Wall clock time and date at job start Tue Mar 31 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00141 * 2 1 4 4 H 1.09002 * 109.46786 * 29.99862 * 3 2 1 5 5 C 1.53006 * 109.47040 * 270.00179 * 3 2 1 6 6 C 1.50700 * 109.47052 * 149.99920 * 3 2 1 7 7 O 1.21279 * 120.00243 * 8.07121 * 6 3 2 8 8 N 1.34775 * 119.99685 * 188.07020 * 6 3 2 9 9 C 1.47429 * 125.64956 * 4.18401 * 8 6 3 10 10 C 1.54913 * 104.83175 * 204.15078 * 9 8 6 11 11 C 1.55163 * 101.58298 * 322.99259 * 10 9 8 12 12 C 1.47023 * 125.64801 * 184.21169 * 8 6 3 13 13 H 1.09004 * 110.00577 * 59.43062 * 12 8 6 14 14 C 1.53000 * 109.88146 * 298.33829 * 12 8 6 15 15 N 1.46902 * 109.47089 * 176.83008 * 14 12 8 16 16 C 1.46895 * 111.00012 * 184.88052 * 15 14 12 17 17 C 1.50701 * 109.47174 * 180.02562 * 16 15 14 18 18 O 1.21294 * 119.99672 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00115 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99975 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00169 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00133 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00328 * 180.02562 * 22 20 19 24 24 Si 1.86811 * 119.99785 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46819 * 89.99694 * 24 22 20 26 26 H 1.48501 * 109.47043 * 209.99744 * 24 22 20 27 27 H 1.48504 * 109.46846 * 329.99671 * 24 22 20 28 28 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47234 * 300.00530 * 1 2 3 30 30 H 1.09009 * 109.47264 * 59.99981 * 1 2 3 31 31 H 1.08998 * 109.46931 * 185.72747 * 5 3 2 32 32 H 1.08995 * 109.47024 * 305.72701 * 5 3 2 33 33 H 1.08996 * 109.46855 * 65.72658 * 5 3 2 34 34 H 1.08995 * 110.36545 * 85.31710 * 9 8 6 35 35 H 1.08999 * 110.36925 * 322.99179 * 9 8 6 36 36 H 1.08999 * 111.00318 * 204.92023 * 10 9 8 37 37 H 1.08998 * 111.03391 * 81.08124 * 10 9 8 38 38 H 1.09001 * 110.71777 * 277.14057 * 11 10 9 39 39 H 1.08998 * 110.87260 * 153.93534 * 11 10 9 40 40 H 1.08999 * 109.46924 * 296.82853 * 14 12 8 41 41 H 1.08995 * 109.46918 * 56.83060 * 14 12 8 42 42 H 1.00902 * 111.00223 * 308.83421 * 15 14 12 43 43 H 1.09008 * 109.46910 * 300.00000 * 16 15 14 44 44 H 1.08996 * 109.47267 * 59.99891 * 16 15 14 45 45 H 0.96996 * 119.99839 * 359.97438 * 19 17 16 46 46 H 0.97002 * 120.00037 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4426 6 6 3.3386 1.2639 0.7104 7 8 3.8160 0.1994 1.0419 8 7 3.9962 2.4097 0.9774 9 6 3.4948 3.7702 0.7108 10 6 4.7674 4.6456 0.5919 11 6 5.6847 4.0097 1.6698 12 6 5.3325 2.5098 1.5821 13 1 6.0632 1.9932 0.9597 14 6 5.3167 1.8962 2.9836 15 7 6.6719 1.9323 3.5493 16 6 6.7188 1.2471 4.8478 17 6 8.1213 1.3052 5.3962 18 8 8.9959 1.8622 4.7668 19 7 8.4038 0.7383 6.5858 20 6 9.6798 0.7907 7.0843 21 1 10.4586 1.2866 6.5240 22 6 9.9710 0.2066 8.3110 23 7 11.1940 0.2573 8.7892 24 14 8.6238 -0.6506 9.2806 25 1 8.5691 -2.0828 8.8920 26 1 8.9139 -0.5425 10.7330 27 1 7.3176 -0.0078 8.9876 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 2.7527 2.7210 -1.4443 32 1 2.7989 1.0259 -1.9851 33 1 1.2491 1.8992 -1.9258 34 1 2.8736 4.1143 1.5377 35 1 2.9315 3.7910 -0.2222 36 1 4.5490 5.6867 0.8295 37 1 5.2111 4.5581 -0.3998 38 1 5.4489 4.4041 2.6582 39 1 6.7355 4.1737 1.4312 40 1 4.6412 2.4658 3.6219 41 1 4.9753 0.8628 2.9240 42 1 7.3424 1.5368 2.9074 43 1 6.0369 1.7379 5.5424 44 1 6.4209 0.2065 4.7205 45 1 7.7043 0.2932 7.0892 46 1 11.3973 -0.1508 9.6454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699746479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:42 Heat of formation + Delta-G solvation = -129.556773 kcal Electronic energy + Delta-G solvation = -26366.500145 eV Core-core repulsion = 22483.569210 eV Total energy + Delta-G solvation = -3882.930935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53101 -40.33957 -39.30387 -38.10868 -36.70256 -35.87058 -33.78859 -33.51572 -31.89400 -31.08121 -28.38534 -27.72609 -26.38729 -25.68924 -24.28458 -23.17332 -21.89261 -21.36703 -20.54050 -20.02171 -18.49570 -18.01406 -17.64895 -17.23939 -17.07091 -16.69543 -16.33306 -16.17504 -15.79938 -15.43738 -15.33381 -15.06166 -14.92058 -14.59644 -14.36668 -14.22409 -14.07558 -13.81669 -13.60512 -13.28982 -13.27156 -13.21025 -12.92091 -12.75234 -12.68114 -12.43788 -12.15876 -12.00367 -11.91761 -11.82657 -11.55471 -11.54464 -11.05702 -10.55234 -10.49372 -10.27757 -9.75278 -9.44309 -8.43557 -6.04436 1.28481 1.33302 1.42152 1.48007 1.62001 1.90629 2.20641 2.65642 2.93345 3.12276 3.32393 3.46073 3.66963 3.78013 3.85698 3.88358 4.01757 4.09941 4.19195 4.27720 4.36367 4.42891 4.43515 4.46517 4.53187 4.54534 4.67616 4.73808 4.76645 4.85386 4.87636 5.04290 5.04503 5.17375 5.21000 5.33744 5.42904 5.49748 5.81459 5.94881 6.07252 6.22507 6.46224 6.56439 6.84488 7.07654 7.35859 7.91237 8.73902 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002581 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.543167 B =10847.201417 C =11907.921922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.077 3.923 4 H 0.116 0.884 5 C -0.168 4.168 6 C 0.517 3.483 7 O -0.575 6.575 8 N -0.608 5.608 9 C 0.085 3.915 10 C -0.125 4.125 11 C -0.112 4.112 12 C 0.139 3.861 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.669 5.669 16 C 0.062 3.938 17 C 0.452 3.548 18 O -0.610 6.610 19 N -0.591 5.591 20 C -0.329 4.329 21 H 0.058 0.942 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.963 3.037 25 H -0.259 1.259 26 H -0.272 1.272 27 H -0.233 1.233 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.342 0.658 43 H 0.115 0.885 44 H 0.065 0.935 45 H 0.389 0.611 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.320 8.180 -19.358 36.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.016 3.984 4 H 0.133 0.867 5 C -0.226 4.226 6 C 0.306 3.694 7 O -0.453 6.453 8 N -0.343 5.343 9 C -0.036 4.036 10 C -0.163 4.163 11 C -0.150 4.150 12 C 0.035 3.965 13 H 0.074 0.926 14 C -0.072 4.072 15 N -0.301 5.301 16 C -0.071 4.071 17 C 0.239 3.761 18 O -0.494 6.494 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.076 0.924 22 C -0.212 4.212 23 N -0.572 5.572 24 Si 0.783 3.217 25 H -0.184 1.184 26 H -0.196 1.196 27 H -0.157 1.157 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.160 0.840 43 H 0.133 0.867 44 H 0.083 0.917 45 H 0.224 0.776 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.371 8.326 -19.198 35.254 hybrid contribution 0.113 -1.673 0.749 1.837 sum -28.258 6.653 -18.449 34.397 Atomic orbital electron populations 1.23091 0.78495 1.04124 1.01609 1.88023 1.22077 1.26621 1.95201 1.22020 0.91591 0.86879 0.97936 0.86659 1.22325 1.04706 1.02433 0.93088 1.20905 0.87290 0.82421 0.78791 1.90712 1.69428 1.31258 1.53908 1.48577 1.18018 1.06866 1.60862 1.22904 0.97903 0.79290 1.03480 1.22840 0.93957 1.00249 0.99259 1.22542 1.00956 0.90688 1.00828 1.21486 0.84143 0.98775 0.92092 0.92598 1.22277 0.89984 0.99346 0.95615 1.60114 1.06384 1.59507 1.04059 1.21616 0.93140 0.98929 0.93408 1.20790 0.91364 0.81851 0.82066 1.90533 1.50457 1.47972 1.60478 1.42033 1.09730 1.52141 1.19317 1.19020 0.86490 1.36096 1.04204 0.92426 1.26091 0.99789 0.97931 0.97427 1.69795 1.21329 1.45316 1.20799 0.85387 0.78811 0.79307 0.78178 1.18381 1.19643 1.15671 0.88947 0.92727 0.91522 0.88725 0.93054 0.88607 0.89297 0.87325 0.87213 0.90036 0.90132 0.90414 0.89949 0.95863 0.84023 0.86703 0.91745 0.77553 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.47 16 2 O -0.40 -8.33 9.89 -130.07 -1.29 -9.62 16 3 C 0.08 1.18 2.48 29.85 0.07 1.25 16 4 H 0.12 0.98 7.67 -2.39 -0.02 0.97 16 5 C -0.17 -1.64 9.30 71.98 0.67 -0.97 16 6 C 0.52 12.28 7.01 87.66 0.61 12.89 16 7 O -0.57 -20.26 15.36 15.88 0.24 -20.01 16 8 N -0.61 -11.19 3.06 -788.04 -2.42 -13.61 16 9 C 0.08 0.72 6.47 86.86 0.56 1.28 16 10 C -0.13 -1.12 7.09 31.99 0.23 -0.89 16 11 C -0.11 -1.93 6.25 31.79 0.20 -1.73 16 12 C 0.14 3.14 3.04 45.34 0.14 3.27 16 13 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 14 C 0.06 1.56 5.08 86.30 0.44 2.00 16 15 N -0.67 -21.89 5.91 -517.94 -3.06 -24.96 16 16 C 0.06 2.13 6.16 85.56 0.53 2.66 16 17 C 0.45 21.53 7.82 87.66 0.69 22.22 16 18 O -0.61 -34.92 15.78 -3.07 -0.05 -34.97 16 19 N -0.59 -29.21 5.09 -306.98 -1.56 -30.77 16 20 C -0.33 -19.82 10.16 84.04 0.85 -18.97 16 21 H 0.06 4.10 7.39 -2.91 -0.02 4.08 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.93 -57.12 13.96 21.66 0.30 -56.82 16 24 Si 0.96 40.15 27.74 68.60 1.90 42.05 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.23 -8.31 6.52 99.48 0.65 -7.67 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.45 8.08 -2.39 -0.02 0.43 16 30 H 0.07 0.39 8.01 -2.38 -0.02 0.37 16 31 H 0.09 0.55 5.47 -2.39 -0.01 0.54 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.46 8.01 -2.39 -0.02 0.44 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.11 0.34 5.16 -2.39 -0.01 0.33 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 1.47 7.80 -2.39 -0.02 1.45 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.01 8.07 -2.39 -0.02 1.99 16 41 H 0.02 0.75 6.61 -2.39 -0.02 0.73 16 42 H 0.34 12.19 8.36 -89.69 -0.75 11.44 16 43 H 0.12 3.37 8.14 -2.38 -0.02 3.35 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.39 16.16 5.76 -92.71 -0.53 15.62 16 46 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -87.72 372.66 0.41 -87.31 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -0.34 Total: 37.21 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 6.68 Total: 24.19 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.74 Total: -126.16 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -1.09 Total: -64.60 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.90 Total: 42.05 kcal Total: -87.72 0.41 -87.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699746479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.244 kcal (2) G-P(sol) polarization free energy of solvation -87.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds