Wall clock time and date at job start Tue Mar 31 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 N 1.46507 * 109.46803 * 175.00213 * 6 4 2 8 8 C 1.34773 * 119.99647 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00340 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99967 * 179.97438 * 8 7 6 11 11 N 1.46497 * 109.47020 * 179.97438 * 10 8 7 12 12 C 1.46092 * 118.72937 * 269.73239 * 11 10 8 13 13 C 1.53218 * 109.82341 * 161.46985 * 12 11 10 14 14 O 1.43248 * 108.50977 * 49.54177 * 13 12 11 15 15 C 1.42967 * 112.98660 * 291.45652 * 14 13 12 16 16 C 1.33873 * 118.72969 * 90.00302 * 11 10 8 17 17 O 1.21280 * 118.83097 * 1.88215 * 16 11 10 18 18 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 19 19 C 1.36933 * 119.99983 * 84.99832 * 18 4 2 20 20 H 1.08002 * 120.00189 * 0.02562 * 19 18 4 21 21 C 1.38812 * 120.00422 * 179.97438 * 19 18 4 22 22 N 1.31623 * 119.99438 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00488 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47306 * 60.00034 * 23 21 19 25 25 H 1.48498 * 109.47382 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47182 * 299.99946 * 23 21 19 27 27 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 28 28 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 31 31 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 33 33 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 34 34 H 1.09008 * 109.47142 * 294.99397 * 6 4 2 35 35 H 1.08990 * 109.47170 * 54.99895 * 6 4 2 36 36 H 0.96994 * 119.99737 * 359.97438 * 7 6 4 37 37 H 1.08994 * 109.46898 * 300.00344 * 10 8 7 38 38 H 1.09000 * 109.46513 * 60.00010 * 10 8 7 39 39 H 1.09004 * 109.39881 * 281.78364 * 12 11 10 40 40 H 1.09000 * 109.39570 * 41.50489 * 12 11 10 41 41 H 1.08997 * 109.82582 * 289.75072 * 13 12 11 42 42 H 1.08999 * 109.66753 * 169.24249 * 13 12 11 43 43 H 1.08994 * 109.41530 * 289.49927 * 15 14 13 44 44 H 1.08999 * 109.35786 * 169.67063 * 15 14 13 45 45 H 0.96997 * 120.00274 * 264.99726 * 18 4 2 46 46 H 0.97001 * 120.00131 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 7 2.1142 -2.8884 2.3805 8 6 1.8053 -4.1846 2.5824 9 8 1.0441 -4.7514 1.8273 10 6 2.4067 -4.9301 3.7459 11 7 1.9173 -6.3109 3.7466 12 6 0.6975 -6.6233 4.4874 13 6 0.1189 -7.9549 3.9979 14 8 1.1688 -8.9294 3.9845 15 6 2.1581 -8.6706 2.9854 16 6 2.6082 -7.2388 3.0729 17 8 3.6338 -6.9129 2.5136 18 7 3.5050 -0.7218 1.2488 19 6 4.1902 0.3528 1.7497 20 1 3.6506 1.2005 2.1454 21 6 5.5783 0.3522 1.7498 22 7 6.2359 -0.6816 1.2689 23 14 6.5130 1.8177 2.4338 24 1 6.1542 2.0111 3.8617 25 1 7.9728 1.5714 2.3187 26 1 6.1549 3.0362 1.6641 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 0.4437 -2.1652 1.3387 35 1 1.8183 -2.6510 0.3177 36 1 2.7233 -2.4351 2.9842 37 1 3.4929 -4.9292 3.6557 38 1 2.1191 -4.4426 4.6774 39 1 0.9276 -6.6936 5.5505 40 1 -0.0351 -5.8320 4.3286 41 1 -0.2825 -7.8359 2.9915 42 1 -0.6737 -8.2803 4.6717 43 1 1.7341 -8.8574 1.9988 44 1 3.0121 -9.3292 3.1434 45 1 3.9897 -1.4833 0.8937 46 1 7.2059 -0.6820 1.2687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698961526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:55 Heat of formation + Delta-G solvation = -126.490266 kcal Electronic energy + Delta-G solvation = -27098.854626 eV Core-core repulsion = 23216.056665 eV Total energy + Delta-G solvation = -3882.797961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92748 -40.48627 -38.82353 -38.67511 -36.39935 -35.27229 -34.91985 -32.25516 -31.44552 -30.62935 -29.25433 -27.53574 -26.98672 -25.47185 -24.83682 -23.35494 -21.69375 -20.78724 -20.15090 -19.25616 -18.77810 -18.35778 -18.13420 -17.05633 -16.92824 -16.75045 -16.50919 -16.06235 -15.74597 -15.63245 -15.27277 -15.12569 -14.88960 -14.73389 -14.46095 -14.30660 -13.97558 -13.85506 -13.44936 -13.06917 -12.89420 -12.80597 -12.79786 -12.70383 -12.47109 -12.30593 -12.28817 -12.03607 -11.78184 -11.62689 -11.45708 -11.29570 -11.20127 -10.82474 -10.55119 -10.03512 -9.87902 -8.96747 -7.86991 -5.15070 1.27312 1.50571 1.51748 1.57451 1.57785 1.66022 2.37653 2.60116 2.75583 3.27318 3.45909 3.73124 3.81508 3.86615 3.92532 4.02631 4.12767 4.19414 4.28896 4.30772 4.36101 4.39658 4.45129 4.48792 4.62663 4.71597 4.75002 4.81371 4.91828 4.96899 5.05232 5.09499 5.15018 5.25525 5.31836 5.51268 5.60087 5.64384 5.73538 5.76800 6.21724 6.31919 6.54014 6.89120 7.19126 7.39708 8.11460 8.36051 9.35632 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003408 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.751869 B = 8213.309437 C = 9487.876546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.173 3.827 5 H 0.062 0.938 6 C 0.125 3.875 7 N -0.708 5.708 8 C 0.495 3.505 9 O -0.580 6.580 10 C 0.091 3.909 11 N -0.587 5.587 12 C 0.077 3.923 13 C 0.042 3.958 14 O -0.375 6.375 15 C 0.061 3.939 16 C 0.478 3.522 17 O -0.589 6.589 18 N -0.729 5.729 19 C -0.216 4.216 20 H 0.082 0.918 21 C -0.073 4.073 22 N -0.970 5.970 23 Si 0.960 3.040 24 H -0.276 1.276 25 H -0.306 1.306 26 H -0.282 1.282 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.412 0.588 37 H 0.101 0.899 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.151 0.849 43 H 0.101 0.899 44 H 0.144 0.856 45 H 0.370 0.630 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.841 -10.584 8.461 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.080 0.920 6 C 0.000 4.000 7 N -0.360 5.360 8 C 0.281 3.719 9 O -0.461 6.461 10 C -0.036 4.036 11 N -0.319 5.319 12 C -0.045 4.045 13 C -0.035 4.035 14 O -0.293 6.293 15 C -0.018 4.018 16 C 0.267 3.733 17 O -0.470 6.470 18 N -0.368 5.368 19 C -0.347 4.347 20 H 0.100 0.900 21 C -0.265 4.265 22 N -0.621 5.621 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.233 1.233 26 H -0.209 1.209 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.248 0.752 37 H 0.119 0.881 38 H 0.168 0.832 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.169 0.831 43 H 0.119 0.881 44 H 0.162 0.838 45 H 0.201 0.799 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.842 -10.818 7.887 21.515 hybrid contribution 1.647 1.161 -0.293 2.036 sum -15.195 -9.657 7.594 19.540 Atomic orbital electron populations 1.21839 0.93770 1.01813 1.02278 1.21636 0.96055 0.96817 0.98406 1.21728 1.01605 0.95461 1.00390 1.20694 0.83844 0.92147 0.96864 0.92004 1.21590 0.98049 0.92091 0.88235 1.45956 1.48310 1.11041 1.30654 1.21483 0.81107 0.82091 0.87197 1.90620 1.38427 1.68284 1.48743 1.21422 1.01227 0.82536 0.98405 1.47245 1.27203 1.06946 1.50479 1.22536 0.85323 0.99471 0.97147 1.23273 0.90310 0.86487 1.03397 1.88170 1.35506 1.50017 1.55621 1.22799 0.94275 0.90008 0.94763 1.21776 0.83531 0.90526 0.77485 1.90766 1.26674 1.82397 1.47120 1.42604 1.00607 1.20090 1.73523 1.19451 0.88765 0.96559 1.29963 0.90025 1.25397 0.97662 0.99871 1.03554 1.69824 1.06380 1.31863 1.54016 0.85405 0.77107 0.79795 0.78618 1.20193 1.23302 1.20881 0.91887 0.92184 0.92432 0.93661 0.93370 0.93139 0.93139 0.89702 0.94344 0.75206 0.88094 0.83206 0.87967 0.88602 0.92146 0.83098 0.88111 0.83803 0.79857 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.84 71.98 0.64 -2.81 16 2 C -0.11 -3.51 2.69 -10.80 -0.03 -3.53 16 3 C -0.13 -4.60 8.26 71.98 0.59 -4.01 16 4 C 0.17 6.12 2.18 44.99 0.10 6.22 16 5 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 6 C 0.12 4.14 4.73 86.38 0.41 4.55 16 7 N -0.71 -22.86 5.39 -463.04 -2.49 -25.36 16 8 C 0.50 15.96 7.89 87.66 0.69 16.66 16 9 O -0.58 -22.00 16.43 -3.04 -0.05 -22.05 16 10 C 0.09 2.32 5.80 85.64 0.50 2.82 16 11 N -0.59 -14.23 2.32 -828.58 -1.92 -16.15 16 12 C 0.08 1.12 6.63 86.53 0.57 1.70 16 13 C 0.04 0.53 6.91 72.05 0.50 1.03 16 14 O -0.38 -6.50 10.85 -148.98 -1.62 -8.12 16 15 C 0.06 1.22 6.98 71.12 0.50 1.72 16 16 C 0.48 13.81 7.58 87.69 0.66 14.47 16 17 O -0.59 -22.97 16.36 -3.03 -0.05 -23.02 16 18 N -0.73 -33.23 4.44 -322.94 -1.43 -34.66 16 19 C -0.22 -10.79 7.57 84.03 0.64 -10.15 16 20 H 0.08 3.88 7.40 -2.91 -0.02 3.86 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 22 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 23 Si 0.96 44.50 29.55 68.60 2.03 46.53 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.31 -14.79 7.11 99.48 0.71 -14.09 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.36 6.54 -2.39 -0.02 1.34 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 2.03 6.01 -2.39 -0.01 2.01 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.49 6.71 -2.38 -0.02 2.48 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 13.27 8.14 -92.71 -0.75 12.52 16 37 H 0.10 3.05 7.23 -2.39 -0.02 3.03 16 38 H 0.15 2.47 8.03 -2.39 -0.02 2.45 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 1.27 8.13 -2.39 -0.02 1.25 16 41 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 42 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.37 19.25 7.80 -92.71 -0.72 18.53 16 46 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -74.14 373.17 0.49 -73.65 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: -0.48 Total: 41.67 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 6.23 Total: 25.17 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -5.57 Total: -133.83 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -1.72 Total: -53.19 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -74.14 0.49 -73.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698961526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.840 kcal (2) G-P(sol) polarization free energy of solvation -74.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds