Wall clock time and date at job start Tue Mar 31 2020 04:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 113.99904 * 2 1 4 4 C 1.53004 * 109.47153 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47086 * 65.00274 * 4 3 2 6 6 C 1.46765 * 124.35348 * 89.99628 * 5 4 3 7 7 C 1.54480 * 105.47460 * 197.03782 * 6 5 4 8 8 H 1.09002 * 110.96791 * 92.70544 * 7 6 5 9 9 C 1.50705 * 110.96789 * 216.43182 * 7 6 5 10 10 O 1.21280 * 119.99981 * 356.90916 * 9 7 6 11 11 N 1.34779 * 119.99843 * 176.91174 * 9 7 6 12 12 C 1.46502 * 120.00113 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47026 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47078 * 295.00427 * 13 12 11 15 15 C 1.53001 * 109.46632 * 175.00289 * 13 12 11 16 16 N 1.46497 * 109.47307 * 55.00283 * 13 12 11 17 17 C 1.36934 * 120.00342 * 204.99732 * 16 13 12 18 18 H 1.08002 * 119.99552 * 359.97438 * 17 16 13 19 19 C 1.38812 * 120.00335 * 179.97438 * 17 16 13 20 20 N 1.31624 * 119.99870 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00013 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47116 * 60.00206 * 21 19 17 23 23 H 1.48507 * 109.47119 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47265 * 299.99763 * 21 19 17 25 25 C 1.54628 * 101.76599 * 334.58670 * 7 6 5 26 26 C 1.34423 * 124.34888 * 270.02749 * 5 4 3 27 27 O 1.21283 * 124.93769 * 359.60150 * 26 5 4 28 28 H 1.09003 * 109.47184 * 299.99723 * 1 2 3 29 29 H 1.09001 * 109.47267 * 60.00199 * 1 2 3 30 30 H 1.09006 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47484 * 60.00112 * 3 2 1 32 32 H 1.08999 * 109.47294 * 300.00208 * 3 2 1 33 33 H 1.08999 * 109.46760 * 304.99794 * 4 3 2 34 34 H 1.09000 * 109.46976 * 185.00111 * 4 3 2 35 35 H 1.09000 * 110.24226 * 78.03998 * 6 5 4 36 36 H 1.08995 * 110.31887 * 316.08186 * 6 5 4 37 37 H 0.96999 * 119.99735 * 359.97438 * 11 9 7 38 38 H 1.08997 * 109.46975 * 300.00636 * 12 11 9 39 39 H 1.09000 * 109.46332 * 60.00179 * 12 11 9 40 40 H 1.09004 * 109.46709 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47502 * 299.99878 * 15 13 12 42 42 H 1.09003 * 109.47214 * 60.00596 * 15 13 12 43 43 H 0.97005 * 119.99683 * 25.00237 * 16 13 12 44 44 H 0.97000 * 120.00215 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.48722 * 143.47460 * 25 7 6 46 46 H 1.09007 * 110.48479 * 266.11739 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.3109 1.3087 -2.4724 7 6 4.2860 0.2656 -3.6117 8 1 3.3048 0.2284 -4.0850 9 6 5.3616 0.5512 -4.6279 10 8 6.0632 1.5332 -4.5086 11 7 5.5437 -0.2847 -5.6693 12 6 6.5889 -0.0069 -6.6576 13 6 6.5832 -1.1008 -7.7272 14 1 6.8600 -2.0530 -7.2745 15 6 7.5887 -0.7463 -8.8245 16 7 5.2430 -1.2080 -8.3089 17 6 4.8362 -2.3845 -8.8794 18 1 5.5036 -3.2334 -8.9007 19 6 3.5661 -2.4863 -9.4302 20 7 2.7529 -1.4516 -9.4045 21 14 3.0116 -4.0910 -10.2089 22 1 3.0497 -5.1734 -9.1930 23 1 1.6255 -3.9401 -10.7203 24 1 3.9186 -4.4351 -11.3332 25 6 4.5810 -1.0448 -2.8458 26 6 4.1238 -0.7594 -1.4323 27 8 3.9200 -1.6025 -0.5845 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8463 -0.8899 33 1 3.8514 0.5682 0.8410 34 1 3.9784 2.1765 0.0889 35 1 5.3046 1.7481 -2.3850 36 1 3.5700 2.0866 -2.6569 37 1 4.9827 -1.0703 -5.7645 38 1 6.3991 0.9592 -7.1253 39 1 7.5601 0.0133 -6.1631 40 1 7.5850 -1.5259 -9.5864 41 1 7.3119 0.2059 -9.2772 42 1 8.5859 -0.6666 -8.3917 43 1 4.6437 -0.4454 -8.2901 44 1 1.8655 -1.5225 -9.7897 45 1 4.0122 -1.8716 -3.2711 46 1 5.6484 -1.2655 -2.8644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690582098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:37 Heat of formation + Delta-G solvation = -104.580477 kcal Electronic energy + Delta-G solvation = -26600.741341 eV Core-core repulsion = 22718.893460 eV Total energy + Delta-G solvation = -3881.847881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80968 -39.16924 -37.93897 -36.56424 -36.00841 -33.75709 -33.34296 -31.85337 -29.56820 -28.73427 -27.76167 -26.57055 -25.97930 -23.88309 -23.36427 -22.52787 -20.26544 -19.80798 -19.45288 -17.60638 -17.29114 -17.12885 -16.72898 -15.95002 -15.68366 -15.60422 -15.37734 -15.13497 -14.77303 -14.43923 -13.95488 -13.75049 -13.66559 -13.22722 -13.15123 -12.95185 -12.91557 -12.26895 -12.21848 -12.16841 -12.02486 -12.00329 -11.60057 -11.42382 -11.35479 -11.31749 -10.89130 -10.79526 -10.41489 -10.09049 -10.00293 -9.86799 -9.75987 -9.54279 -9.02519 -8.81141 -8.71755 -7.09452 -5.86077 -3.16521 2.60025 2.75133 2.82988 3.38308 3.42918 3.44396 3.44590 3.57629 4.19832 4.32516 4.51180 4.74522 4.79210 4.83299 4.85421 5.00964 5.08425 5.15237 5.17046 5.21372 5.37885 5.41276 5.43284 5.49321 5.50184 5.52774 5.57734 5.70003 5.83845 5.88843 6.03316 6.13772 6.26284 6.39257 6.51288 6.69319 6.76277 6.94247 6.98550 7.04997 7.61649 7.81348 8.18442 8.31358 8.42222 9.43533 9.97557 10.33189 11.35677 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.003220 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.314049 B = 8692.520553 C =10040.642313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.040 3.960 4 C 0.130 3.870 5 N -0.620 5.620 6 C 0.120 3.880 7 C -0.123 4.123 8 H 0.119 0.881 9 C 0.524 3.476 10 O -0.551 6.551 11 N -0.706 5.706 12 C 0.114 3.886 13 C 0.159 3.841 14 H 0.054 0.946 15 C -0.163 4.163 16 N -0.724 5.724 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.145 4.145 26 C 0.526 3.474 27 O -0.518 6.518 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.412 0.588 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.039 0.961 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.112 0.888 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 7.351 16.875 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.038 4.038 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.004 4.004 7 C -0.145 4.145 8 H 0.137 0.863 9 C 0.308 3.692 10 O -0.430 6.430 11 N -0.357 5.357 12 C -0.010 4.010 13 C 0.049 3.951 14 H 0.072 0.928 15 C -0.223 4.223 16 N -0.366 5.366 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.185 4.185 26 C 0.314 3.686 27 O -0.393 6.393 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.249 0.751 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.131 0.869 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.224 7.276 17.397 18.897 hybrid contribution -1.196 -0.599 -0.816 1.567 sum 0.028 6.677 16.581 17.875 Atomic orbital electron populations 1.22735 0.81322 1.02848 0.99594 1.88067 1.19301 1.26713 1.95269 1.23023 0.94526 0.85796 1.00472 1.21387 0.92104 0.99292 0.86478 1.48188 1.67450 1.07345 1.12492 1.21944 1.02796 0.93758 0.81865 1.22210 1.00788 0.96206 0.95305 0.86275 1.19971 0.84158 0.82993 0.82038 1.90673 1.47822 1.28319 1.76184 1.45965 1.37013 1.28093 1.24604 1.21725 0.90060 0.99810 0.89410 1.20513 0.87946 0.95432 0.91241 0.92804 1.22366 0.97785 1.01867 1.00330 1.42463 1.10896 1.13951 1.69311 1.19172 0.97377 0.90475 1.30522 0.91155 1.24732 0.96816 0.97460 1.01520 1.69649 1.08321 1.29287 1.50560 0.86293 0.77603 0.83148 0.79258 1.21180 1.21737 1.21304 1.22343 1.04641 0.98149 0.93394 1.20661 0.76182 0.82114 0.89657 1.90726 1.50655 1.49143 1.48778 0.94350 0.94198 0.89634 0.92432 0.93006 0.89123 0.88685 0.89078 0.90105 0.75082 0.91698 0.91712 0.92307 0.93205 0.94187 0.78099 0.93396 0.86926 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.57 10.26 -35.23 -0.36 -4.93 16 3 C 0.04 0.35 6.28 37.16 0.23 0.59 16 4 C 0.13 1.17 6.33 -4.04 -0.03 1.14 16 5 N -0.62 -6.94 2.90 -172.42 -0.50 -7.44 16 6 C 0.12 1.24 6.69 -3.12 -0.02 1.22 16 7 C -0.12 -1.42 3.54 -90.14 -0.32 -1.74 16 8 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 9 C 0.52 7.49 7.06 -10.98 -0.08 7.41 16 10 O -0.55 -9.29 15.53 5.56 0.09 -9.21 16 11 N -0.71 -10.57 5.38 -60.29 -0.32 -10.89 16 12 C 0.11 1.80 5.23 -4.04 -0.02 1.78 16 13 C 0.16 2.82 3.05 -67.93 -0.21 2.61 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 16 N -0.72 -16.25 4.56 -53.43 -0.24 -16.49 16 17 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -26.43 13.06 55.49 0.72 -25.70 16 21 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.14 -1.69 6.40 -26.74 -0.17 -1.86 16 26 C 0.53 7.26 7.72 -10.86 -0.08 7.18 16 27 O -0.52 -9.06 17.49 5.56 0.10 -8.96 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.92 7.92 -51.93 -0.41 0.51 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 1.01 7.01 -51.93 -0.36 0.65 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.41 6.33 8.14 -40.82 -0.33 6.00 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.38 9.37 7.80 -40.82 -0.32 9.05 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.11 1.20 7.89 -51.93 -0.41 0.79 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -32.77 385.26 -6.93 -39.70 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.72 Total: 11.13 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 0.53 Total: 10.67 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.34 Total: -60.53 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.18 Total: -23.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.77 -6.93 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690582098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.877 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds