Wall clock time and date at job start Tue Mar 31 2020 04:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42898 * 109.46985 * 2 1 4 4 C 1.42900 * 113.99689 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47190 * 30.00267 * 4 3 2 6 6 C 1.52996 * 109.47264 * 270.00288 * 4 3 2 7 7 C 1.50700 * 109.47109 * 150.00225 * 4 3 2 8 8 O 1.21284 * 119.99913 * 4.99823 * 7 4 3 9 9 N 1.34777 * 120.00153 * 185.00193 * 7 4 3 10 10 C 1.46498 * 120.00101 * 179.97438 * 9 7 4 11 11 C 1.53002 * 109.47326 * 174.95542 * 10 9 7 12 12 N 1.46902 * 115.54672 * 272.74714 * 11 10 9 13 13 C 1.46907 * 111.00101 * 294.30950 * 12 11 10 14 14 C 1.50691 * 109.47330 * 177.90432 * 13 12 11 15 15 O 1.21296 * 120.00403 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00195 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00246 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00141 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00055 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99971 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99981 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46693 * 90.00289 * 21 19 17 23 23 H 1.48497 * 109.47000 * 209.99932 * 21 19 17 24 24 H 1.48495 * 109.47115 * 330.00513 * 21 19 17 25 25 C 1.52995 * 117.50309 * 127.07469 * 11 10 9 26 26 C 1.52997 * 117.50200 * 58.41205 * 11 10 9 27 27 H 1.08999 * 109.46897 * 59.99953 * 1 2 3 28 28 H 1.08999 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46761 * 300.00334 * 1 2 3 30 30 H 1.08995 * 109.46877 * 240.00130 * 2 1 3 31 31 H 1.08999 * 109.46897 * 120.00047 * 2 1 3 32 32 H 1.09001 * 109.46897 * 299.99663 * 6 4 3 33 33 H 1.08996 * 109.47669 * 60.00207 * 6 4 3 34 34 H 1.09009 * 109.47431 * 180.02562 * 6 4 3 35 35 H 0.97000 * 120.00017 * 0.02562 * 9 7 4 36 36 H 1.09000 * 109.47119 * 294.95202 * 10 9 7 37 37 H 1.09003 * 109.47421 * 54.95303 * 10 9 7 38 38 H 1.00897 * 111.00076 * 170.35864 * 12 11 10 39 39 H 1.09004 * 109.46379 * 297.90431 * 13 12 11 40 40 H 1.09001 * 109.46901 * 57.89530 * 13 12 11 41 41 H 0.97007 * 119.99560 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00044 * 179.97438 * 20 19 17 43 43 H 1.08998 * 117.49575 * 359.97438 * 25 11 10 44 44 H 1.08997 * 117.49803 * 145.01861 * 25 11 10 45 45 H 1.08997 * 117.50089 * 214.98398 * 26 11 10 46 46 H 1.09000 * 117.49766 * 359.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.9387 1.5005 1.4432 7 6 3.8349 2.7263 -0.7098 8 8 2.9865 3.5046 -1.0912 9 7 5.1388 2.9937 -0.9213 10 6 5.5314 4.2243 -1.6124 11 6 7.0566 4.3458 -1.6108 12 7 7.6386 5.0020 -0.4323 13 6 7.2428 6.4152 -0.3674 14 6 7.8149 7.0404 0.8785 15 8 8.4861 6.3743 1.6382 16 7 7.5810 8.3399 1.1490 17 6 8.1011 8.9086 2.2828 18 1 8.6980 8.3152 2.9596 19 6 7.8594 10.2482 2.5618 20 7 8.3583 10.7934 3.6484 21 14 6.8263 11.2744 1.3916 22 1 5.3979 11.1906 1.7891 23 1 7.2735 12.6893 1.4475 24 1 6.9862 10.7589 0.0082 25 6 7.7491 4.5675 -2.9569 26 6 7.8564 3.2115 -2.2548 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5061 2.3591 1.9568 33 1 3.6467 0.5847 1.9571 34 1 5.0254 1.5870 1.4437 35 1 5.8172 2.3710 -0.6166 36 1 5.1704 4.1947 -2.6404 37 1 5.0980 5.0831 -1.0997 38 1 8.6431 4.9072 -0.4249 39 1 7.6226 6.9394 -1.2444 40 1 6.1554 6.4872 -0.3438 41 1 7.0439 8.8726 0.5416 42 1 8.1899 11.7287 3.8430 43 1 7.1182 4.6264 -3.8437 44 1 8.6368 5.1999 -2.9681 45 1 8.8145 2.9525 -1.8043 46 1 7.2960 2.3785 -2.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699645544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:47 Heat of formation + Delta-G solvation = -116.687565 kcal Electronic energy + Delta-G solvation = -26081.851952 eV Core-core repulsion = 22199.479068 eV Total energy + Delta-G solvation = -3882.372884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17762 -40.43701 -39.44070 -38.56794 -36.08240 -35.32344 -34.02199 -33.66340 -33.28329 -31.10796 -28.49405 -28.17919 -25.69377 -25.16218 -23.61676 -23.33421 -21.38178 -21.30228 -20.76871 -20.29284 -18.42360 -18.08152 -17.84262 -17.17516 -16.82412 -16.73038 -16.58131 -16.38691 -15.77614 -15.70391 -15.38680 -15.03934 -14.72867 -14.36609 -14.26863 -14.18348 -14.12718 -13.77596 -13.54495 -13.33042 -13.19938 -13.02939 -12.91389 -12.86555 -12.43591 -12.39246 -12.29436 -12.04077 -11.99977 -11.85310 -11.53974 -11.23790 -10.96304 -10.50036 -10.41079 -10.27124 -10.10687 -9.27851 -8.43555 -6.04158 1.28073 1.33686 1.41757 1.54640 1.83261 1.91674 2.20476 2.49711 2.82931 3.04144 3.12497 3.31587 3.59127 3.65972 3.77794 3.91792 4.00014 4.03336 4.11738 4.20926 4.33352 4.39305 4.45467 4.49725 4.55443 4.59503 4.66486 4.76725 4.78226 4.81403 4.89131 5.01227 5.02526 5.19604 5.22963 5.27390 5.38673 5.50073 5.86068 5.98031 6.13817 6.32508 6.56066 6.57194 6.85219 7.21693 7.36747 7.92184 8.73850 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.002837 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.102258 B = 9867.344477 C =10896.541099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.394 6.394 4 C 0.076 3.924 5 H 0.122 0.878 6 C -0.167 4.167 7 C 0.507 3.493 8 O -0.577 6.577 9 N -0.702 5.702 10 C 0.168 3.832 11 C 0.021 3.979 12 N -0.641 5.641 13 C 0.062 3.938 14 C 0.450 3.550 15 O -0.611 6.611 16 N -0.592 5.592 17 C -0.327 4.327 18 H 0.058 0.942 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.961 3.039 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.232 1.232 25 C -0.196 4.196 26 C -0.145 4.145 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.416 0.584 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.352 0.648 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.388 0.612 42 H 0.279 0.721 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 -22.623 -16.925 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.314 6.314 4 C 0.015 3.985 5 H 0.140 0.860 6 C -0.225 4.225 7 C 0.293 3.707 8 O -0.456 6.456 9 N -0.356 5.356 10 C 0.044 3.956 11 C -0.071 4.071 12 N -0.272 5.272 13 C -0.070 4.070 14 C 0.238 3.762 15 O -0.495 6.495 16 N -0.233 5.233 17 C -0.457 4.457 18 H 0.076 0.924 19 C -0.212 4.212 20 N -0.573 5.573 21 Si 0.781 3.219 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.155 1.155 25 C -0.236 4.236 26 C -0.183 4.183 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.253 0.747 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.224 0.776 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.193 -22.382 -16.096 29.393 hybrid contribution 0.678 1.215 -0.313 1.426 sum -9.515 -21.167 -16.409 28.423 Atomic orbital electron populations 1.21778 0.93371 1.03450 1.02321 1.22838 0.96192 0.82240 1.01631 1.88042 1.19484 1.28697 1.95150 1.21966 0.83392 0.95871 0.97300 0.86041 1.22232 1.02562 1.03619 0.94090 1.21021 0.82542 0.88293 0.78836 1.90697 1.51737 1.50740 1.52449 1.45754 1.06686 1.23835 1.59304 1.20672 0.90611 0.87026 0.97258 1.21756 0.92412 1.04502 0.88446 1.59766 1.16469 1.12026 1.38932 1.21567 1.01743 0.89629 0.94015 1.20878 0.84049 0.81824 0.89461 1.90539 1.43951 1.62522 1.52494 1.42054 1.48703 1.10193 1.22369 1.19005 1.31188 0.95109 1.00369 0.92408 1.26077 0.98839 0.97548 0.98775 1.69793 1.45893 1.14473 1.27110 0.85417 0.78701 0.78246 0.79522 1.18547 1.19729 1.15500 1.23712 1.03286 1.00387 0.96186 1.23280 1.01612 0.92344 1.01056 0.92986 0.88513 0.92726 0.91712 0.91369 0.93752 0.89158 0.89386 0.74689 0.89882 0.92816 0.82738 0.90321 0.88038 0.77619 0.91108 0.86884 0.88516 0.87677 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.65 6.47 71.98 0.47 1.12 16 3 O -0.39 -9.07 9.53 -129.99 -1.24 -10.31 16 4 C 0.08 1.38 3.13 29.85 0.09 1.47 16 5 H 0.12 1.24 7.79 -2.38 -0.02 1.22 16 6 C -0.17 -2.74 9.48 71.98 0.68 -2.06 16 7 C 0.51 12.60 7.18 87.66 0.63 13.22 16 8 O -0.58 -20.36 16.50 15.95 0.26 -20.10 16 9 N -0.70 -13.63 5.43 -463.05 -2.51 -16.15 16 10 C 0.17 3.55 5.75 86.38 0.50 4.05 16 11 C 0.02 0.40 1.90 3.53 0.01 0.41 16 12 N -0.64 -17.52 6.26 -474.14 -2.97 -20.49 16 13 C 0.06 1.94 6.03 85.55 0.52 2.45 16 14 C 0.45 20.44 7.82 87.65 0.69 21.13 16 15 O -0.61 -33.56 15.83 -3.08 -0.05 -33.61 16 16 N -0.59 -28.43 5.09 -306.99 -1.56 -29.99 16 17 C -0.33 -19.40 10.16 84.04 0.85 -18.54 16 18 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 19 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 20 N -0.93 -56.70 13.96 21.66 0.30 -56.39 16 21 Si 0.96 39.76 27.74 68.60 1.90 41.66 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 25 C -0.20 -2.81 10.07 30.62 0.31 -2.50 16 26 C -0.15 -1.85 9.56 30.62 0.29 -1.56 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 31 H 0.07 0.69 7.87 -2.39 -0.02 0.68 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.08 7.87 -2.39 -0.02 1.06 16 34 H 0.09 1.21 7.93 -2.38 -0.02 1.19 16 35 H 0.42 5.87 7.95 -92.71 -0.74 5.13 16 36 H 0.08 1.58 7.89 -2.39 -0.02 1.56 16 37 H 0.05 1.44 6.46 -2.39 -0.02 1.43 16 38 H 0.35 9.95 8.38 -89.70 -0.75 9.19 16 39 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.10 2.97 6.55 -2.39 -0.02 2.95 16 41 H 0.39 15.71 5.76 -92.70 -0.53 15.17 16 42 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.11 1.33 8.04 -2.39 -0.02 1.31 16 44 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 45 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -85.18 385.79 -0.70 -85.87 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: -1.07 Total: 41.89 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.24 Total: 17.62 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -6.74 Total: -123.03 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -1.02 Total: -64.02 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.90 Total: 41.66 kcal Total: -85.18 -0.70 -85.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699645544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.816 kcal (2) G-P(sol) polarization free energy of solvation -85.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds