Wall clock time and date at job start Tue Mar 31 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46979 * 2 1 4 4 C 1.42904 * 113.99969 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46984 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46793 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00320 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99514 * 180.02562 * 6 5 4 9 9 C 1.47015 * 125.65201 * 359.97438 * 8 6 5 10 10 C 1.54323 * 107.27258 * 178.95966 * 9 8 6 11 11 C 1.55156 * 102.94352 * 337.80946 * 10 9 8 12 12 H 1.09001 * 111.00472 * 277.39334 * 11 10 9 13 13 N 1.46898 * 111.00581 * 153.57234 * 11 10 9 14 14 C 1.46906 * 110.99888 * 86.45532 * 13 11 10 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 11 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00466 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00498 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99920 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47208 * 89.99447 * 22 20 18 24 24 H 1.48495 * 109.46914 * 210.00201 * 22 20 18 25 25 H 1.48508 * 109.46806 * 329.99819 * 22 20 18 26 26 C 1.47428 * 125.64361 * 180.02562 * 8 6 5 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47283 * 299.99872 * 1 2 3 29 29 H 1.08996 * 109.46807 * 60.00527 * 1 2 3 30 30 H 1.08997 * 109.47244 * 239.99431 * 2 1 3 31 31 H 1.09005 * 109.46924 * 119.99614 * 2 1 3 32 32 H 1.08997 * 109.47359 * 59.99856 * 4 3 2 33 33 H 1.09001 * 109.46606 * 299.99222 * 4 3 2 34 34 H 1.09005 * 109.47072 * 60.00208 * 5 4 3 35 35 H 1.08997 * 109.47578 * 300.00014 * 5 4 3 36 36 H 1.09004 * 109.88250 * 59.54256 * 9 8 6 37 37 H 1.08997 * 109.88389 * 298.38062 * 9 8 6 38 38 H 1.09002 * 110.72309 * 219.44700 * 10 9 8 39 39 H 1.08999 * 110.86955 * 96.24470 * 10 9 8 40 40 H 1.00904 * 110.99913 * 210.40598 * 13 11 10 41 41 H 1.09004 * 109.47040 * 299.99934 * 14 13 11 42 42 H 1.09000 * 109.47033 * 59.99886 * 14 13 11 43 43 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 44 44 H 0.97002 * 120.00283 * 180.02562 * 21 20 18 45 45 H 1.09008 * 110.36336 * 85.27104 * 26 8 6 46 46 H 1.08997 * 110.37078 * 322.94987 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 6 5.3276 3.0574 -0.0012 7 8 6.0151 2.0583 -0.0012 8 7 5.9072 4.2742 -0.0011 9 6 5.1971 5.5615 -0.0016 10 6 6.2659 6.6744 0.0254 11 6 7.5070 5.9502 0.6106 12 1 7.4605 5.9128 1.6990 13 7 8.7506 6.5899 0.1612 14 6 9.1197 7.7029 1.0461 15 6 10.3976 8.3327 0.5549 16 8 10.9466 7.8976 -0.4353 17 7 10.9304 9.3795 1.2159 18 6 12.0927 9.9528 0.7687 19 1 12.5816 9.5654 -0.1129 20 6 12.6418 11.0323 1.4498 21 7 13.7561 11.5815 1.0215 22 14 11.7959 11.7029 2.9744 23 1 12.3123 11.0003 4.1764 24 1 12.0717 13.1571 3.0942 25 1 10.3312 11.4843 2.8643 26 6 7.3583 4.5347 -0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8333 0.9767 -0.8908 33 1 3.8339 0.9766 0.8893 34 1 3.4229 3.4222 0.8889 35 1 3.4222 3.4217 -0.8911 36 1 4.5627 5.6353 0.8817 37 1 4.5918 5.6507 -0.9037 38 1 5.9548 7.4924 0.6752 39 1 6.4715 7.0399 -0.9807 40 1 9.4997 5.9172 0.0945 41 1 8.3235 8.4474 1.0451 42 1 9.2657 7.3284 2.0593 43 1 10.4912 9.7277 2.0075 44 1 14.1396 12.3349 1.4972 45 1 7.7461 4.5190 -1.0202 46 1 7.8760 3.7989 0.6137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567092047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:04 Heat of formation + Delta-G solvation = -112.144307 kcal Electronic energy + Delta-G solvation = -25171.357874 eV Core-core repulsion = 21289.182000 eV Total energy + Delta-G solvation = -3882.175874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44031 -38.77385 -38.35501 -37.69805 -34.89968 -33.88977 -32.93788 -31.70573 -31.13014 -30.40261 -29.07016 -26.41923 -24.55691 -23.61845 -23.20852 -22.91178 -20.73989 -19.53034 -19.32731 -18.37439 -17.82014 -17.07571 -16.63325 -16.50671 -16.07045 -15.57801 -15.40787 -15.03151 -14.80525 -14.65657 -14.26992 -13.88785 -13.80350 -13.46841 -13.19539 -13.06016 -12.90866 -12.72835 -12.60299 -12.37548 -12.20663 -12.16186 -11.89449 -11.68380 -11.52757 -11.44443 -11.30763 -11.19190 -10.95898 -10.62165 -10.19325 -10.01190 -10.00009 -9.60270 -8.95709 -8.65437 -8.30537 -8.20380 -6.33465 -3.85206 2.30681 2.45917 3.00026 3.04340 3.13044 3.31993 3.70111 3.97536 4.07971 4.12513 4.40717 4.43963 4.57059 4.62137 4.64119 4.75004 4.84447 4.87220 4.95231 4.98779 5.06410 5.14839 5.21601 5.22585 5.31452 5.37465 5.39978 5.48197 5.50109 5.56662 5.67219 5.69848 5.72783 5.74142 5.86008 5.91266 6.03144 6.75645 6.97528 7.17607 7.43399 7.55116 7.81670 8.11632 8.56673 8.92281 9.39477 9.79067 10.79569 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.043188 B = 0.001797 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.165555 B =15578.975727 C =15909.884437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.134 4.134 6 C 0.533 3.467 7 O -0.543 6.543 8 N -0.616 5.616 9 C 0.100 3.900 10 C -0.124 4.124 11 C 0.072 3.928 12 H 0.059 0.941 13 N -0.656 5.656 14 C 0.049 3.951 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.589 5.589 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.880 5.880 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.107 3.893 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.355 0.645 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.370 0.630 44 H 0.274 0.726 45 H 0.083 0.917 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.364 -16.575 2.458 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.001 3.999 5 C -0.174 4.174 6 C 0.322 3.678 7 O -0.420 6.420 8 N -0.350 5.350 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.039 4.039 12 H 0.077 0.923 13 N -0.289 5.289 14 C -0.084 4.084 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.229 5.229 18 C -0.435 4.435 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.520 5.520 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.016 4.016 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.176 0.824 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.907 -16.754 1.345 30.882 hybrid contribution -0.062 0.198 2.063 2.073 sum -25.969 -16.557 3.408 30.986 Atomic orbital electron populations 1.21752 0.93632 1.02326 1.03159 1.22459 0.95534 0.83468 1.00344 1.87801 1.21057 1.26885 1.95598 1.22107 0.80733 0.95256 1.01820 1.21431 0.92025 0.98215 1.05711 1.20047 0.89994 0.81688 0.76069 1.90732 1.65409 1.35582 1.50293 1.48365 1.07825 1.05613 1.73228 1.22148 0.95735 0.82503 1.01955 1.22732 0.93208 0.96586 1.03733 1.22678 0.91612 0.92326 0.97297 0.92291 1.60065 1.05369 1.12583 1.50917 1.21748 0.97747 0.94712 0.94158 1.19662 0.86987 0.83471 0.86423 1.90575 1.63165 1.63946 1.26883 1.42197 1.24210 1.29777 1.26708 1.19437 0.98556 1.12372 1.13134 0.86251 1.25038 0.96164 0.96659 0.98227 1.69619 1.18788 1.23618 1.39995 0.86672 0.79500 0.79737 0.83466 1.19666 1.20145 1.19480 1.22318 0.80965 0.95894 1.02413 0.91036 0.91830 0.91805 0.93240 0.93269 0.92344 0.92389 0.88016 0.87938 0.91164 0.90885 0.90029 0.88920 0.82411 0.89343 0.93559 0.79690 0.91581 0.89889 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.39 -3.49 10.34 -35.23 -0.36 -3.86 16 4 C 0.08 0.68 5.23 37.16 0.19 0.87 16 5 C -0.13 -1.05 5.26 -27.88 -0.15 -1.19 16 6 C 0.53 5.82 7.85 -10.98 -0.09 5.73 16 7 O -0.54 -7.93 16.24 5.56 0.09 -7.84 16 8 N -0.62 -6.12 3.33 -170.50 -0.57 -6.69 16 9 C 0.10 0.73 6.49 -3.07 -0.02 0.71 16 10 C -0.12 -1.09 6.60 -24.90 -0.16 -1.25 16 11 C 0.07 0.77 3.32 -65.55 -0.22 0.55 16 12 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 13 N -0.66 -9.32 6.00 -105.71 -0.63 -9.95 16 14 C 0.05 0.76 6.04 -4.97 -0.03 0.73 16 15 C 0.45 9.86 7.82 -10.99 -0.09 9.77 16 16 O -0.56 -14.82 15.78 5.55 0.09 -14.73 16 17 N -0.59 -13.71 5.09 -10.97 -0.06 -13.76 16 18 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 22 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 26 C 0.11 1.18 6.37 -2.51 -0.02 1.16 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.11 16 33 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.36 5.32 8.23 -39.29 -0.32 5.00 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 46 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -34.46 382.56 -7.51 -41.97 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.70 Total: 9.87 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.19 Total: 9.64 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.48 Total: -55.13 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.19 Total: -26.43 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.46 -7.51 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567092047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.179 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds