Wall clock time and date at job start Tue Mar 31 2020 04:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00360 * 2 1 4 4 C 1.50697 * 109.47326 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99762 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99887 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99663 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.46912 * 325.00099 * 7 6 4 9 9 C 1.50704 * 109.46793 * 205.00082 * 7 6 4 10 10 O 1.21276 * 120.00049 * 332.12222 * 9 7 6 11 11 N 1.34779 * 119.99483 * 151.84845 * 9 7 6 12 12 C 1.46501 * 119.99326 * 175.52760 * 11 9 7 13 13 C 1.53950 * 113.73810 * 253.73942 * 12 11 9 14 14 N 1.47820 * 86.03264 * 222.08451 * 13 12 11 15 15 C 1.36934 * 134.45757 * 204.64073 * 14 13 12 16 16 H 1.07994 * 120.00415 * 179.87238 * 15 14 13 17 17 C 1.38818 * 119.99638 * 359.87122 * 15 14 13 18 18 N 1.31614 * 120.00121 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99893 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46968 * 90.00167 * 19 17 15 21 21 H 1.48494 * 109.47248 * 210.00568 * 19 17 15 22 22 H 1.48505 * 109.46993 * 330.00253 * 19 17 15 23 23 C 1.47583 * 91.05000 * 24.55131 * 14 13 12 24 24 C 1.53003 * 109.47133 * 85.00037 * 7 6 4 25 25 C 1.52998 * 109.47006 * 182.10751 * 24 7 6 26 26 C 1.52997 * 109.46994 * 302.10727 * 24 7 6 27 27 H 1.08998 * 109.47379 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46824 * 300.00499 * 1 2 3 29 29 H 1.09002 * 109.46913 * 60.00156 * 1 2 3 30 30 H 1.09000 * 109.47205 * 59.99767 * 3 2 1 31 31 H 1.09000 * 109.46694 * 300.00067 * 3 2 1 32 32 H 0.96991 * 120.00236 * 359.97438 * 6 4 3 33 33 H 0.96995 * 120.00300 * 355.52704 * 11 9 7 34 34 H 1.08995 * 112.94524 * 25.33389 * 12 11 9 35 35 H 1.08993 * 113.77252 * 336.35072 * 13 12 11 36 36 H 1.08995 * 113.76705 * 107.75434 * 13 12 11 37 37 H 0.97000 * 119.99953 * 180.02562 * 18 17 15 38 38 H 1.08999 * 113.76693 * 221.14434 * 23 14 13 39 39 H 1.08996 * 113.76754 * 89.75495 * 23 14 13 40 40 H 1.09005 * 109.46889 * 62.10552 * 24 7 6 41 41 H 1.08998 * 109.47357 * 53.95244 * 25 24 7 42 42 H 1.08996 * 109.46954 * 173.96219 * 25 24 7 43 43 H 1.09003 * 109.46745 * 293.95615 * 25 24 7 44 44 H 1.08993 * 109.47696 * 59.99900 * 26 24 7 45 45 H 1.09003 * 109.47169 * 179.97438 * 26 24 7 46 46 H 1.09005 * 109.47159 * 299.99658 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0914 -0.0015 6 7 4.2766 2.2967 -0.0013 7 6 5.7370 2.1810 -0.0025 8 1 6.0331 1.3131 0.5867 9 6 6.3400 3.4250 0.5976 10 8 5.7483 4.4812 0.5253 11 7 7.5342 3.3626 1.2192 12 6 8.1661 4.5874 1.7161 13 6 9.3657 5.0526 0.8708 14 7 10.0329 5.3348 2.1594 15 6 11.0371 6.1774 2.5551 16 1 11.3502 6.1966 3.5885 17 6 11.6528 7.0070 1.6278 18 7 11.2710 6.9839 0.3685 19 14 13.0223 8.1570 2.1677 20 1 14.3292 7.4629 2.0440 21 1 13.0209 9.3669 1.3068 22 1 12.8054 8.5555 3.5818 23 6 9.1810 4.3458 2.8481 24 6 6.2343 2.0153 -1.4399 25 6 7.7544 1.8418 -1.4368 26 6 5.5814 0.7816 -2.0664 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8595 3.1724 -0.0017 33 1 7.9752 2.5069 1.3377 34 1 7.4481 5.3785 1.9318 35 1 9.8361 4.2533 0.2983 36 1 9.1644 5.9428 0.2749 37 1 11.7015 7.5633 -0.2795 38 1 8.8326 4.6727 3.8278 39 1 9.5971 3.3385 2.8576 40 1 5.9707 2.8999 -2.0197 41 1 8.0253 1.0226 -0.7707 42 1 8.0965 1.6171 -2.4470 43 1 8.2245 2.7622 -1.0904 44 1 4.4985 0.9052 -2.0686 45 1 5.9354 0.6639 -3.0906 46 1 5.8450 -0.1030 -1.4866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692242575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:14 Heat of formation + Delta-G solvation = -60.996782 kcal Electronic energy + Delta-G solvation = -26787.503061 eV Core-core repulsion = 22907.545110 eV Total energy + Delta-G solvation = -3879.957951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74812 -39.44350 -38.00614 -37.47921 -35.88216 -33.91625 -33.28859 -31.84553 -29.63648 -28.06668 -27.05864 -26.90761 -25.65581 -24.89136 -23.17359 -21.11655 -20.79137 -20.19881 -19.59839 -18.02357 -17.21649 -16.85861 -16.69084 -16.48175 -15.91324 -15.66301 -15.42606 -14.94201 -14.84615 -14.54461 -14.13156 -13.86943 -13.46538 -13.35514 -12.80576 -12.75237 -12.63853 -12.44583 -12.10679 -11.99433 -11.83697 -11.65470 -11.51815 -11.47811 -11.07071 -10.93785 -10.90727 -10.81684 -10.48601 -10.18116 -10.09730 -9.96238 -9.73990 -9.59304 -9.16477 -8.85609 -8.54684 -6.97305 -5.82053 -3.16032 2.34323 2.41167 2.73622 3.34495 3.38476 3.43054 3.44062 3.78541 4.39420 4.44183 4.66831 4.68350 4.75531 4.79854 4.85776 4.94563 4.98990 5.08580 5.18787 5.27281 5.28613 5.42875 5.49156 5.56686 5.68016 5.84637 5.89441 5.93778 6.03650 6.10653 6.14664 6.28173 6.34278 6.36393 6.49008 6.58082 6.65185 7.17032 7.26432 7.29464 7.48887 7.71628 7.91518 8.00460 8.33331 8.98212 9.64526 10.50115 11.34701 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.002547 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.124624 B =10992.050448 C =11387.530025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.043 3.957 4 C 0.516 3.484 5 O -0.514 6.514 6 N -0.712 5.712 7 C 0.135 3.865 8 H 0.107 0.893 9 C 0.513 3.487 10 O -0.541 6.541 11 N -0.707 5.707 12 C 0.090 3.910 13 C 0.155 3.845 14 N -0.607 5.607 15 C -0.226 4.226 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.113 3.887 24 C -0.098 4.098 25 C -0.156 4.156 26 C -0.136 4.136 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.410 0.590 33 H 0.399 0.601 34 H 0.112 0.888 35 H 0.030 0.970 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.050 0.950 39 H 0.036 0.964 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.755 -12.827 -2.972 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.301 3.699 5 O -0.388 6.388 6 N -0.367 5.367 7 C 0.026 3.974 8 H 0.125 0.875 9 C 0.297 3.703 10 O -0.418 6.418 11 N -0.357 5.357 12 C -0.015 4.015 13 C 0.029 3.971 14 N -0.333 5.333 15 C -0.353 4.353 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.745 3.255 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.014 4.014 24 C -0.118 4.118 25 C -0.214 4.214 26 C -0.193 4.193 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.247 0.753 33 H 0.233 0.767 34 H 0.130 0.870 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.433 -12.757 -3.053 22.624 hybrid contribution 0.678 0.879 0.237 1.135 sum -17.755 -11.879 -2.816 21.547 Atomic orbital electron populations 1.22845 0.80312 1.03333 1.00198 1.88010 1.19810 1.25119 1.95450 1.22216 0.91504 0.87050 1.02912 1.20138 0.88609 0.84501 0.76614 1.90744 1.74320 1.26341 1.47424 1.45625 1.05628 1.09644 1.75838 1.20977 0.80661 0.97583 0.98179 0.87507 1.20399 0.81735 0.89887 0.78251 1.90688 1.61200 1.31008 1.58942 1.46178 1.20289 1.11539 1.57687 1.23993 0.94128 0.86090 0.97282 1.22714 0.86173 0.98243 0.89989 1.45718 1.41058 1.41506 1.05054 1.18979 1.09305 1.12945 0.94088 0.90024 1.24823 0.99976 1.00047 0.95471 1.69818 1.43846 1.41499 1.01342 0.86086 0.81652 0.80161 0.77642 1.21544 1.21550 1.20527 1.22868 0.89575 0.93588 0.95401 1.21423 0.96576 1.00108 0.93664 1.21951 0.93802 1.02815 1.02808 1.21869 1.00143 0.97324 0.99984 0.89063 0.93750 0.93763 0.90034 0.90079 0.75303 0.76665 0.87032 0.95239 0.90500 0.93498 0.93193 0.94608 0.90346 0.92211 0.91767 0.91315 0.93082 0.93020 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.77 10.24 -55.14 -0.56 -4.33 16 3 C 0.04 0.36 6.42 36.00 0.23 0.59 16 4 C 0.52 5.78 6.19 -10.98 -0.07 5.71 16 5 O -0.51 -7.50 13.62 -14.36 -0.20 -7.69 16 6 N -0.71 -7.56 4.91 -54.93 -0.27 -7.83 16 7 C 0.13 1.58 2.23 -69.08 -0.15 1.43 16 8 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16 9 C 0.51 7.39 6.30 -10.98 -0.07 7.32 16 10 O -0.54 -9.49 15.66 5.56 0.09 -9.41 16 11 N -0.71 -10.16 4.37 -55.34 -0.24 -10.40 16 12 C 0.09 1.66 4.43 -70.14 -0.31 1.35 16 13 C 0.16 3.57 7.33 -2.83 -0.02 3.55 16 14 N -0.61 -15.22 3.70 -177.88 -0.66 -15.88 16 15 C -0.23 -6.25 10.70 -15.06 -0.16 -6.41 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.07 11.39 55.49 0.63 -26.44 16 19 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 C 0.11 2.18 8.69 -2.97 -0.03 2.15 16 24 C -0.10 -1.10 2.67 -90.62 -0.24 -1.35 16 25 C -0.16 -1.73 8.57 37.16 0.32 -1.41 16 26 C -0.14 -1.51 7.70 37.16 0.29 -1.22 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.41 3.97 7.82 -40.82 -0.32 3.65 16 33 H 0.40 4.76 8.61 -40.82 -0.35 4.41 16 34 H 0.11 2.25 7.46 -51.93 -0.39 1.87 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 2.02 7.16 -51.93 -0.37 1.65 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.89 6.91 -51.93 -0.36 0.53 16 44 H 0.05 0.59 5.83 -51.93 -0.30 0.29 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.82 7.39 -51.93 -0.38 0.43 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -34.49 375.06 -7.27 -41.76 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.49 Total: 4.93 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 0.80 Total: 12.73 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.54 Total: -60.55 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.67 Total: -21.43 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.49 -7.27 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692242575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.239 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds