Wall clock time and date at job start Tue Mar 31 2020 04:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.09005 * 109.46973 * 55.00124 * 3 2 1 5 5 O 1.42900 * 109.47518 * 294.99902 * 3 2 1 6 6 C 1.42901 * 114.00236 * 149.99830 * 5 3 2 7 7 C 1.50700 * 109.46932 * 174.99736 * 3 2 1 8 8 O 1.21283 * 119.99609 * 115.00596 * 7 3 2 9 9 N 1.34775 * 120.00140 * 295.00015 * 7 3 2 10 10 C 1.46503 * 120.00000 * 179.97438 * 9 7 3 11 11 C 1.53005 * 109.46948 * 175.57450 * 10 9 7 12 12 N 1.46895 * 115.54923 * 279.61218 * 11 10 9 13 13 C 1.46893 * 111.00492 * 294.62910 * 12 11 10 14 14 C 1.50696 * 109.47424 * 179.58952 * 13 12 11 15 15 O 1.21288 * 120.00138 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00251 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00459 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99988 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00268 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46772 * 90.00000 * 21 19 17 23 23 H 1.48502 * 109.47333 * 210.00225 * 21 19 17 24 24 H 1.48497 * 109.47114 * 330.00528 * 21 19 17 25 25 C 1.52993 * 117.49542 * 133.94643 * 11 10 9 26 26 C 1.52996 * 117.49657 * 65.28777 * 11 10 9 27 27 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47732 * 299.99918 * 1 2 3 29 29 H 1.09008 * 109.46934 * 59.99997 * 1 2 3 30 30 H 1.08999 * 109.47450 * 240.00422 * 2 1 3 31 31 H 1.08996 * 109.47244 * 119.99758 * 2 1 3 32 32 H 1.08998 * 109.47358 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.47311 * 300.00703 * 6 5 3 34 34 H 1.09001 * 109.46660 * 59.99781 * 6 5 3 35 35 H 0.97005 * 120.00092 * 0.27810 * 9 7 3 36 36 H 1.09005 * 109.46974 * 295.57393 * 10 9 7 37 37 H 1.08993 * 109.46942 * 55.57711 * 10 9 7 38 38 H 1.00903 * 110.99820 * 170.67214 * 12 11 10 39 39 H 1.09003 * 109.46999 * 299.59512 * 13 12 11 40 40 H 1.09007 * 109.46928 * 59.59046 * 13 12 11 41 41 H 0.97007 * 119.99967 * 0.02562 * 16 14 13 42 42 H 0.97006 * 120.00218 * 180.02562 * 20 19 17 43 43 H 1.09003 * 117.50382 * 359.97438 * 25 11 10 44 44 H 1.09000 * 117.49932 * 145.01957 * 25 11 10 45 45 H 1.09008 * 117.49543 * 214.97577 * 26 11 10 46 46 H 1.08998 * 117.50454 * 359.97052 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8419 5 8 1.6619 2.0815 -1.2210 6 6 1.4558 3.4904 -1.1002 7 6 3.5418 1.4444 0.1239 8 8 4.2249 1.8613 -0.7875 9 7 4.1259 0.9829 1.2474 10 6 5.5860 0.9842 1.3676 11 6 5.9827 0.5174 2.7697 12 7 5.8975 1.5364 3.8244 13 6 6.8677 2.6149 3.5940 14 6 6.7441 3.6440 4.6880 15 8 5.9283 3.4935 5.5728 16 7 7.5407 4.7311 4.6838 17 6 7.4286 5.6670 5.6792 18 1 6.7016 5.5335 6.4667 19 6 8.2496 6.7881 5.6746 20 7 9.1331 6.9514 4.7156 21 14 8.0963 8.0637 7.0306 22 1 9.0063 7.7087 8.1492 23 1 8.4650 9.3998 6.4974 24 1 6.6958 8.0966 7.5232 25 6 7.1018 -0.5201 2.8785 26 6 5.6518 -0.9262 3.1536 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.1713 3.9004 -2.0693 33 1 0.6617 3.6809 -0.3783 34 1 2.3767 3.9645 -0.7608 35 1 3.5797 0.6458 1.9748 36 1 6.0122 0.3088 0.6257 37 1 5.9634 1.9928 1.2002 38 1 6.0248 1.1241 4.7365 39 1 7.8767 2.2024 3.5955 40 1 6.6682 3.0835 2.6302 41 1 8.1935 4.8513 3.9763 42 1 9.7066 7.7339 4.7126 43 1 7.5553 -0.8705 1.9513 44 1 7.7747 -0.4468 3.7329 45 1 5.3713 -1.1199 4.1890 46 1 5.1512 -1.5433 2.4076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670755634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:54 Heat of formation + Delta-G solvation = -96.626343 kcal Electronic energy + Delta-G solvation = -26309.523106 eV Core-core repulsion = 22428.020141 eV Total energy + Delta-G solvation = -3881.502964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26902 -39.03661 -37.92721 -37.35479 -34.49667 -34.03963 -33.52918 -32.63837 -31.21116 -28.75180 -27.10374 -26.58206 -25.57282 -24.10496 -22.69992 -22.27244 -20.43012 -19.84027 -19.26837 -17.92243 -17.66203 -17.17760 -16.53970 -15.99152 -15.60124 -15.32302 -15.31959 -14.61859 -14.54827 -14.44218 -14.21470 -14.08903 -13.94532 -13.60122 -13.27378 -12.93643 -12.56964 -12.51669 -12.29855 -12.19035 -11.77267 -11.73979 -11.66196 -11.50590 -11.42949 -11.12153 -11.06112 -10.88725 -10.68119 -10.41470 -10.32433 -10.22634 -9.53682 -9.36571 -9.09211 -8.47478 -8.12115 -7.98965 -6.43874 -3.85051 2.54042 2.86847 3.15971 3.24924 3.30585 3.50430 3.67192 3.86447 4.02914 4.23059 4.44745 4.47971 4.57457 4.62341 4.72054 4.82711 4.94658 5.08438 5.10819 5.22896 5.23436 5.28997 5.43765 5.45667 5.50588 5.53190 5.58287 5.61473 5.68500 5.72885 5.74944 5.82580 5.92155 5.96087 5.96588 6.22589 6.34890 6.79820 7.08685 7.44605 7.52079 7.52884 8.03098 8.16812 8.57933 9.14980 9.51175 10.02016 10.73731 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.002923 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.995206 B = 9575.940452 C =10738.619261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.074 3.926 4 H 0.088 0.912 5 O -0.358 6.358 6 C 0.028 3.972 7 C 0.488 3.512 8 O -0.530 6.530 9 N -0.715 5.715 10 C 0.167 3.833 11 C 0.037 3.963 12 N -0.626 5.626 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.585 6.585 16 N -0.562 5.562 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.900 5.900 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.206 4.206 26 C -0.166 4.166 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.404 0.596 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.354 0.646 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.393 0.607 42 H 0.272 0.728 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.423 -15.481 -9.200 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.012 3.988 4 H 0.106 0.894 5 O -0.275 6.275 6 C -0.068 4.068 7 C 0.273 3.727 8 O -0.405 6.405 9 N -0.368 5.368 10 C 0.043 3.957 11 C -0.056 4.056 12 N -0.257 5.257 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.470 6.470 16 N -0.198 5.198 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.541 5.541 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.246 4.246 26 C -0.204 4.204 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.239 0.761 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.175 0.825 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.892 -14.814 -9.770 21.362 hybrid contribution 1.202 0.431 1.109 1.691 sum -10.690 -14.383 -8.661 19.904 Atomic orbital electron populations 1.21730 0.94396 1.02058 1.02538 1.21577 0.97360 0.92888 1.03463 1.22120 0.90742 0.96449 0.89498 0.89382 1.87956 1.88057 1.21072 1.30380 1.22878 1.00088 0.81166 1.02689 1.21391 0.91294 0.77719 0.82290 1.90716 1.65069 1.45722 1.39038 1.45913 1.07656 1.64729 1.18513 1.20708 0.80347 1.02331 0.92340 1.21866 1.02726 0.87528 0.93484 1.59857 1.52154 1.09654 1.04061 1.21686 0.93860 0.92899 0.99777 1.19745 0.85032 0.84357 0.88290 1.90519 1.38833 1.78186 1.39418 1.41858 1.33422 1.18944 1.25577 1.19696 1.19197 0.99444 1.04669 0.87914 1.25276 0.95856 0.98558 0.98221 1.69614 1.22000 1.29939 1.32592 0.85854 0.78864 0.79320 0.80230 1.20399 1.20882 1.19386 1.23644 0.92059 1.05039 1.03900 1.23157 0.98464 0.95707 1.03058 0.92245 0.92568 0.91760 0.90466 0.90106 0.89259 0.93856 0.93430 0.76119 0.91113 0.90377 0.82537 0.93437 0.89502 0.77418 0.91807 0.88399 0.88384 0.88144 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.64 16 2 C -0.12 -0.90 5.61 -26.73 -0.15 -1.05 16 3 C 0.07 0.76 2.51 -27.88 -0.07 0.69 16 4 H 0.09 0.78 7.79 -51.93 -0.40 0.38 16 5 O -0.36 -4.34 9.42 -55.09 -0.52 -4.86 16 6 C 0.03 0.29 10.81 101.05 1.09 1.38 16 7 C 0.49 6.41 7.13 -10.99 -0.08 6.33 16 8 O -0.53 -9.22 16.51 -14.31 -0.24 -9.46 16 9 N -0.71 -8.03 5.42 -60.29 -0.33 -8.36 16 10 C 0.17 2.02 5.68 -4.04 -0.02 2.00 16 11 C 0.04 0.43 1.81 -131.61 -0.24 0.19 16 12 N -0.63 -9.44 6.29 -101.23 -0.64 -10.08 16 13 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 14 C 0.44 10.28 7.82 -10.99 -0.09 10.20 16 15 O -0.59 -15.60 15.79 5.55 0.09 -15.51 16 16 N -0.56 -14.24 5.29 -10.97 -0.06 -14.29 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 21 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.21 -2.02 10.07 -26.70 -0.27 -2.29 16 26 C -0.17 -1.48 9.89 -26.70 -0.26 -1.74 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.49 7.82 -51.92 -0.41 0.08 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.49 7.76 -51.93 -0.40 0.08 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.40 3.75 8.10 -40.82 -0.33 3.42 16 36 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 37 H 0.08 1.13 6.52 -51.93 -0.34 0.79 16 38 H 0.35 5.48 8.32 -39.29 -0.33 5.15 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.48 6.62 -51.92 -0.34 1.13 16 41 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -33.80 388.65 -7.57 -41.36 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -7.44 Total: 15.29 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 0.01 Total: 7.91 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.30 Total: -56.60 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.67 Total: -29.83 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.80 -7.57 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670755634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.262 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds