * 4 3 2 34 34 H 1.08995 * 109.46902 * 184.99747 * 4 3 2 35 35 H 1.09000 * 110.25007 * 78.01166 * 6 5 4 36 36 H 1.09004 * 110.24485 * 316.00872 * 6 5 4 37 37 H 0.97001 * 119.99938 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.46794 * 299.99655 * 14 12 11 39 39 H 1.08996 * 109.47827 * 59.99508 * 14 12 11 40 40 H 1.09000 * 109.47254 * 180.02562 * 14 12 11 41 41 H 1.09004 * 109.46656 * 65.00469 * 15 12 11 42 42 H 1.08994 * 109.46904 * 185.00278 * 15 12 11 43 43 H 0.96999 * 120.00342 * 0.02562 * 16 15 12 44 44 H 0.96998 * 119.99390 * 180.02562 * 20 19 17 45 45 H 1.09007 * 110.48907 * 143.47513 * 25 7 6 46 46 H 1.09001 * 110.48711 * 265.98708 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5644 -1.2526 6 6 4.3110 1.3086 -2.4723 7 6 4.2867 0.2653 -3.6114 8 1 3.3057 0.2277 -4.0850 9 6 5.3624 0.5511 -4.6275 10 8 6.1005 1.5017 -4.4781 11 7 5.5041 -0.2498 -5.7022 12 6 6.5494 0.0283 -6.6902 13 1 7.4290 0.4281 -6.1857 14 6 6.0338 1.0516 -7.7040 15 6 6.9222 -1.2659 -7.4163 16 7 7.3025 -2.2845 -6.4345 17 6 7.6773 -3.5332 -6.8536 18 1 7.6930 -3.7668 -7.9078 19 6 8.0371 -4.4985 -5.9232 20 7 8.3979 -5.6986 -6.3261 21 14 8.0093 -4.0946 -4.0997 22 1 6.6701 -4.4127 -3.5425 23 1 9.0412 -4.9000 -3.3985 24 1 8.2945 -2.6499 -3.9083 25 6 4.5820 -1.0449 -2.8453 26 6 4.1244 -0.7594 -1.4319 27 8 3.9207 -1.6024 -0.5841 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.8514 0.5683 0.8410 34 1 3.9784 2.1766 0.0889 35 1 5.3045 1.7484 -2.3848 36 1 3.5688 2.0854 -2.6564 37 1 4.9140 -1.0104 -5.8214 38 1 5.1541 0.6517 -8.2084 39 1 5.7682 1.9735 -7.1868 40 1 6.8113 1.2581 -8.4394 41 1 6.0669 -1.6183 -7.9928 42 1 7.7601 -1.0775 -8.0875 43 1 7.2880 -2.0748 -5.4876 44 1 8.6489 -6.3732 -5.6760 45 1 4.0135 -1.8720 -3.2706 46 1 5.6491 -1.2664 -2.8655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497822490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:34 Heat of formation + Delta-G solvation = -126.437681 kcal Electronic energy + Delta-G solvation = -27106.208184 eV Core-core repulsion = 23223.412503 eV Total energy + Delta-G solvation = -3882.795681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90981 -40.49350 -38.74867 -37.97607 -37.17562 -35.51479 -34.48144 -33.26006 -31.79627 -30.11410 -28.76622 -27.61299 -27.21210 -25.12414 -24.04777 -23.63706 -22.09241 -21.23357 -20.49622 -19.78131 -18.56057 -18.11971 -17.54518 -17.31977 -16.78479 -16.61719 -16.57383 -16.26586 -15.88419 -15.73222 -15.54870 -15.01653 -14.81713 -14.69378 -14.27936 -14.22862 -14.01998 -13.77276 -13.64501 -13.58963 -13.21881 -13.03425 -12.89585 -12.73815 -12.58689 -12.53378 -12.35873 -12.21425 -12.08179 -11.89265 -11.73388 -11.16974 -11.01672 -10.75008 -10.59746 -10.08190 -9.74575 -9.31498 -8.04786 -5.36970 1.34474 1.35165 1.42449 1.48508 1.56503 1.86479 2.22250 2.43888 2.90771 3.17360 3.28078 3.33522 3.55751 3.74924 3.86639 3.95156 4.06491 4.13711 4.16362 4.31249 4.36448 4.41791 4.47245 4.48235 4.51763 4.55338 4.59986 4.72150 4.82739 4.84094 4.85213 4.88588 4.94248 4.97666 5.14513 5.35945 5.52948 5.56196 5.76451 6.02554 6.19487 6.29655 6.53846 7.06538 7.11560 7.19907 7.82623 7.99571 9.16665 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.003964 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.727880 B = 7062.127374 C = 8472.770621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.040 3.960 4 C 0.121 3.879 5 N -0.612 5.612 6 C 0.121 3.879 7 C -0.109 4.109 8 H 0.151 0.849 9 C 0.528 3.472 10 O -0.568 6.568 11 N -0.710 5.710 12 C 0.138 3.862 13 H 0.068 0.932 14 C -0.146 4.146 15 C 0.146 3.854 16 N -0.757 5.757 17 C -0.227 4.227 18 H 0.065 0.935 19 C -0.055 4.055 20 N -0.980 5.980 21 Si 0.939 3.061 22 H -0.273 1.273 23 H -0.301 1.301 24 H -0.262 1.262 25 C -0.150 4.150 26 C 0.517 3.483 27 O -0.565 6.565 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.364 0.636 44 H 0.257 0.743 45 H 0.119 0.881 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.186 22.182 8.162 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.037 4.037 4 C 0.000 4.000 5 N -0.345 5.345 6 C -0.001 4.001 7 C -0.130 4.130 8 H 0.169 0.831 9 C 0.314 3.686 10 O -0.448 6.448 11 N -0.361 5.361 12 C 0.033 3.967 13 H 0.086 0.914 14 C -0.205 4.205 15 C 0.019 3.981 16 N -0.403 5.403 17 C -0.358 4.358 18 H 0.083 0.917 19 C -0.247 4.247 20 N -0.631 5.631 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.228 1.228 24 H -0.187 1.187 25 C -0.191 4.191 26 C 0.305 3.695 27 O -0.444 6.444 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.197 0.803 44 H 0.066 0.934 45 H 0.137 0.863 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.631 22.158 8.599 29.009 hybrid contribution 0.066 -0.815 1.020 1.307 sum -16.565 21.343 9.619 28.678 Atomic orbital electron populations 1.22830 0.80051 1.02953 1.00892 1.88048 1.20961 1.28868 1.95572 1.23145 0.93440 0.84881 1.02258 1.21686 0.93254 1.00364 0.84734 1.48284 1.66120 1.06374 1.13719 1.22070 1.03528 0.93746 0.80772 1.22215 1.00777 0.95222 0.94796 0.83121 1.20361 0.84582 0.81959 0.81722 1.90684 1.46423 1.30767 1.76899 1.46054 1.35641 1.31064 1.23335 1.21157 0.90581 0.95278 0.89687 0.91354 1.21992 1.02472 0.97807 0.98220 1.21163 0.98493 0.86735 0.91661 1.42707 1.82574 1.10150 1.04855 1.19043 1.35437 0.87879 0.93429 0.91694 1.25331 1.02224 0.95712 1.01446 1.69851 1.53967 1.04867 1.34417 0.85670 0.77847 0.77836 0.81935 1.19846 1.22816 1.18706 1.22357 1.03976 0.99471 0.93293 1.20923 0.75904 0.82927 0.89756 1.90706 1.52846 1.50713 1.50124 0.93025 0.90297 0.92777 0.90136 0.91435 0.91310 0.85073 0.89976 0.86579 0.75137 0.90848 0.92222 0.90500 0.93494 0.93986 0.80310 0.93409 0.86292 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.67 16 2 O -0.41 -9.17 10.27 -148.98 -1.53 -10.70 16 3 C 0.04 0.56 6.28 71.98 0.45 1.01 16 4 C 0.12 1.93 6.33 86.38 0.55 2.48 16 5 N -0.61 -12.62 2.90 -817.98 -2.37 -14.99 16 6 C 0.12 1.97 6.71 86.83 0.58 2.55 16 7 C -0.11 -1.94 3.54 -10.48 -0.04 -1.97 16 8 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 9 C 0.53 12.46 7.02 87.66 0.62 13.07 16 10 O -0.57 -16.78 15.17 -3.01 -0.05 -16.82 16 11 N -0.71 -16.96 4.52 -442.54 -2.00 -18.96 16 12 C 0.14 3.67 2.73 44.99 0.12 3.80 16 13 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 14 C -0.15 -2.94 9.48 71.98 0.68 -2.26 16 15 C 0.15 4.83 5.82 86.38 0.50 5.33 16 16 N -0.76 -33.08 5.24 -343.46 -1.80 -34.88 16 17 C -0.23 -12.45 10.47 84.03 0.88 -11.57 16 18 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 19 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 20 N -0.98 -62.46 13.97 21.65 0.30 -62.15 16 21 Si 0.94 46.23 27.74 68.60 1.90 48.14 16 22 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 24 H -0.26 -11.99 6.52 99.48 0.65 -11.34 16 25 C -0.15 -3.68 6.41 30.58 0.20 -3.48 16 26 C 0.52 14.87 7.72 87.90 0.68 15.55 16 27 O -0.57 -21.63 17.49 -3.04 -0.05 -21.68 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 1.43 7.92 -2.39 -0.02 1.42 16 34 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.58 6.96 -2.39 -0.02 1.57 16 36 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.41 8.95 8.60 -92.71 -0.80 8.15 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.36 15.70 5.20 -92.71 -0.48 15.22 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 46 H 0.09 2.55 7.89 -2.39 -0.02 2.53 16 Total: -1.00 -81.03 381.56 0.99 -80.04 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -0.36 Total: 28.57 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 6.94 Total: 23.43 kcal Atomic # 7 Polarization: -125.11 SS G_CDS: -5.87 Total: -130.98 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -1.63 Total: -49.20 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.14 kcal Total: -81.03 0.99 -80.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497822490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.399 kcal (2) G-P(sol) polarization free energy of solvation -81.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds