Wall clock time and date at job start Tue Mar 31 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46979 * 2 1 4 4 C 1.42904 * 113.99969 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46984 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46793 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00320 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99514 * 180.02562 * 6 5 4 9 9 C 1.47015 * 125.65201 * 359.97438 * 8 6 5 10 10 C 1.54323 * 107.27258 * 178.95966 * 9 8 6 11 11 C 1.55156 * 102.94352 * 337.80946 * 10 9 8 12 12 H 1.09001 * 111.00472 * 277.39334 * 11 10 9 13 13 N 1.46898 * 111.00581 * 153.57234 * 11 10 9 14 14 C 1.46906 * 110.99888 * 86.45532 * 13 11 10 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 11 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00466 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00498 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99920 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47208 * 89.99447 * 22 20 18 24 24 H 1.48495 * 109.46914 * 210.00201 * 22 20 18 25 25 H 1.48508 * 109.46806 * 329.99819 * 22 20 18 26 26 C 1.47428 * 125.64361 * 180.02562 * 8 6 5 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47283 * 299.99872 * 1 2 3 29 29 H 1.08996 * 109.46807 * 60.00527 * 1 2 3 30 30 H 1.08997 * 109.47244 * 239.99431 * 2 1 3 31 31 H 1.09005 * 109.46924 * 119.99614 * 2 1 3 32 32 H 1.08997 * 109.47359 * 59.99856 * 4 3 2 33 33 H 1.09001 * 109.46606 * 299.99222 * 4 3 2 34 34 H 1.09005 * 109.47072 * 60.00208 * 5 4 3 35 35 H 1.08997 * 109.47578 * 300.00014 * 5 4 3 36 36 H 1.09004 * 109.88250 * 59.54256 * 9 8 6 37 37 H 1.08997 * 109.88389 * 298.38062 * 9 8 6 38 38 H 1.09002 * 110.72309 * 219.44700 * 10 9 8 39 39 H 1.08999 * 110.86955 * 96.24470 * 10 9 8 40 40 H 1.00904 * 110.99913 * 210.40598 * 13 11 10 41 41 H 1.09004 * 109.47040 * 299.99934 * 14 13 11 42 42 H 1.09000 * 109.47033 * 59.99886 * 14 13 11 43 43 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 44 44 H 0.97002 * 120.00283 * 180.02562 * 21 20 18 45 45 H 1.09008 * 110.36336 * 85.27104 * 26 8 6 46 46 H 1.08997 * 110.37078 * 322.94987 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 6 5.3276 3.0574 -0.0012 7 8 6.0151 2.0583 -0.0012 8 7 5.9072 4.2742 -0.0011 9 6 5.1971 5.5615 -0.0016 10 6 6.2659 6.6744 0.0254 11 6 7.5070 5.9502 0.6106 12 1 7.4605 5.9128 1.6990 13 7 8.7506 6.5899 0.1612 14 6 9.1197 7.7029 1.0461 15 6 10.3976 8.3327 0.5549 16 8 10.9466 7.8976 -0.4353 17 7 10.9304 9.3795 1.2159 18 6 12.0927 9.9528 0.7687 19 1 12.5816 9.5654 -0.1129 20 6 12.6418 11.0323 1.4498 21 7 13.7561 11.5815 1.0215 22 14 11.7959 11.7029 2.9744 23 1 12.3123 11.0003 4.1764 24 1 12.0717 13.1571 3.0942 25 1 10.3312 11.4843 2.8643 26 6 7.3583 4.5347 -0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8333 0.9767 -0.8908 33 1 3.8339 0.9766 0.8893 34 1 3.4229 3.4222 0.8889 35 1 3.4222 3.4217 -0.8911 36 1 4.5627 5.6353 0.8817 37 1 4.5918 5.6507 -0.9037 38 1 5.9548 7.4924 0.6752 39 1 6.4715 7.0399 -0.9807 40 1 9.4997 5.9172 0.0945 41 1 8.3235 8.4474 1.0451 42 1 9.2657 7.3284 2.0593 43 1 10.4912 9.7277 2.0075 44 1 14.1396 12.3349 1.4972 45 1 7.7461 4.5190 -1.0202 46 1 7.8760 3.7989 0.6137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567092047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:03 Heat of formation + Delta-G solvation = -140.064117 kcal Electronic energy + Delta-G solvation = -25172.568568 eV Core-core repulsion = 21289.182000 eV Total energy + Delta-G solvation = -3883.386568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26163 -40.30127 -39.21196 -38.60106 -36.24073 -35.60370 -33.74857 -33.55625 -31.91183 -31.03782 -29.99408 -27.88445 -25.74416 -24.85107 -23.69006 -23.61573 -21.57738 -21.29263 -20.36158 -20.06417 -18.54609 -17.95760 -17.60397 -17.26256 -17.18824 -16.98660 -16.47001 -16.31688 -15.81798 -15.59760 -15.28592 -14.95911 -14.79346 -14.59597 -14.52487 -14.32847 -13.87276 -13.79079 -13.74599 -13.20681 -13.18366 -13.00638 -12.87327 -12.74552 -12.48131 -12.40559 -12.13948 -12.04721 -12.01489 -11.96219 -11.71380 -11.50290 -11.07754 -10.62181 -10.43754 -10.24234 -9.74432 -9.41729 -8.40284 -6.01633 1.31507 1.37172 1.46319 1.49785 1.70655 1.96959 2.24473 2.65395 2.79452 3.16396 3.33843 3.42864 3.69248 3.73043 3.98116 4.04538 4.10961 4.15642 4.16885 4.31932 4.35475 4.37441 4.43712 4.45472 4.49462 4.56766 4.66029 4.73766 4.75742 4.81441 4.88244 4.91188 5.04039 5.06758 5.17641 5.28194 5.29488 5.53817 5.90251 6.03133 6.16307 6.28161 6.42223 6.60481 6.89112 7.01004 7.40725 7.97673 8.77389 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.043188 B = 0.001797 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.165555 B =15578.975727 C =15909.884437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.403 6.403 4 C 0.079 3.921 5 C -0.123 4.123 6 C 0.529 3.471 7 O -0.590 6.590 8 N -0.615 5.615 9 C 0.100 3.900 10 C -0.120 4.120 11 C 0.078 3.922 12 H 0.077 0.923 13 N -0.674 5.674 14 C 0.065 3.935 15 C 0.447 3.553 16 O -0.616 6.616 17 N -0.590 5.590 18 C -0.331 4.331 19 H 0.054 0.946 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.227 1.227 26 C 0.107 3.893 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.346 0.654 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.391 0.609 44 H 0.279 0.721 45 H 0.066 0.934 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.422 -15.896 5.128 34.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.323 6.323 4 C 0.002 3.998 5 C -0.162 4.162 6 C 0.319 3.681 7 O -0.471 6.471 8 N -0.348 5.348 9 C -0.022 4.022 10 C -0.159 4.159 11 C -0.033 4.033 12 H 0.094 0.906 13 N -0.307 5.307 14 C -0.067 4.067 15 C 0.235 3.765 16 O -0.500 6.500 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.183 1.183 24 H -0.202 1.202 25 H -0.150 1.150 26 C -0.017 4.017 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.165 0.835 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -30.023 -16.067 4.018 34.288 hybrid contribution 1.256 -0.116 1.090 1.667 sum -28.767 -16.183 5.107 33.399 Atomic orbital electron populations 1.21761 0.92398 1.03429 1.02949 1.22673 0.96580 0.82719 1.00764 1.87779 1.20794 1.28151 1.95621 1.22040 0.80845 0.95970 1.00938 1.21391 0.89476 0.97817 1.07536 1.20615 0.91139 0.81221 0.75116 1.90712 1.66631 1.37198 1.52532 1.48453 1.07445 1.06511 1.72392 1.22362 0.95380 0.80281 1.04208 1.22743 0.92453 0.97517 1.03167 1.22705 0.90587 0.91793 0.98178 0.90561 1.60078 1.06346 1.12674 1.51586 1.21668 0.94351 0.95422 0.95284 1.21010 0.88271 0.82136 0.85043 1.90557 1.65123 1.65109 1.29242 1.42010 1.23135 1.30342 1.27668 1.19011 1.00854 1.13876 1.12253 0.92816 1.26136 0.96634 0.96145 1.02439 1.69809 1.21015 1.24443 1.42327 0.85355 0.80373 0.78371 0.77344 1.18271 1.20158 1.15035 1.22183 0.81969 0.96220 1.01305 0.89332 0.91957 0.92030 0.92929 0.92819 0.93459 0.93231 0.85813 0.86153 0.88321 0.89203 0.87754 0.90509 0.83490 0.86189 0.90271 0.77368 0.91168 0.91588 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 71.98 0.74 -0.56 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.40 -6.58 10.34 -148.98 -1.54 -8.12 16 4 C 0.08 1.31 5.23 71.98 0.38 1.69 16 5 C -0.12 -1.63 5.26 29.85 0.16 -1.48 16 6 C 0.53 10.88 7.85 87.66 0.69 11.56 16 7 O -0.59 -17.43 16.24 -3.01 -0.05 -17.48 16 8 N -0.61 -11.00 3.33 -811.74 -2.70 -13.70 16 9 C 0.10 1.06 6.49 86.73 0.56 1.62 16 10 C -0.12 -1.67 6.60 31.78 0.21 -1.46 16 11 C 0.08 1.45 3.32 46.32 0.15 1.60 16 12 H 0.08 1.22 7.92 -2.39 -0.02 1.20 16 13 N -0.67 -18.12 6.00 -488.35 -2.93 -21.05 16 14 C 0.06 1.79 6.04 85.56 0.52 2.31 16 15 C 0.45 19.47 7.82 87.66 0.69 20.16 16 16 O -0.62 -33.63 15.78 -3.06 -0.05 -33.68 16 17 N -0.59 -27.00 5.09 -306.99 -1.56 -28.56 16 18 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 19 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 20 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 21 N -0.94 -56.11 13.96 21.66 0.30 -55.81 16 22 Si 0.97 37.82 27.74 68.60 1.90 39.72 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.23 -7.31 6.52 99.48 0.65 -6.66 16 26 C 0.11 2.27 6.37 86.86 0.55 2.83 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 33 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 34 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.35 10.38 8.23 -89.69 -0.74 9.64 16 41 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.08 1.74 8.09 -2.39 -0.02 1.73 16 43 H 0.39 14.52 5.76 -92.71 -0.53 13.99 16 44 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 Total: -1.00 -82.30 382.56 -0.53 -82.83 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.35 Total: 35.17 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 6.44 Total: 20.67 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.89 Total: -119.12 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -1.64 Total: -59.28 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.90 Total: 39.72 kcal Total: -82.30 -0.53 -82.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567092047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.229 kcal (2) G-P(sol) polarization free energy of solvation -82.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds