Wall clock time and date at job start Tue Mar 31 2020 04:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47145 * 2 1 4 4 C 1.42904 * 114.00003 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46498 * 30.00731 * 4 3 2 6 6 C 1.52995 * 109.47483 * 270.00548 * 4 3 2 7 7 C 1.50695 * 109.46850 * 149.99960 * 4 3 2 8 8 O 1.21281 * 120.00381 * 5.00601 * 7 4 3 9 9 N 1.34783 * 119.99792 * 185.00569 * 7 4 3 10 10 C 1.46500 * 120.00057 * 180.02562 * 9 7 4 11 11 H 1.09008 * 112.90649 * 336.24898 * 10 9 7 12 12 C 1.53955 * 113.53746 * 107.49846 * 10 9 7 13 13 C 1.53787 * 87.01765 * 89.19380 * 12 10 9 14 14 H 1.09003 * 113.61136 * 270.77384 * 13 12 10 15 15 N 1.46896 * 113.61914 * 139.95422 * 13 12 10 16 16 C 1.46899 * 111.00338 * 105.85791 * 15 13 12 17 17 C 1.50698 * 109.46987 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47425 * 90.00231 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00087 * 24 22 20 27 27 H 1.48505 * 109.47256 * 330.00093 * 24 22 20 28 28 C 1.53773 * 113.61783 * 204.99978 * 10 9 7 29 29 H 1.09004 * 109.47072 * 60.00118 * 1 2 3 30 30 H 1.08997 * 109.47651 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47419 * 300.00351 * 1 2 3 32 32 H 1.09004 * 109.46862 * 240.00017 * 2 1 3 33 33 H 1.09001 * 109.46673 * 120.00193 * 2 1 3 34 34 H 1.08995 * 109.46993 * 59.99778 * 6 4 3 35 35 H 1.09002 * 109.47199 * 179.97438 * 6 4 3 36 36 H 1.08999 * 109.46674 * 299.99749 * 6 4 3 37 37 H 0.96995 * 120.00093 * 359.97438 * 9 7 4 38 38 H 1.08995 * 113.67299 * 334.66599 * 12 10 9 39 39 H 1.09004 * 113.61179 * 203.70624 * 12 10 9 40 40 H 1.00900 * 110.99693 * 341.90318 * 15 13 12 41 41 H 1.09003 * 109.46477 * 60.00383 * 16 15 13 42 42 H 1.08993 * 109.47002 * 300.00709 * 16 15 13 43 43 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 44 44 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 45 45 H 1.08999 * 113.62023 * 156.33281 * 28 10 9 46 46 H 1.09002 * 113.68873 * 25.43676 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5131 6 6 3.9388 1.5004 1.4432 7 6 3.8347 2.7262 -0.7098 8 8 2.9864 3.5046 -1.0912 9 7 5.1387 2.9936 -0.9214 10 6 5.5314 4.2248 -1.6116 11 1 4.7426 4.6235 -2.2497 12 6 6.1644 5.2758 -0.6816 13 6 7.5180 4.6122 -0.9854 14 1 7.7703 3.8019 -0.3013 15 7 8.6166 5.5708 -1.1640 16 6 9.5090 5.5723 0.0029 17 6 10.6213 6.5651 -0.2166 18 8 10.6660 7.2084 -1.2439 19 7 11.5658 6.7387 0.7290 20 6 12.5810 7.6378 0.5268 21 1 12.6212 8.2101 -0.3882 22 6 13.5580 7.8127 1.4992 23 7 13.5093 7.1160 2.6124 24 14 14.9407 9.0382 1.2242 25 1 14.5350 10.3678 1.7464 26 1 16.1595 8.5775 1.9365 27 1 15.2269 9.1436 -0.2292 28 6 6.8990 4.1311 -2.3084 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.6466 0.5846 1.9570 35 1 5.0254 1.5860 1.4436 36 1 3.5061 2.3590 1.9568 37 1 5.8172 2.3713 -0.6161 38 1 5.8558 5.1815 0.3595 39 1 6.0843 6.2959 -1.0572 40 1 8.2617 6.4971 -1.3489 41 1 9.9322 4.5769 0.1378 42 1 8.9436 5.8503 0.8923 43 1 11.5299 6.2245 1.5507 44 1 14.1911 7.2383 3.2914 45 1 7.0201 4.8376 -3.1295 46 1 7.1836 3.1144 -2.5794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752614615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:55 Heat of formation + Delta-G solvation = -99.971849 kcal Electronic energy + Delta-G solvation = -25388.292956 eV Core-core repulsion = 21506.644920 eV Total energy + Delta-G solvation = -3881.648036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63370 -39.22181 -38.17425 -37.66576 -34.62844 -33.88790 -33.13438 -32.05684 -31.19876 -30.36174 -26.93500 -25.80548 -25.22756 -24.24288 -23.20244 -22.73658 -21.01482 -19.78058 -19.14203 -17.90248 -17.65182 -17.40595 -16.30233 -16.20194 -15.94451 -15.46859 -15.20103 -14.79881 -14.69814 -14.49527 -14.07086 -13.78148 -13.71894 -13.59795 -13.12569 -12.91104 -12.79830 -12.68933 -12.55665 -12.40944 -12.18678 -11.84461 -11.78798 -11.60196 -11.50843 -11.42840 -11.06962 -10.84677 -10.49756 -10.39894 -10.32342 -10.22164 -9.78040 -9.51955 -9.29580 -8.46243 -8.03469 -7.96116 -6.42834 -3.83633 2.30890 2.47750 3.17286 3.26034 3.32102 3.47373 3.89723 4.08973 4.23757 4.30322 4.40950 4.42386 4.49182 4.57506 4.65952 4.78180 4.80987 4.90939 4.93066 5.01461 5.15610 5.21996 5.25869 5.30711 5.45822 5.47863 5.63535 5.64153 5.70429 5.72419 5.74781 5.77666 5.85438 5.95505 6.00007 6.23856 6.36438 6.65649 7.19596 7.24357 7.54304 7.64452 7.94370 8.05404 8.60133 9.16909 9.53192 10.04624 10.74892 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.033222 B = 0.001880 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.622654 B =14890.135623 C =15479.329110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.086 0.914 6 C -0.171 4.171 7 C 0.516 3.484 8 O -0.517 6.517 9 N -0.710 5.710 10 C 0.120 3.880 11 H 0.104 0.896 12 C -0.181 4.181 13 C 0.068 3.932 14 H 0.094 0.906 15 N -0.657 5.657 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.132 4.132 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.353 0.647 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.102 0.898 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.486 -17.113 -1.615 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.010 3.990 5 H 0.104 0.896 6 C -0.229 4.229 7 C 0.301 3.699 8 O -0.391 6.391 9 N -0.363 5.363 10 C 0.014 3.986 11 H 0.122 0.878 12 C -0.222 4.222 13 C -0.043 4.043 14 H 0.112 0.888 15 N -0.288 5.288 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.171 4.171 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.173 0.827 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.674 -16.368 -2.782 26.516 hybrid contribution 0.756 0.133 1.415 1.610 sum -19.918 -16.234 -1.367 25.733 Atomic orbital electron populations 1.21731 0.93339 1.02275 1.03497 1.22606 0.96063 0.83431 1.00121 1.88069 1.18231 1.26411 1.94935 1.21871 0.83954 0.96370 0.96807 0.89597 1.22240 1.01766 1.03959 0.94921 1.20396 0.82580 0.87604 0.79341 1.90732 1.50136 1.48760 1.49479 1.45625 1.06953 1.23593 1.60098 1.21809 0.97268 0.84785 0.94721 0.87791 1.24243 0.97879 0.99464 1.00594 1.23101 0.88362 0.96044 0.96796 0.88837 1.60013 1.18147 1.12309 1.38326 1.21706 0.94485 1.00219 0.91835 1.19837 0.85137 0.86970 0.85536 1.90525 1.77397 1.50685 1.28155 1.41869 1.23100 1.37434 1.17639 1.19716 1.01878 1.16925 1.04422 0.87908 1.25262 0.99115 0.98430 0.95131 1.69612 1.36030 1.41144 1.07565 0.85849 0.79800 0.79934 0.78663 1.20426 1.20928 1.19393 1.23459 0.92741 1.02529 0.98342 0.91629 0.90964 0.91692 0.93204 0.93125 0.91111 0.90788 0.90931 0.76477 0.91192 0.88767 0.82654 0.89702 0.93846 0.77483 0.91885 0.88004 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.51 16 2 C 0.05 0.36 6.47 37.16 0.24 0.60 16 3 O -0.36 -3.64 9.53 -55.09 -0.52 -4.17 16 4 C 0.07 0.57 3.13 -27.89 -0.09 0.48 16 5 H 0.09 0.45 7.79 -51.93 -0.40 0.05 16 6 C -0.17 -1.05 9.48 37.16 0.35 -0.69 16 7 C 0.52 5.56 7.18 -10.99 -0.08 5.48 16 8 O -0.52 -8.04 16.11 -14.30 -0.23 -8.27 16 9 N -0.71 -5.98 5.22 -52.93 -0.28 -6.26 16 10 C 0.12 1.18 4.33 -67.03 -0.29 0.89 16 11 H 0.10 1.18 7.47 -51.92 -0.39 0.79 16 12 C -0.18 -1.91 7.51 -25.82 -0.19 -2.10 16 13 C 0.07 0.76 4.04 -66.90 -0.27 0.49 16 14 H 0.09 0.92 7.88 -51.93 -0.41 0.51 16 15 N -0.66 -10.09 6.24 -107.13 -0.67 -10.76 16 16 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 17 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 18 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 19 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C -0.13 -1.28 7.63 -25.92 -0.20 -1.48 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.05 0.25 7.87 -51.93 -0.41 -0.16 16 34 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 35 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 2.28 8.48 -40.82 -0.35 1.93 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.02 7.83 -51.93 -0.41 0.61 16 40 H 0.35 5.69 7.91 -39.29 -0.31 5.37 16 41 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -34.81 386.88 -8.19 -42.99 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.55 Total: 12.13 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.50 Total: 6.18 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.28 Total: -54.96 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.67 Total: -28.14 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.81 -8.19 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752614615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.977 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds