Wall clock time and date at job start Tue Mar 31 2020 04:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42898 * 109.46985 * 2 1 4 4 C 1.42900 * 113.99689 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47190 * 30.00267 * 4 3 2 6 6 C 1.52996 * 109.47264 * 270.00288 * 4 3 2 7 7 C 1.50700 * 109.47109 * 150.00225 * 4 3 2 8 8 O 1.21284 * 119.99913 * 4.99823 * 7 4 3 9 9 N 1.34777 * 120.00153 * 185.00193 * 7 4 3 10 10 C 1.46498 * 120.00101 * 179.97438 * 9 7 4 11 11 C 1.53002 * 109.47326 * 174.95542 * 10 9 7 12 12 N 1.46902 * 115.54672 * 272.74714 * 11 10 9 13 13 C 1.46907 * 111.00101 * 294.30950 * 12 11 10 14 14 C 1.50691 * 109.47330 * 177.90432 * 13 12 11 15 15 O 1.21296 * 120.00403 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00195 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00246 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00141 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00055 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99971 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99981 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46693 * 90.00289 * 21 19 17 23 23 H 1.48497 * 109.47000 * 209.99932 * 21 19 17 24 24 H 1.48495 * 109.47115 * 330.00513 * 21 19 17 25 25 C 1.52995 * 117.50309 * 127.07469 * 11 10 9 26 26 C 1.52997 * 117.50200 * 58.41205 * 11 10 9 27 27 H 1.08999 * 109.46897 * 59.99953 * 1 2 3 28 28 H 1.08999 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46761 * 300.00334 * 1 2 3 30 30 H 1.08995 * 109.46877 * 240.00130 * 2 1 3 31 31 H 1.08999 * 109.46897 * 120.00047 * 2 1 3 32 32 H 1.09001 * 109.46897 * 299.99663 * 6 4 3 33 33 H 1.08996 * 109.47669 * 60.00207 * 6 4 3 34 34 H 1.09009 * 109.47431 * 180.02562 * 6 4 3 35 35 H 0.97000 * 120.00017 * 0.02562 * 9 7 4 36 36 H 1.09000 * 109.47119 * 294.95202 * 10 9 7 37 37 H 1.09003 * 109.47421 * 54.95303 * 10 9 7 38 38 H 1.00897 * 111.00076 * 170.35864 * 12 11 10 39 39 H 1.09004 * 109.46379 * 297.90431 * 13 12 11 40 40 H 1.09001 * 109.46901 * 57.89530 * 13 12 11 41 41 H 0.97007 * 119.99560 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00044 * 179.97438 * 20 19 17 43 43 H 1.08998 * 117.49575 * 359.97438 * 25 11 10 44 44 H 1.08997 * 117.49803 * 145.01861 * 25 11 10 45 45 H 1.08997 * 117.50089 * 214.98398 * 26 11 10 46 46 H 1.09000 * 117.49766 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9387 1.5005 1.4432 7 6 3.8349 2.7263 -0.7098 8 8 2.9865 3.5046 -1.0912 9 7 5.1388 2.9937 -0.9213 10 6 5.5314 4.2243 -1.6124 11 6 7.0566 4.3458 -1.6108 12 7 7.6386 5.0020 -0.4323 13 6 7.2428 6.4152 -0.3674 14 6 7.8149 7.0404 0.8785 15 8 8.4861 6.3743 1.6382 16 7 7.5810 8.3399 1.1490 17 6 8.1011 8.9086 2.2828 18 1 8.6980 8.3152 2.9596 19 6 7.8594 10.2482 2.5618 20 7 8.3583 10.7934 3.6484 21 14 6.8263 11.2744 1.3916 22 1 5.3979 11.1906 1.7891 23 1 7.2735 12.6893 1.4475 24 1 6.9862 10.7589 0.0082 25 6 7.7491 4.5675 -2.9569 26 6 7.8564 3.2115 -2.2548 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5061 2.3591 1.9568 33 1 3.6467 0.5847 1.9571 34 1 5.0254 1.5870 1.4437 35 1 5.8172 2.3710 -0.6166 36 1 5.1704 4.1947 -2.6404 37 1 5.0980 5.0831 -1.0997 38 1 8.6431 4.9072 -0.4249 39 1 7.6226 6.9394 -1.2444 40 1 6.1554 6.4872 -0.3438 41 1 7.0439 8.8726 0.5416 42 1 8.1899 11.7287 3.8430 43 1 7.1182 4.6264 -3.8437 44 1 8.6368 5.1999 -2.9681 45 1 8.8145 2.9525 -1.8043 46 1 7.2960 2.3785 -2.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699645544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:47 Heat of formation + Delta-G solvation = -87.200017 kcal Electronic energy + Delta-G solvation = -26080.573276 eV Core-core repulsion = 22199.479068 eV Total energy + Delta-G solvation = -3881.094208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24087 -39.10964 -38.13295 -37.65355 -34.38154 -34.03255 -32.77298 -32.60161 -31.63606 -30.43069 -27.42755 -26.75091 -24.40221 -23.91743 -22.99732 -22.63224 -20.45533 -19.88280 -19.39178 -18.36261 -17.51758 -17.29982 -16.53268 -16.11685 -15.79614 -15.52702 -15.46768 -14.90551 -14.79679 -14.39066 -14.03307 -13.88930 -13.62751 -13.41589 -13.08967 -12.93121 -12.65663 -12.60416 -12.49695 -12.36888 -12.23459 -12.15480 -11.77172 -11.72346 -11.65747 -11.35122 -11.20954 -10.95692 -10.58781 -10.43304 -10.16157 -9.97620 -9.61359 -9.57426 -9.16302 -8.59209 -8.21587 -8.16720 -6.31442 -3.82951 2.49004 2.63600 3.03542 3.08838 3.16396 3.40247 3.69927 3.72358 3.98483 4.10836 4.36621 4.43623 4.54653 4.60660 4.65718 4.75293 4.80711 4.81398 4.91250 5.01651 5.21054 5.21296 5.36063 5.40007 5.44020 5.46279 5.47232 5.59134 5.59371 5.65149 5.70708 5.79272 5.82689 5.85629 5.90818 5.93871 6.27501 6.80114 6.96957 7.37374 7.44178 7.57261 8.12081 8.13405 8.58784 8.94157 9.41775 9.81174 10.81522 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.002837 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.102258 B = 9867.344477 C =10896.541099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.074 3.926 5 H 0.084 0.916 6 C -0.172 4.172 7 C 0.513 3.487 8 O -0.522 6.522 9 N -0.716 5.716 10 C 0.167 3.833 11 C 0.037 3.963 12 N -0.626 5.626 13 C 0.047 3.953 14 C 0.450 3.550 15 O -0.566 6.566 16 N -0.589 5.589 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.206 4.206 26 C -0.166 4.166 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.355 0.645 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.371 0.629 42 H 0.274 0.726 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 -21.131 -13.809 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.012 3.988 5 H 0.102 0.898 6 C -0.229 4.229 7 C 0.298 3.702 8 O -0.397 6.397 9 N -0.370 5.370 10 C 0.044 3.956 11 C -0.056 4.056 12 N -0.257 5.257 13 C -0.086 4.086 14 C 0.236 3.764 15 O -0.448 6.448 16 N -0.228 5.228 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.246 4.246 26 C -0.204 4.204 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.176 0.824 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.204 0.796 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.458 -20.841 -12.959 26.301 hybrid contribution 0.365 0.890 -1.347 1.655 sum -9.093 -19.951 -14.306 26.180 Atomic orbital electron populations 1.21731 0.93432 1.02165 1.03512 1.22587 0.95997 0.83596 1.00015 1.88073 1.18411 1.26215 1.94943 1.21857 0.83721 0.96247 0.96954 0.89841 1.22244 1.02115 1.03859 0.94722 1.20364 0.82547 0.87798 0.79512 1.90730 1.50237 1.48785 1.49958 1.45806 1.06935 1.23995 1.60234 1.20717 0.90187 0.87695 0.97039 1.21868 0.92939 1.02204 0.88598 1.59832 1.16522 1.13225 1.36081 1.21729 1.01547 0.88342 0.96949 1.19639 0.85851 0.82602 0.88342 1.90564 1.42268 1.61530 1.50417 1.42199 1.48117 1.09345 1.23162 1.19421 1.30237 0.94679 0.99052 0.86276 1.25043 0.97746 0.96619 0.96721 1.69621 1.44153 1.13656 1.24613 0.86678 0.81179 0.80846 0.80744 1.19502 1.20162 1.19490 1.23667 1.03788 1.00028 0.97151 1.23157 1.01992 0.92320 1.02917 0.91684 0.91058 0.91644 0.93356 0.93147 0.90787 0.91307 0.90511 0.76177 0.91028 0.90123 0.82413 0.93309 0.89258 0.79645 0.91590 0.88367 0.88356 0.88028 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.05 0.43 6.47 37.16 0.24 0.67 16 3 O -0.36 -4.26 9.53 -55.09 -0.52 -4.79 16 4 C 0.07 0.73 3.13 -27.89 -0.09 0.64 16 5 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 6 C -0.17 -1.53 9.48 37.16 0.35 -1.17 16 7 C 0.51 6.58 7.18 -10.99 -0.08 6.50 16 8 O -0.52 -9.10 16.50 -14.31 -0.24 -9.33 16 9 N -0.72 -7.57 5.43 -60.29 -0.33 -7.89 16 10 C 0.17 1.92 5.75 -4.04 -0.02 1.89 16 11 C 0.04 0.40 1.90 -131.60 -0.25 0.15 16 12 N -0.63 -9.02 6.26 -101.22 -0.63 -9.65 16 13 C 0.05 0.76 6.03 -4.98 -0.03 0.73 16 14 C 0.45 10.15 7.82 -10.99 -0.09 10.06 16 15 O -0.57 -15.00 15.83 5.54 0.09 -14.92 16 16 N -0.59 -14.11 5.09 -10.97 -0.06 -14.16 16 17 C -0.31 -8.67 10.16 -14.93 -0.15 -8.83 16 18 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 20 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 21 Si 0.88 19.61 27.74 -169.99 -4.71 14.90 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 25 C -0.21 -1.85 10.07 -26.70 -0.27 -2.12 16 26 C -0.17 -1.36 9.56 -26.70 -0.26 -1.61 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 34 H 0.08 0.60 7.93 -51.92 -0.41 0.19 16 35 H 0.40 3.36 7.95 -40.82 -0.32 3.04 16 36 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 37 H 0.08 1.11 6.46 -51.93 -0.34 0.78 16 38 H 0.36 5.22 8.38 -39.29 -0.33 4.89 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.38 6.55 -51.93 -0.34 1.04 16 41 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.10 0.78 8.04 -51.93 -0.42 0.37 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -35.88 385.79 -7.55 -43.43 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -7.38 Total: 14.39 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.35 Total: 7.28 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.24 Total: -56.78 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.67 Total: -29.03 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.88 -7.55 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699645544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.773 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds