Wall clock time and date at job start Tue Mar 31 2020 04:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 113.99904 * 2 1 4 4 C 1.53004 * 109.47153 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47086 * 65.00274 * 4 3 2 6 6 C 1.46765 * 124.35348 * 89.99628 * 5 4 3 7 7 C 1.54480 * 105.47460 * 197.03782 * 6 5 4 8 8 H 1.09002 * 110.96791 * 92.70544 * 7 6 5 9 9 C 1.50705 * 110.96789 * 216.43182 * 7 6 5 10 10 O 1.21280 * 119.99981 * 356.90916 * 9 7 6 11 11 N 1.34779 * 119.99843 * 176.91174 * 9 7 6 12 12 C 1.46502 * 120.00113 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47026 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47078 * 295.00427 * 13 12 11 15 15 C 1.53001 * 109.46632 * 175.00289 * 13 12 11 16 16 N 1.46497 * 109.47307 * 55.00283 * 13 12 11 17 17 C 1.36934 * 120.00342 * 204.99732 * 16 13 12 18 18 H 1.08002 * 119.99552 * 359.97438 * 17 16 13 19 19 C 1.38812 * 120.00335 * 179.97438 * 17 16 13 20 20 N 1.31624 * 119.99870 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00013 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47116 * 60.00206 * 21 19 17 23 23 H 1.48507 * 109.47119 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47265 * 299.99763 * 21 19 17 25 25 C 1.54628 * 101.76599 * 334.58670 * 7 6 5 26 26 C 1.34423 * 124.34888 * 270.02749 * 5 4 3 27 27 O 1.21283 * 124.93769 * 359.60150 * 26 5 4 28 28 H 1.09003 * 109.47184 * 299.99723 * 1 2 3 29 29 H 1.09001 * 109.47267 * 60.00199 * 1 2 3 30 30 H 1.09006 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47484 * 60.00112 * 3 2 1 32 32 H 1.08999 * 109.47294 * 300.00208 * 3 2 1 33 33 H 1.08999 * 109.46760 * 304.99794 * 4 3 2 34 34 H 1.09000 * 109.46976 * 185.00111 * 4 3 2 35 35 H 1.09000 * 110.24226 * 78.03998 * 6 5 4 36 36 H 1.08995 * 110.31887 * 316.08186 * 6 5 4 37 37 H 0.96999 * 119.99735 * 359.97438 * 11 9 7 38 38 H 1.08997 * 109.46975 * 300.00636 * 12 11 9 39 39 H 1.09000 * 109.46332 * 60.00179 * 12 11 9 40 40 H 1.09004 * 109.46709 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47502 * 299.99878 * 15 13 12 42 42 H 1.09003 * 109.47214 * 60.00596 * 15 13 12 43 43 H 0.97005 * 119.99683 * 25.00237 * 16 13 12 44 44 H 0.97000 * 120.00215 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.48722 * 143.47460 * 25 7 6 46 46 H 1.09007 * 110.48479 * 266.11739 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.3109 1.3087 -2.4724 7 6 4.2860 0.2656 -3.6117 8 1 3.3048 0.2284 -4.0850 9 6 5.3616 0.5512 -4.6279 10 8 6.0632 1.5332 -4.5086 11 7 5.5437 -0.2847 -5.6693 12 6 6.5889 -0.0069 -6.6576 13 6 6.5832 -1.1008 -7.7272 14 1 6.8600 -2.0530 -7.2745 15 6 7.5887 -0.7463 -8.8245 16 7 5.2430 -1.2080 -8.3089 17 6 4.8362 -2.3845 -8.8794 18 1 5.5036 -3.2334 -8.9007 19 6 3.5661 -2.4863 -9.4302 20 7 2.7529 -1.4516 -9.4045 21 14 3.0116 -4.0910 -10.2089 22 1 3.0497 -5.1734 -9.1930 23 1 1.6255 -3.9401 -10.7203 24 1 3.9186 -4.4351 -11.3332 25 6 4.5810 -1.0448 -2.8458 26 6 4.1238 -0.7594 -1.4323 27 8 3.9200 -1.6025 -0.5845 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8463 -0.8899 33 1 3.8514 0.5682 0.8410 34 1 3.9784 2.1765 0.0889 35 1 5.3046 1.7481 -2.3850 36 1 3.5700 2.0866 -2.6569 37 1 4.9827 -1.0703 -5.7645 38 1 6.3991 0.9592 -7.1253 39 1 7.5601 0.0133 -6.1631 40 1 7.5850 -1.5259 -9.5864 41 1 7.3119 0.2059 -9.2772 42 1 8.5859 -0.6666 -8.3917 43 1 4.6437 -0.4454 -8.2901 44 1 1.8655 -1.5225 -9.7897 45 1 4.0122 -1.8716 -3.2711 46 1 5.6484 -1.2655 -2.8644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690582098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:37 Heat of formation + Delta-G solvation = -128.675171 kcal Electronic energy + Delta-G solvation = -26601.786165 eV Core-core repulsion = 22718.893460 eV Total energy + Delta-G solvation = -3882.892706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82958 -40.32362 -38.73670 -37.97400 -37.16985 -35.18747 -34.39174 -33.46065 -30.67823 -30.20027 -28.73263 -27.44906 -27.04887 -25.66590 -24.35145 -23.46309 -21.68408 -20.96833 -20.42560 -19.31884 -18.45833 -18.09525 -17.53342 -17.09859 -16.84516 -16.67748 -16.44652 -16.22010 -16.05713 -15.60434 -15.44451 -15.10323 -14.66935 -14.56642 -14.29490 -14.05536 -13.69083 -13.62786 -13.60369 -13.31730 -13.03529 -13.00236 -12.73480 -12.72246 -12.55387 -12.43349 -12.30295 -12.20724 -12.07806 -11.66978 -11.61952 -11.13661 -10.93483 -10.70618 -10.59210 -9.98141 -9.71013 -8.98667 -7.89104 -5.17099 1.52809 1.53073 1.54562 1.58813 1.62372 1.92665 2.31530 2.60223 2.91334 3.23146 3.38204 3.45693 3.77489 3.90522 3.93571 4.03587 4.08330 4.16471 4.23393 4.37699 4.44383 4.45384 4.48720 4.53996 4.57779 4.63970 4.68463 4.78137 4.78988 4.83215 4.86325 4.92157 4.95531 5.10204 5.30476 5.44830 5.55095 5.59864 5.63369 6.07542 6.28869 6.32090 6.60492 7.16526 7.23624 7.40184 8.12895 8.37157 9.33162 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.003220 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.314049 B = 8692.520553 C =10040.642313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.037 3.963 4 C 0.122 3.878 5 N -0.613 5.613 6 C 0.124 3.876 7 C -0.115 4.115 8 H 0.128 0.872 9 C 0.528 3.472 10 O -0.574 6.574 11 N -0.708 5.708 12 C 0.123 3.877 13 C 0.158 3.842 14 H 0.059 0.941 15 C -0.156 4.156 16 N -0.731 5.731 17 C -0.234 4.234 18 H 0.076 0.924 19 C -0.067 4.067 20 N -0.965 5.965 21 Si 0.962 3.038 22 H -0.278 1.278 23 H -0.301 1.301 24 H -0.284 1.284 25 C -0.139 4.139 26 C 0.518 3.482 27 O -0.564 6.564 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.411 0.589 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.374 0.626 44 H 0.248 0.752 45 H 0.115 0.885 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 8.008 17.440 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.040 4.040 4 C 0.001 3.999 5 N -0.346 5.346 6 C 0.002 3.998 7 C -0.136 4.136 8 H 0.146 0.854 9 C 0.314 3.686 10 O -0.455 6.455 11 N -0.358 5.358 12 C -0.001 4.001 13 C 0.049 3.951 14 H 0.077 0.923 15 C -0.217 4.217 16 N -0.372 5.372 17 C -0.366 4.366 18 H 0.094 0.906 19 C -0.260 4.260 20 N -0.615 5.615 21 Si 0.793 3.207 22 H -0.204 1.204 23 H -0.228 1.228 24 H -0.211 1.211 25 C -0.179 4.179 26 C 0.307 3.693 27 O -0.442 6.442 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.248 0.752 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.206 0.794 44 H 0.057 0.943 45 H 0.133 0.867 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.911 7.953 17.971 19.745 hybrid contribution -1.294 -0.746 -0.953 1.772 sum 0.617 7.207 17.018 18.492 Atomic orbital electron populations 1.22827 0.80166 1.03006 1.00751 1.88025 1.20834 1.28815 1.95551 1.23170 0.93949 0.84891 1.02008 1.21672 0.92779 1.00527 0.84895 1.48296 1.66199 1.06672 1.13451 1.21982 1.03405 0.93580 0.80871 1.22149 1.00053 0.96504 0.94929 0.85389 1.20297 0.84144 0.82235 0.81938 1.90665 1.48834 1.29230 1.76746 1.45981 1.36905 1.28197 1.24719 1.21582 0.91180 0.98294 0.89058 1.20689 0.85942 0.96505 0.91923 0.92300 1.22249 0.99168 1.00820 0.99421 1.42580 1.12577 1.12661 1.69370 1.19508 0.97023 0.91388 1.28644 0.90606 1.25373 0.97417 0.99972 1.03225 1.69787 1.08327 1.30981 1.52418 0.85381 0.76458 0.80365 0.78522 1.20436 1.22812 1.21055 1.22302 1.04930 0.98362 0.92344 1.20965 0.75819 0.82669 0.89876 1.90697 1.52914 1.50471 1.50155 0.92541 0.93602 0.90119 0.89998 0.92201 0.90649 0.85157 0.89335 0.87872 0.75236 0.92758 0.89883 0.93909 0.93840 0.90837 0.79386 0.94265 0.86664 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -9.77 10.26 -148.98 -1.53 -11.30 16 3 C 0.04 0.58 6.28 71.98 0.45 1.04 16 4 C 0.12 2.00 6.33 86.38 0.55 2.55 16 5 N -0.61 -12.85 2.90 -818.00 -2.37 -15.22 16 6 C 0.12 2.31 6.69 86.83 0.58 2.89 16 7 C -0.11 -2.46 3.54 -10.48 -0.04 -2.50 16 8 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 9 C 0.53 14.29 7.06 87.66 0.62 14.91 16 10 O -0.57 -18.40 15.53 -3.03 -0.05 -18.45 16 11 N -0.71 -20.25 5.38 -463.06 -2.49 -22.74 16 12 C 0.12 3.67 5.23 86.38 0.45 4.12 16 13 C 0.16 5.35 3.05 44.99 0.14 5.49 16 14 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 15 C -0.16 -4.88 9.49 71.98 0.68 -4.20 16 16 N -0.73 -32.32 4.56 -322.95 -1.47 -33.80 16 17 C -0.23 -11.74 9.93 84.03 0.83 -10.90 16 18 H 0.08 3.67 7.83 -2.91 -0.02 3.65 16 19 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 20 N -0.96 -55.27 13.06 21.65 0.28 -54.99 16 21 Si 0.96 43.85 29.55 68.60 2.03 45.88 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 C -0.14 -3.13 6.40 30.59 0.20 -2.93 16 26 C 0.52 14.10 7.72 87.90 0.68 14.78 16 27 O -0.56 -20.07 17.49 -3.04 -0.05 -20.12 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.49 7.92 -2.39 -0.02 1.47 16 34 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.77 7.01 -2.39 -0.02 1.75 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.41 12.20 8.14 -92.71 -0.75 11.44 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 43 H 0.37 18.19 7.80 -92.70 -0.72 17.46 16 44 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.11 2.40 7.89 -2.38 -0.02 2.39 16 Total: -1.00 -70.38 385.26 0.71 -69.67 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.50 Total: 37.21 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: 6.86 Total: 23.86 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -6.05 Total: -126.75 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -1.63 Total: -49.87 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.38 0.71 -69.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690582098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.005 kcal (2) G-P(sol) polarization free energy of solvation -70.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds