Wall clock time and date at job start Tue Mar 31 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 N 1.46507 * 109.46803 * 175.00213 * 6 4 2 8 8 C 1.34773 * 119.99647 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00340 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99967 * 179.97438 * 8 7 6 11 11 N 1.46497 * 109.47020 * 179.97438 * 10 8 7 12 12 C 1.46092 * 118.72937 * 269.73239 * 11 10 8 13 13 C 1.53218 * 109.82341 * 161.46985 * 12 11 10 14 14 O 1.43248 * 108.50977 * 49.54177 * 13 12 11 15 15 C 1.42967 * 112.98660 * 291.45652 * 14 13 12 16 16 C 1.33873 * 118.72969 * 90.00302 * 11 10 8 17 17 O 1.21280 * 118.83097 * 1.88215 * 16 11 10 18 18 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 19 19 C 1.36933 * 119.99983 * 84.99832 * 18 4 2 20 20 H 1.08002 * 120.00189 * 0.02562 * 19 18 4 21 21 C 1.38812 * 120.00422 * 179.97438 * 19 18 4 22 22 N 1.31623 * 119.99438 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00488 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47306 * 60.00034 * 23 21 19 25 25 H 1.48498 * 109.47382 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47182 * 299.99946 * 23 21 19 27 27 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 28 28 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 31 31 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 33 33 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 34 34 H 1.09008 * 109.47142 * 294.99397 * 6 4 2 35 35 H 1.08990 * 109.47170 * 54.99895 * 6 4 2 36 36 H 0.96994 * 119.99737 * 359.97438 * 7 6 4 37 37 H 1.08994 * 109.46898 * 300.00344 * 10 8 7 38 38 H 1.09000 * 109.46513 * 60.00010 * 10 8 7 39 39 H 1.09004 * 109.39881 * 281.78364 * 12 11 10 40 40 H 1.09000 * 109.39570 * 41.50489 * 12 11 10 41 41 H 1.08997 * 109.82582 * 289.75072 * 13 12 11 42 42 H 1.08999 * 109.66753 * 169.24249 * 13 12 11 43 43 H 1.08994 * 109.41530 * 289.49927 * 15 14 13 44 44 H 1.08999 * 109.35786 * 169.67063 * 15 14 13 45 45 H 0.96997 * 120.00274 * 264.99726 * 18 4 2 46 46 H 0.97001 * 120.00131 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 7 2.1142 -2.8884 2.3805 8 6 1.8053 -4.1846 2.5824 9 8 1.0441 -4.7514 1.8273 10 6 2.4067 -4.9301 3.7459 11 7 1.9173 -6.3109 3.7466 12 6 0.6975 -6.6233 4.4874 13 6 0.1189 -7.9549 3.9979 14 8 1.1688 -8.9294 3.9845 15 6 2.1581 -8.6706 2.9854 16 6 2.6082 -7.2388 3.0729 17 8 3.6338 -6.9129 2.5136 18 7 3.5050 -0.7218 1.2488 19 6 4.1902 0.3528 1.7497 20 1 3.6506 1.2005 2.1454 21 6 5.5783 0.3522 1.7498 22 7 6.2359 -0.6816 1.2689 23 14 6.5130 1.8177 2.4338 24 1 6.1542 2.0111 3.8617 25 1 7.9728 1.5714 2.3187 26 1 6.1549 3.0362 1.6641 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 0.4437 -2.1652 1.3387 35 1 1.8183 -2.6510 0.3177 36 1 2.7233 -2.4351 2.9842 37 1 3.4929 -4.9292 3.6557 38 1 2.1191 -4.4426 4.6774 39 1 0.9276 -6.6936 5.5505 40 1 -0.0351 -5.8320 4.3286 41 1 -0.2825 -7.8359 2.9915 42 1 -0.6737 -8.2803 4.6717 43 1 1.7341 -8.8574 1.9988 44 1 3.0121 -9.3292 3.1434 45 1 3.9897 -1.4833 0.8937 46 1 7.2059 -0.6820 1.2687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698961526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:56 Heat of formation + Delta-G solvation = -101.334286 kcal Electronic energy + Delta-G solvation = -27097.763781 eV Core-core repulsion = 23216.056665 eV Total energy + Delta-G solvation = -3881.707116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91030 -39.20102 -37.81204 -37.23973 -35.39260 -33.84917 -33.12829 -30.76121 -30.37210 -29.46451 -27.92753 -26.30556 -25.80549 -24.13991 -23.59346 -21.88259 -20.36921 -19.43734 -19.11637 -17.89262 -17.60379 -17.12433 -16.89389 -15.96256 -15.65920 -15.63818 -15.19277 -14.72746 -14.65779 -14.29672 -13.98159 -13.68835 -13.47644 -13.43194 -13.36679 -13.22921 -12.78171 -12.36381 -12.05023 -11.97406 -11.85986 -11.64948 -11.53734 -11.05544 -10.95799 -10.82898 -10.76989 -10.65626 -10.31797 -10.13243 -9.99877 -9.91935 -9.58399 -9.54735 -8.95093 -8.79642 -8.64304 -7.04141 -5.81707 -3.11859 2.34644 2.61165 2.87672 3.38890 3.42468 3.44481 3.46038 3.65433 4.11559 4.48277 4.52990 4.71488 4.86779 4.98773 5.01936 5.13442 5.16294 5.30553 5.32562 5.37204 5.41016 5.49541 5.52640 5.61199 5.73520 5.88575 5.97616 6.01429 6.16656 6.22344 6.35076 6.43175 6.47453 6.51767 6.61026 6.66016 6.90475 7.05509 7.17013 7.28543 7.64902 7.85410 7.96642 8.34903 8.51476 9.46741 10.01543 10.37306 11.39685 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003408 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.751869 B = 8213.309437 C = 9487.876546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.171 3.829 5 H 0.053 0.947 6 C 0.115 3.885 7 N -0.709 5.709 8 C 0.497 3.503 9 O -0.551 6.551 10 C 0.089 3.911 11 N -0.587 5.587 12 C 0.084 3.916 13 C 0.044 3.956 14 O -0.373 6.373 15 C 0.053 3.947 16 C 0.491 3.509 17 O -0.532 6.532 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.927 5.927 23 Si 0.903 3.097 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.411 0.589 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.386 0.614 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 -10.900 6.841 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.009 4.009 7 N -0.361 5.361 8 C 0.281 3.719 9 O -0.429 6.429 10 C -0.038 4.038 11 N -0.320 5.320 12 C -0.039 4.039 13 C -0.033 4.033 14 O -0.291 6.291 15 C -0.026 4.026 16 C 0.278 3.722 17 O -0.408 6.408 18 N -0.363 5.363 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.575 5.575 23 Si 0.734 3.266 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.247 0.753 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.133 0.867 43 H 0.110 0.890 44 H 0.148 0.852 45 H 0.220 0.780 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.972 -11.161 6.224 18.935 hybrid contribution 0.941 1.239 0.224 1.572 sum -13.031 -9.923 6.447 17.602 Atomic orbital electron populations 1.21937 0.96912 1.00872 1.00907 1.21736 0.93487 0.97824 1.00117 1.21816 1.04253 0.94594 0.98968 1.20535 0.86461 0.91034 0.95953 0.92910 1.21727 0.97065 0.93254 0.88880 1.45947 1.48415 1.10752 1.30953 1.20942 0.81734 0.82362 0.86834 1.90641 1.36911 1.67831 1.47533 1.21388 1.02530 0.81912 0.97956 1.47001 1.26332 1.07608 1.51075 1.22194 0.86762 0.98664 0.96303 1.23040 0.90235 0.87201 1.02803 1.88163 1.35400 1.49550 1.55977 1.22823 0.93403 0.92410 0.93979 1.20968 0.84134 0.88779 0.78318 1.90799 1.24175 1.81242 1.44600 1.42466 0.98693 1.21253 1.73866 1.19132 0.88758 0.96439 1.32807 0.90997 1.24741 0.96489 0.97641 1.01702 1.69657 1.07062 1.29711 1.51037 0.86346 0.79166 0.82349 0.78755 1.21310 1.21785 1.21290 0.93216 0.93568 0.93130 0.91925 0.89468 0.95011 0.94074 0.91719 0.92026 0.75286 0.86182 0.87447 0.90494 0.89502 0.91372 0.86707 0.89029 0.85165 0.78035 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.84 37.16 0.33 -1.74 16 2 C -0.11 -1.87 2.69 -90.63 -0.24 -2.11 16 3 C -0.14 -2.49 8.26 37.15 0.31 -2.18 16 4 C 0.17 3.10 2.18 -67.93 -0.15 2.95 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C 0.12 1.95 4.73 -4.04 -0.02 1.93 16 7 N -0.71 -11.57 5.39 -60.29 -0.32 -11.90 16 8 C 0.50 8.10 7.89 -10.98 -0.09 8.01 16 9 O -0.55 -10.51 16.43 5.55 0.09 -10.42 16 10 C 0.09 1.16 5.80 -5.19 -0.03 1.13 16 11 N -0.59 -7.42 2.32 -175.67 -0.41 -7.83 16 12 C 0.08 0.73 6.63 -4.15 -0.03 0.70 16 13 C 0.04 0.34 6.91 37.27 0.26 0.60 16 14 O -0.37 -3.64 10.85 -35.23 -0.38 -4.02 16 15 C 0.05 0.56 6.98 35.83 0.25 0.81 16 16 C 0.49 7.07 7.58 -11.56 -0.09 6.98 16 17 O -0.53 -9.95 16.36 5.56 0.09 -9.86 16 18 N -0.72 -16.31 4.44 -53.43 -0.24 -16.55 16 19 C -0.24 -6.03 7.57 -15.06 -0.11 -6.14 16 20 H 0.07 1.76 7.40 -52.49 -0.39 1.37 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 23 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.67 6.54 -51.93 -0.34 0.33 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.02 6.71 -51.92 -0.35 0.67 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.41 6.69 8.14 -40.82 -0.33 6.36 16 37 H 0.12 1.76 7.23 -51.93 -0.38 1.39 16 38 H 0.11 1.01 8.03 -51.93 -0.42 0.60 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.71 8.13 -51.93 -0.42 0.28 16 41 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.39 9.73 7.80 -40.82 -0.32 9.41 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -33.09 373.17 -7.01 -40.10 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.46 Total: 13.96 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 0.29 Total: 10.61 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.25 Total: -62.37 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.20 Total: -24.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.09 -7.01 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698961526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.233 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds