Wall clock time and date at job start Tue Mar 31 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46808 * 2 1 4 4 H 1.09005 * 109.46973 * 55.00124 * 3 2 1 5 5 O 1.42900 * 109.47518 * 294.99902 * 3 2 1 6 6 C 1.42901 * 114.00236 * 149.99830 * 5 3 2 7 7 C 1.50700 * 109.46932 * 174.99736 * 3 2 1 8 8 O 1.21283 * 119.99609 * 115.00596 * 7 3 2 9 9 N 1.34775 * 120.00140 * 295.00015 * 7 3 2 10 10 C 1.46503 * 120.00000 * 179.97438 * 9 7 3 11 11 C 1.53005 * 109.46948 * 175.57450 * 10 9 7 12 12 N 1.46895 * 115.54923 * 279.61218 * 11 10 9 13 13 C 1.46893 * 111.00492 * 294.62910 * 12 11 10 14 14 C 1.50696 * 109.47424 * 179.58952 * 13 12 11 15 15 O 1.21288 * 120.00138 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00251 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00459 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99988 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00268 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46772 * 90.00000 * 21 19 17 23 23 H 1.48502 * 109.47333 * 210.00225 * 21 19 17 24 24 H 1.48497 * 109.47114 * 330.00528 * 21 19 17 25 25 C 1.52993 * 117.49542 * 133.94643 * 11 10 9 26 26 C 1.52996 * 117.49657 * 65.28777 * 11 10 9 27 27 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47732 * 299.99918 * 1 2 3 29 29 H 1.09008 * 109.46934 * 59.99997 * 1 2 3 30 30 H 1.08999 * 109.47450 * 240.00422 * 2 1 3 31 31 H 1.08996 * 109.47244 * 119.99758 * 2 1 3 32 32 H 1.08998 * 109.47358 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.47311 * 300.00703 * 6 5 3 34 34 H 1.09001 * 109.46660 * 59.99781 * 6 5 3 35 35 H 0.97005 * 120.00092 * 0.27810 * 9 7 3 36 36 H 1.09005 * 109.46974 * 295.57393 * 10 9 7 37 37 H 1.08993 * 109.46942 * 55.57711 * 10 9 7 38 38 H 1.00903 * 110.99820 * 170.67214 * 12 11 10 39 39 H 1.09003 * 109.46999 * 299.59512 * 13 12 11 40 40 H 1.09007 * 109.46928 * 59.59046 * 13 12 11 41 41 H 0.97007 * 119.99967 * 0.02562 * 16 14 13 42 42 H 0.97006 * 120.00218 * 180.02562 * 20 19 17 43 43 H 1.09003 * 117.50382 * 359.97438 * 25 11 10 44 44 H 1.09000 * 117.49932 * 145.01957 * 25 11 10 45 45 H 1.09008 * 117.49543 * 214.97577 * 26 11 10 46 46 H 1.08998 * 117.50454 * 359.97052 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8419 5 8 1.6619 2.0815 -1.2210 6 6 1.4558 3.4904 -1.1002 7 6 3.5418 1.4444 0.1239 8 8 4.2249 1.8613 -0.7875 9 7 4.1259 0.9829 1.2474 10 6 5.5860 0.9842 1.3676 11 6 5.9827 0.5174 2.7697 12 7 5.8975 1.5364 3.8244 13 6 6.8677 2.6149 3.5940 14 6 6.7441 3.6440 4.6880 15 8 5.9283 3.4935 5.5728 16 7 7.5407 4.7311 4.6838 17 6 7.4286 5.6670 5.6792 18 1 6.7016 5.5335 6.4667 19 6 8.2496 6.7881 5.6746 20 7 9.1331 6.9514 4.7156 21 14 8.0963 8.0637 7.0306 22 1 9.0063 7.7087 8.1492 23 1 8.4650 9.3998 6.4974 24 1 6.6958 8.0966 7.5232 25 6 7.1018 -0.5201 2.8785 26 6 5.6518 -0.9262 3.1536 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.1713 3.9004 -2.0693 33 1 0.6617 3.6809 -0.3783 34 1 2.3767 3.9645 -0.7608 35 1 3.5797 0.6458 1.9748 36 1 6.0122 0.3088 0.6257 37 1 5.9634 1.9928 1.2002 38 1 6.0248 1.1241 4.7365 39 1 7.8767 2.2024 3.5955 40 1 6.6682 3.0835 2.6302 41 1 8.1935 4.8513 3.9763 42 1 9.7066 7.7339 4.7126 43 1 7.5553 -0.8705 1.9513 44 1 7.7747 -0.4468 3.7329 45 1 5.3713 -1.1199 4.1890 46 1 5.1512 -1.5433 2.4076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670755634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:53 Heat of formation + Delta-G solvation = -122.919708 kcal Electronic energy + Delta-G solvation = -26310.663271 eV Core-core repulsion = 22428.020141 eV Total energy + Delta-G solvation = -3882.643130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25760 -40.36696 -39.39223 -38.33856 -36.04822 -35.44852 -34.30607 -33.91768 -33.22059 -29.57003 -28.28642 -27.91561 -26.40882 -25.89850 -23.47537 -22.96444 -21.39769 -21.14054 -20.76447 -19.93560 -18.63582 -18.05682 -17.90035 -17.03592 -16.99399 -16.47510 -16.38245 -16.25662 -15.83327 -15.71214 -15.41942 -15.27500 -14.88452 -14.65512 -14.36110 -14.16425 -13.86116 -13.59765 -13.52851 -13.34775 -13.00094 -12.94159 -12.87220 -12.49622 -12.44283 -12.40365 -12.13926 -12.04609 -11.89933 -11.72156 -11.60587 -11.52534 -11.20222 -10.39436 -10.30430 -10.10864 -10.04778 -9.28829 -8.49016 -5.98362 1.36405 1.40340 1.53319 1.53683 1.97504 2.00918 2.26063 2.61587 2.79065 3.02515 3.18120 3.40886 3.59498 3.65392 3.77587 3.90044 3.95556 4.01670 4.24544 4.36360 4.41407 4.42622 4.47729 4.48713 4.55482 4.59301 4.68070 4.76169 4.78069 4.79513 4.87791 4.99949 5.10408 5.18289 5.21829 5.38028 5.38672 5.44650 5.82901 5.97897 6.03652 6.32909 6.55112 6.56053 7.09175 7.20410 7.52231 8.06469 8.68459 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.002923 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.995206 B = 9575.940452 C =10738.619261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.073 3.927 4 H 0.105 0.895 5 O -0.377 6.377 6 C 0.025 3.975 7 C 0.483 3.517 8 O -0.580 6.580 9 N -0.702 5.702 10 C 0.169 3.831 11 C 0.020 3.980 12 N -0.635 5.635 13 C 0.067 3.933 14 C 0.439 3.561 15 O -0.620 6.620 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.081 0.919 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.994 3.006 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.199 4.199 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.352 0.648 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 -16.917 -8.777 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.011 3.989 4 H 0.123 0.877 5 O -0.294 6.294 6 C -0.071 4.071 7 C 0.270 3.730 8 O -0.460 6.460 9 N -0.355 5.355 10 C 0.045 3.955 11 C -0.072 4.072 12 N -0.266 5.266 13 C -0.065 4.065 14 C 0.227 3.773 15 O -0.506 6.506 16 N -0.210 5.210 17 C -0.463 4.463 18 H 0.099 0.901 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.818 3.182 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.240 4.240 26 C -0.178 4.178 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.172 0.828 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.588 -16.287 -9.339 22.604 hybrid contribution 1.407 0.816 0.962 1.890 sum -11.181 -15.470 -8.377 20.845 Atomic orbital electron populations 1.21711 0.93357 1.02944 1.02386 1.21621 0.98158 0.90981 1.04030 1.22342 0.88763 0.98226 0.89526 0.87730 1.87934 1.87981 1.21844 1.31661 1.22977 0.99633 0.80416 1.04056 1.21995 0.92453 0.76682 0.81853 1.90688 1.66364 1.48100 1.40851 1.45859 1.07574 1.63785 1.18311 1.20635 0.80749 1.00987 0.93156 1.21772 1.05617 0.87846 0.92012 1.59800 1.51510 1.10372 1.04948 1.21456 0.95710 0.92242 0.97110 1.20754 0.83360 0.84420 0.88795 1.90484 1.39963 1.78974 1.41204 1.41950 1.34174 1.19485 1.25419 1.19681 1.19970 1.01209 1.05482 0.90101 1.26084 0.95078 0.99867 1.00345 1.69682 1.22239 1.30622 1.33693 0.84910 0.78691 0.77038 0.77602 1.19441 1.19662 1.19623 1.23686 0.92423 1.03401 1.04444 1.23278 0.97590 0.92919 1.04050 0.90841 0.91705 0.92935 0.91510 0.87886 0.88035 0.91698 0.95708 0.74738 0.90116 0.93239 0.82786 0.91507 0.89114 0.77137 0.91275 0.87077 0.88696 0.87521 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.81 71.98 0.71 -0.94 16 2 C -0.11 -1.51 5.61 30.59 0.17 -1.33 16 3 C 0.07 1.44 2.51 29.85 0.08 1.51 16 4 H 0.11 1.70 7.79 -2.38 -0.02 1.68 16 5 O -0.38 -9.04 9.42 -129.99 -1.22 -10.26 16 6 C 0.03 0.51 10.81 113.37 1.23 1.74 16 7 C 0.48 12.55 7.13 87.66 0.63 13.18 16 8 O -0.58 -20.73 16.51 15.95 0.26 -20.46 16 9 N -0.70 -14.95 5.42 -463.05 -2.51 -17.45 16 10 C 0.17 3.94 5.68 86.38 0.49 4.43 16 11 C 0.02 0.42 1.81 3.53 0.01 0.43 16 12 N -0.64 -18.55 6.29 -474.18 -2.98 -21.53 16 13 C 0.07 2.31 6.01 85.56 0.51 2.83 16 14 C 0.44 20.86 7.82 87.66 0.69 21.54 16 15 O -0.62 -33.70 15.79 -3.06 -0.05 -33.75 16 16 N -0.57 -29.75 5.29 -306.99 -1.62 -31.37 16 17 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 18 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 20 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 21 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 C -0.20 -3.37 10.07 30.62 0.31 -3.07 16 26 C -0.14 -2.04 9.89 30.62 0.30 -1.73 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.72 7.82 -2.38 -0.02 0.70 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 0.93 7.76 -2.39 -0.02 0.91 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.42 6.82 8.10 -92.70 -0.75 6.06 16 36 H 0.08 1.73 7.95 -2.38 -0.02 1.71 16 37 H 0.05 1.45 6.52 -2.39 -0.02 1.43 16 38 H 0.35 10.54 8.32 -89.69 -0.75 9.79 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.09 3.10 6.62 -2.38 -0.02 3.09 16 41 H 0.40 19.72 7.90 -92.70 -0.73 18.99 16 42 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 43 H 0.11 1.62 8.08 -2.39 -0.02 1.60 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.95 388.65 -0.64 -75.59 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: -1.22 Total: 44.23 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.39 Total: 20.06 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -6.83 Total: -120.45 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: -1.01 Total: -64.48 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -74.95 -0.64 -75.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670755634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.333 kcal (2) G-P(sol) polarization free energy of solvation -74.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds