Wall clock time and date at job start Tue Mar 31 2020 04:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47145 * 2 1 4 4 C 1.42904 * 114.00003 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46498 * 30.00731 * 4 3 2 6 6 C 1.52995 * 109.47483 * 270.00548 * 4 3 2 7 7 C 1.50695 * 109.46850 * 149.99960 * 4 3 2 8 8 O 1.21281 * 120.00381 * 5.00601 * 7 4 3 9 9 N 1.34783 * 119.99792 * 185.00569 * 7 4 3 10 10 C 1.46500 * 120.00057 * 180.02562 * 9 7 4 11 11 H 1.09008 * 112.90649 * 336.24898 * 10 9 7 12 12 C 1.53955 * 113.53746 * 107.49846 * 10 9 7 13 13 C 1.53787 * 87.01765 * 89.19380 * 12 10 9 14 14 H 1.09003 * 113.61136 * 270.77384 * 13 12 10 15 15 N 1.46896 * 113.61914 * 139.95422 * 13 12 10 16 16 C 1.46899 * 111.00338 * 105.85791 * 15 13 12 17 17 C 1.50698 * 109.46987 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47425 * 90.00231 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00087 * 24 22 20 27 27 H 1.48505 * 109.47256 * 330.00093 * 24 22 20 28 28 C 1.53773 * 113.61783 * 204.99978 * 10 9 7 29 29 H 1.09004 * 109.47072 * 60.00118 * 1 2 3 30 30 H 1.08997 * 109.47651 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47419 * 300.00351 * 1 2 3 32 32 H 1.09004 * 109.46862 * 240.00017 * 2 1 3 33 33 H 1.09001 * 109.46673 * 120.00193 * 2 1 3 34 34 H 1.08995 * 109.46993 * 59.99778 * 6 4 3 35 35 H 1.09002 * 109.47199 * 179.97438 * 6 4 3 36 36 H 1.08999 * 109.46674 * 299.99749 * 6 4 3 37 37 H 0.96995 * 120.00093 * 359.97438 * 9 7 4 38 38 H 1.08995 * 113.67299 * 334.66599 * 12 10 9 39 39 H 1.09004 * 113.61179 * 203.70624 * 12 10 9 40 40 H 1.00900 * 110.99693 * 341.90318 * 15 13 12 41 41 H 1.09003 * 109.46477 * 60.00383 * 16 15 13 42 42 H 1.08993 * 109.47002 * 300.00709 * 16 15 13 43 43 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 44 44 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 45 45 H 1.08999 * 113.62023 * 156.33281 * 28 10 9 46 46 H 1.09002 * 113.68873 * 25.43676 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5131 6 6 3.9388 1.5004 1.4432 7 6 3.8347 2.7262 -0.7098 8 8 2.9864 3.5046 -1.0912 9 7 5.1387 2.9936 -0.9214 10 6 5.5314 4.2248 -1.6116 11 1 4.7426 4.6235 -2.2497 12 6 6.1644 5.2758 -0.6816 13 6 7.5180 4.6122 -0.9854 14 1 7.7703 3.8019 -0.3013 15 7 8.6166 5.5708 -1.1640 16 6 9.5090 5.5723 0.0029 17 6 10.6213 6.5651 -0.2166 18 8 10.6660 7.2084 -1.2439 19 7 11.5658 6.7387 0.7290 20 6 12.5810 7.6378 0.5268 21 1 12.6212 8.2101 -0.3882 22 6 13.5580 7.8127 1.4992 23 7 13.5093 7.1160 2.6124 24 14 14.9407 9.0382 1.2242 25 1 14.5350 10.3678 1.7464 26 1 16.1595 8.5775 1.9365 27 1 15.2269 9.1436 -0.2292 28 6 6.8990 4.1311 -2.3084 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.6466 0.5846 1.9570 35 1 5.0254 1.5860 1.4436 36 1 3.5061 2.3590 1.9568 37 1 5.8172 2.3713 -0.6161 38 1 5.8558 5.1815 0.3595 39 1 6.0843 6.2959 -1.0572 40 1 8.2617 6.4971 -1.3489 41 1 9.9322 4.5769 0.1378 42 1 8.9436 5.8503 0.8923 43 1 11.5299 6.2245 1.5507 44 1 14.1911 7.2383 3.2914 45 1 7.0201 4.8376 -3.1295 46 1 7.1836 3.1144 -2.5794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752614615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:54 Heat of formation + Delta-G solvation = -127.092273 kcal Electronic energy + Delta-G solvation = -25389.468986 eV Core-core repulsion = 21506.644920 eV Total energy + Delta-G solvation = -3882.824066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46319 -40.28577 -39.68447 -38.51119 -36.12153 -35.43852 -34.02560 -33.24695 -32.73778 -30.91801 -28.44476 -26.64426 -26.35214 -25.52307 -23.92933 -23.52197 -21.78522 -21.14892 -20.47357 -19.87827 -18.40292 -18.05369 -17.75159 -16.94208 -16.87865 -16.68335 -16.35677 -16.06203 -15.95552 -15.76420 -15.46473 -15.17467 -14.41833 -14.30596 -14.22842 -14.14865 -13.52851 -13.47848 -13.47293 -13.36506 -13.21228 -13.10005 -12.88288 -12.82918 -12.60542 -12.41003 -12.29949 -12.11766 -12.02444 -11.75997 -11.50380 -11.37131 -11.00257 -10.48162 -10.32384 -10.11927 -10.00780 -9.22405 -8.46379 -5.94964 1.38445 1.42483 1.50938 1.55042 1.80143 2.06465 2.29861 2.90925 2.96412 3.21119 3.45007 3.59588 3.62716 3.74240 3.91334 3.97312 4.02959 4.08273 4.20291 4.32735 4.33879 4.49363 4.52934 4.57021 4.61029 4.61820 4.77641 4.81246 4.85855 4.89180 4.96479 5.01946 5.04034 5.13286 5.20494 5.26929 5.41467 5.52656 5.94267 6.12397 6.17694 6.40920 6.53747 6.61054 7.13376 7.19989 7.57299 8.12855 8.70890 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.033222 B = 0.001880 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.622654 B =14890.135623 C =15479.329110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.072 3.928 5 H 0.119 0.881 6 C -0.166 4.166 7 C 0.511 3.489 8 O -0.575 6.575 9 N -0.693 5.693 10 C 0.125 3.875 11 H 0.086 0.914 12 C -0.178 4.178 13 C 0.070 3.930 14 H 0.116 0.884 15 N -0.671 5.671 16 C 0.065 3.935 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.121 4.121 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.418 0.582 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.345 0.655 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.093 0.907 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.002 -19.229 -0.729 27.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.314 6.314 4 C 0.011 3.989 5 H 0.137 0.863 6 C -0.224 4.224 7 C 0.298 3.702 8 O -0.453 6.453 9 N -0.346 5.346 10 C 0.019 3.981 11 H 0.104 0.896 12 C -0.219 4.219 13 C -0.040 4.040 14 H 0.134 0.866 15 N -0.302 5.302 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.160 4.160 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.256 0.744 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.165 0.835 41 H 0.126 0.874 42 H 0.083 0.917 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.172 -18.540 -1.865 27.461 hybrid contribution 0.549 0.765 1.108 1.454 sum -19.623 -17.775 -0.757 26.487 Atomic orbital electron populations 1.21775 0.93418 1.03420 1.02334 1.22823 0.96152 0.82239 1.01608 1.88036 1.19563 1.28626 1.95177 1.22023 0.83436 0.95609 0.97807 0.86348 1.22241 1.02834 1.03879 0.93443 1.21075 0.82503 0.88067 0.78547 1.90707 1.51736 1.50813 1.52022 1.45482 1.06868 1.23211 1.59076 1.21631 0.96776 0.85236 0.94491 0.89630 1.24191 0.97704 0.99347 1.00638 1.23265 0.86986 0.95630 0.98150 0.86568 1.60048 1.19628 1.12684 1.37826 1.21583 0.92757 0.99052 0.93289 1.20987 0.85587 0.86916 0.84196 1.90494 1.78484 1.52447 1.29756 1.41936 1.23315 1.37455 1.18332 1.19672 1.03940 1.18552 1.04346 0.90415 1.26017 1.00757 0.99790 0.94611 1.69666 1.36752 1.41718 1.07890 0.84937 0.77242 0.77915 0.78297 1.19716 1.19486 1.19855 1.23367 0.91909 1.03289 0.97446 0.93148 0.88646 0.92500 0.92040 0.91127 0.89365 0.88741 0.93121 0.74407 0.91190 0.89536 0.83532 0.87370 0.91689 0.76921 0.91301 0.88895 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.54 6.47 71.98 0.47 1.01 16 3 O -0.39 -7.71 9.53 -129.99 -1.24 -8.95 16 4 C 0.07 1.01 3.13 29.84 0.09 1.10 16 5 H 0.12 0.84 7.79 -2.39 -0.02 0.82 16 6 C -0.17 -1.62 9.48 71.98 0.68 -0.94 16 7 C 0.51 10.56 7.18 87.65 0.63 11.19 16 8 O -0.57 -18.30 16.11 15.96 0.26 -18.05 16 9 N -0.69 -10.29 5.22 -439.76 -2.30 -12.59 16 10 C 0.13 2.32 4.33 45.57 0.20 2.52 16 11 H 0.09 1.97 7.47 -2.38 -0.02 1.96 16 12 C -0.18 -3.55 7.51 31.18 0.23 -3.31 16 13 C 0.07 1.38 4.04 45.45 0.18 1.57 16 14 H 0.12 1.81 7.88 -2.39 -0.02 1.80 16 15 N -0.67 -19.65 6.24 -492.85 -3.07 -22.72 16 16 C 0.07 2.11 6.02 85.56 0.52 2.62 16 17 C 0.44 20.37 7.82 87.66 0.69 21.06 16 18 O -0.63 -34.49 15.78 -3.07 -0.05 -34.54 16 19 N -0.57 -29.04 5.29 -306.98 -1.62 -30.66 16 20 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 24 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 28 C -0.12 -2.12 7.63 31.12 0.24 -1.88 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.54 8.09 -2.39 -0.02 0.52 16 33 H 0.07 0.51 7.87 -2.39 -0.02 0.49 16 34 H 0.09 0.57 7.87 -2.39 -0.02 0.55 16 35 H 0.09 0.51 7.92 -2.39 -0.02 0.49 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.42 3.30 8.48 -92.71 -0.79 2.51 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.87 7.83 -2.39 -0.02 1.85 16 40 H 0.35 11.01 7.91 -89.69 -0.71 10.30 16 41 H 0.11 3.03 8.13 -2.39 -0.02 3.01 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 44 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.83 386.88 -0.99 -78.82 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -1.22 Total: 37.09 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 5.94 Total: 15.64 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -6.71 Total: -114.77 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -1.03 Total: -61.53 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -77.83 -0.99 -78.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752614615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.270 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds