Wall clock time and date at job start Tue Mar 31 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00141 * 2 1 4 4 H 1.09002 * 109.46786 * 29.99862 * 3 2 1 5 5 C 1.53006 * 109.47040 * 270.00179 * 3 2 1 6 6 C 1.50700 * 109.47052 * 149.99920 * 3 2 1 7 7 O 1.21279 * 120.00243 * 8.07121 * 6 3 2 8 8 N 1.34775 * 119.99685 * 188.07020 * 6 3 2 9 9 C 1.47429 * 125.64956 * 4.18401 * 8 6 3 10 10 C 1.54913 * 104.83175 * 204.15078 * 9 8 6 11 11 C 1.55163 * 101.58298 * 322.99259 * 10 9 8 12 12 C 1.47023 * 125.64801 * 184.21169 * 8 6 3 13 13 H 1.09004 * 110.00577 * 59.43062 * 12 8 6 14 14 C 1.53000 * 109.88146 * 298.33829 * 12 8 6 15 15 N 1.46902 * 109.47089 * 176.83008 * 14 12 8 16 16 C 1.46895 * 111.00012 * 184.88052 * 15 14 12 17 17 C 1.50701 * 109.47174 * 180.02562 * 16 15 14 18 18 O 1.21294 * 119.99672 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00115 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99975 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00169 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00133 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00328 * 180.02562 * 22 20 19 24 24 Si 1.86811 * 119.99785 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46819 * 89.99694 * 24 22 20 26 26 H 1.48501 * 109.47043 * 209.99744 * 24 22 20 27 27 H 1.48504 * 109.46846 * 329.99671 * 24 22 20 28 28 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47234 * 300.00530 * 1 2 3 30 30 H 1.09009 * 109.47264 * 59.99981 * 1 2 3 31 31 H 1.08998 * 109.46931 * 185.72747 * 5 3 2 32 32 H 1.08995 * 109.47024 * 305.72701 * 5 3 2 33 33 H 1.08996 * 109.46855 * 65.72658 * 5 3 2 34 34 H 1.08995 * 110.36545 * 85.31710 * 9 8 6 35 35 H 1.08999 * 110.36925 * 322.99179 * 9 8 6 36 36 H 1.08999 * 111.00318 * 204.92023 * 10 9 8 37 37 H 1.08998 * 111.03391 * 81.08124 * 10 9 8 38 38 H 1.09001 * 110.71777 * 277.14057 * 11 10 9 39 39 H 1.08998 * 110.87260 * 153.93534 * 11 10 9 40 40 H 1.08999 * 109.46924 * 296.82853 * 14 12 8 41 41 H 1.08995 * 109.46918 * 56.83060 * 14 12 8 42 42 H 1.00902 * 111.00223 * 308.83421 * 15 14 12 43 43 H 1.09008 * 109.46910 * 300.00000 * 16 15 14 44 44 H 1.08996 * 109.47267 * 59.99891 * 16 15 14 45 45 H 0.96996 * 119.99839 * 359.97438 * 19 17 16 46 46 H 0.97002 * 120.00037 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4426 6 6 3.3386 1.2639 0.7104 7 8 3.8160 0.1994 1.0419 8 7 3.9962 2.4097 0.9774 9 6 3.4948 3.7702 0.7108 10 6 4.7674 4.6456 0.5919 11 6 5.6847 4.0097 1.6698 12 6 5.3325 2.5098 1.5821 13 1 6.0632 1.9932 0.9597 14 6 5.3167 1.8962 2.9836 15 7 6.6719 1.9323 3.5493 16 6 6.7188 1.2471 4.8478 17 6 8.1213 1.3052 5.3962 18 8 8.9959 1.8622 4.7668 19 7 8.4038 0.7383 6.5858 20 6 9.6798 0.7907 7.0843 21 1 10.4586 1.2866 6.5240 22 6 9.9710 0.2066 8.3110 23 7 11.1940 0.2573 8.7892 24 14 8.6238 -0.6506 9.2806 25 1 8.5691 -2.0828 8.8920 26 1 8.9139 -0.5425 10.7330 27 1 7.3176 -0.0078 8.9876 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 2.7527 2.7210 -1.4443 32 1 2.7989 1.0259 -1.9851 33 1 1.2491 1.8992 -1.9258 34 1 2.8736 4.1143 1.5377 35 1 2.9315 3.7910 -0.2222 36 1 4.5490 5.6867 0.8295 37 1 5.2111 4.5581 -0.3998 38 1 5.4489 4.4041 2.6582 39 1 6.7355 4.1737 1.4312 40 1 4.6412 2.4658 3.6219 41 1 4.9753 0.8628 2.9240 42 1 7.3424 1.5368 2.9074 43 1 6.0369 1.7379 5.5424 44 1 6.4209 0.2065 4.7205 45 1 7.7043 0.2932 7.0892 46 1 11.3973 -0.1508 9.6454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699746479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:42 Heat of formation + Delta-G solvation = -99.904479 kcal Electronic energy + Delta-G solvation = -26365.214325 eV Core-core repulsion = 22483.569210 eV Total energy + Delta-G solvation = -3881.645115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71280 -38.71148 -38.29761 -37.23474 -35.35152 -33.85233 -32.77297 -31.62521 -31.21010 -30.09693 -27.25890 -26.91842 -25.32362 -24.39407 -23.06370 -22.42203 -21.14916 -19.64613 -19.20702 -18.27667 -17.69308 -17.13327 -16.62060 -16.02421 -15.76096 -15.52409 -15.19943 -14.93769 -14.73062 -14.40162 -14.08096 -13.79210 -13.73377 -13.46357 -13.31598 -13.11592 -12.97621 -12.72713 -12.57103 -12.37277 -12.19333 -12.00309 -11.74077 -11.65858 -11.60113 -11.36365 -11.16101 -10.90869 -10.89061 -10.55399 -10.37671 -9.93728 -9.75668 -9.52899 -8.94597 -8.51494 -8.14928 -8.06783 -6.27271 -3.78383 2.34322 2.36838 3.06859 3.11114 3.18537 3.46777 3.79682 4.01673 4.13975 4.20645 4.31075 4.39177 4.47766 4.57034 4.66570 4.84034 4.86589 4.93018 4.93758 4.95955 5.12790 5.19699 5.20339 5.25624 5.27399 5.34231 5.48818 5.58042 5.64817 5.70426 5.75217 5.80664 5.88144 5.92406 5.99337 6.12917 6.19239 6.61955 7.10667 7.23304 7.61091 7.63149 7.93205 8.18695 8.64245 8.99046 9.46889 9.87521 10.85894 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002581 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.543167 B =10847.201417 C =11907.921922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.074 3.926 4 H 0.084 0.916 5 C -0.175 4.175 6 C 0.528 3.472 7 O -0.512 6.512 8 N -0.614 5.614 9 C 0.090 3.910 10 C -0.136 4.136 11 C -0.114 4.114 12 C 0.141 3.859 13 H 0.077 0.923 14 C 0.047 3.953 15 N -0.663 5.663 16 C 0.049 3.951 17 C 0.452 3.548 18 O -0.565 6.565 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.350 0.650 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.371 0.629 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.914 7.129 -19.105 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.013 3.987 4 H 0.102 0.898 5 C -0.232 4.232 6 C 0.314 3.686 7 O -0.386 6.386 8 N -0.351 5.351 9 C -0.033 4.033 10 C -0.174 4.174 11 C -0.152 4.152 12 C 0.038 3.962 13 H 0.095 0.905 14 C -0.083 4.083 15 N -0.296 5.296 16 C -0.084 4.084 17 C 0.238 3.762 18 O -0.447 6.447 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.169 0.831 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.203 0.797 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.920 7.220 -18.919 31.340 hybrid contribution -1.349 -1.412 0.749 2.091 sum -25.269 5.809 -18.171 31.661 Atomic orbital electron populations 1.22891 0.80519 1.03389 0.99992 1.88070 1.19715 1.25037 1.94920 1.21870 0.93294 0.86837 0.96712 0.89832 1.22333 1.03375 1.02532 0.94962 1.20051 0.86172 0.82910 0.79418 1.90749 1.67657 1.28928 1.51216 1.48490 1.18856 1.05575 1.62139 1.22568 0.97554 0.81860 1.01294 1.22829 0.95056 0.99239 1.00293 1.22608 1.00748 0.92144 0.99705 1.21565 0.83289 0.97597 0.93740 0.90486 1.22316 0.91675 1.00242 0.94090 1.60078 1.05079 1.59868 1.04565 1.21692 0.97140 0.97124 0.92432 1.19697 0.89459 0.83988 0.83055 1.90555 1.48238 1.46459 1.59407 1.42208 1.10854 1.51428 1.18627 1.19432 0.85620 1.34734 1.03458 0.86274 1.25035 0.96522 0.97823 0.96816 1.69623 1.18341 1.44349 1.19944 0.86673 0.81634 0.80493 0.80615 1.19643 1.20194 1.19472 0.89027 0.93801 0.93823 0.90449 0.90815 0.91182 0.91061 0.90187 0.89637 0.90573 0.89707 0.89279 0.91181 0.93650 0.83070 0.89593 0.93638 0.79680 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.92 9.89 -55.01 -0.54 -4.47 16 3 C 0.07 0.65 2.48 -27.88 -0.07 0.58 16 4 H 0.08 0.52 7.67 -51.93 -0.40 0.12 16 5 C -0.17 -1.09 9.30 37.16 0.35 -0.75 16 6 C 0.53 6.44 7.01 -10.99 -0.08 6.36 16 7 O -0.51 -8.71 15.36 -14.22 -0.22 -8.93 16 8 N -0.61 -6.12 3.06 -163.01 -0.50 -6.62 16 9 C 0.09 0.55 6.47 -2.52 -0.02 0.53 16 10 C -0.14 -0.82 7.09 -24.58 -0.17 -1.00 16 11 C -0.11 -1.05 6.25 -24.89 -0.16 -1.21 16 12 C 0.14 1.61 3.04 -66.95 -0.20 1.41 16 13 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.05 0.65 5.08 -3.82 -0.02 0.63 16 15 N -0.66 -10.86 5.91 -115.06 -0.68 -11.54 16 16 C 0.05 0.88 6.16 -4.98 -0.03 0.85 16 17 C 0.45 10.66 7.82 -10.98 -0.09 10.57 16 18 O -0.56 -15.48 15.78 5.55 0.09 -15.39 16 19 N -0.59 -14.61 5.09 -10.96 -0.06 -14.66 16 20 C -0.30 -8.80 10.16 -14.94 -0.15 -8.95 16 21 H 0.12 3.92 7.39 -52.48 -0.39 3.54 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -26.24 13.96 55.50 0.77 -25.46 16 24 Si 0.88 19.92 27.74 -169.99 -4.71 15.21 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -5.60 6.52 56.52 0.37 -5.23 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 30 H 0.04 0.20 8.01 -51.92 -0.42 -0.22 16 31 H 0.08 0.37 5.47 -51.93 -0.28 0.09 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.31 8.01 -51.93 -0.42 -0.11 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.32 5.16 -51.93 -0.27 0.06 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.05 0.72 6.61 -51.93 -0.34 0.38 16 42 H 0.35 6.02 8.36 -39.29 -0.33 5.69 16 43 H 0.09 1.39 8.14 -51.92 -0.42 0.96 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.37 8.10 5.76 -40.82 -0.24 7.86 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -36.65 372.66 -7.17 -43.82 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.29 Total: 11.08 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 0.36 Total: 11.35 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.46 Total: -58.28 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.68 Total: -28.79 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.71 Total: 15.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.65 -7.17 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.087 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds