Wall clock time and date at job start Tue Mar 31 2020 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 N 1.46905 * 109.46991 * 174.99948 * 4 2 1 6 6 C 1.46897 * 111.00099 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46777 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00660 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99697 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99633 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00481 * 359.97438 * 10 9 7 12 12 C 1.38961 * 119.99664 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99703 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99950 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47135 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47593 * 119.99660 * 14 12 10 17 17 H 1.48504 * 109.47083 * 239.99987 * 14 12 10 18 18 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 19 19 C 1.34781 * 119.99920 * 84.99933 * 18 2 1 20 20 O 1.21274 * 119.99803 * 0.02562 * 19 18 2 21 21 C 1.50697 * 119.99747 * 180.02562 * 19 18 2 22 22 C 1.53008 * 109.47135 * 180.02562 * 21 19 18 23 23 O 1.42900 * 112.84705 * 53.80048 * 22 21 19 24 24 C 1.53785 * 113.60821 * 282.49939 * 22 21 19 25 25 C 1.53781 * 87.07564 * 220.01497 * 24 22 21 26 26 C 1.53777 * 113.61697 * 185.00121 * 22 21 19 27 27 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 30 30 H 1.08998 * 109.47903 * 294.99740 * 4 2 1 31 31 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 32 32 H 1.00905 * 110.99669 * 56.04618 * 5 4 2 33 33 H 1.08995 * 109.47498 * 299.99968 * 6 5 4 34 34 H 1.08996 * 109.46935 * 60.00067 * 6 5 4 35 35 H 0.97000 * 120.00201 * 359.97438 * 9 7 6 36 36 H 0.96998 * 119.99702 * 180.02562 * 13 12 10 37 37 H 0.96998 * 120.00176 * 265.00572 * 18 2 1 38 38 H 1.09006 * 109.47530 * 299.99941 * 21 19 18 39 39 H 1.08998 * 109.47252 * 60.00349 * 21 19 18 40 40 H 0.96694 * 114.00161 * 309.66773 * 23 22 21 41 41 H 1.08999 * 113.61569 * 334.55867 * 24 22 21 42 42 H 1.08998 * 113.61386 * 105.47485 * 24 22 21 43 43 H 1.08997 * 113.61830 * 270.88331 * 25 24 22 44 44 H 1.09004 * 113.61819 * 139.98292 * 25 24 22 45 45 H 1.09004 * 113.61139 * 254.52767 * 26 22 21 46 46 H 1.09002 * 113.61383 * 25.42611 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6043 2.2809 8 8 6.1067 -1.1395 1.3195 9 7 6.2353 -2.2010 3.2635 10 6 7.6012 -2.2810 3.1769 11 1 8.1133 -1.8663 2.3213 12 6 8.3266 -2.8966 4.1897 13 7 7.7034 -3.4015 5.2306 14 14 10.1877 -3.0050 4.0722 15 1 10.6422 -2.3650 2.8115 16 1 10.7986 -2.3057 5.2310 17 1 10.6020 -4.4310 4.0800 18 7 2.0184 -0.6906 -1.1961 19 6 2.1472 -0.0182 -2.3571 20 8 1.8591 1.1586 -2.4114 21 6 2.6490 -0.7288 -3.5876 22 6 2.7012 0.2545 -4.7587 23 8 3.4531 1.4326 -4.4609 24 6 1.3258 0.5408 -5.3843 25 6 2.0277 0.5027 -6.7521 26 6 3.0857 -0.4001 -6.0961 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7516 -0.1583 2.1370 31 1 1.6053 -1.7198 1.2952 32 1 3.9280 0.0826 1.0825 33 1 3.7557 -0.9588 3.2721 34 1 3.6093 -2.5199 2.4296 35 1 5.7754 -2.5731 4.0322 36 1 8.2098 -3.8309 5.9377 37 1 2.2491 -1.6317 -1.1525 38 1 3.6482 -1.1214 -3.3985 39 1 1.9761 -1.5506 -3.8325 40 1 3.1997 1.8620 -3.6324 41 1 0.6049 -0.2640 -5.2410 42 1 0.9245 1.5210 -5.1267 43 1 2.4161 1.4700 -7.0707 44 1 1.4469 0.0026 -7.5272 45 1 4.1051 -0.1796 -6.4130 46 1 2.8458 -1.4622 -6.1472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754266445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:27 Heat of formation + Delta-G solvation = -109.569328 kcal Electronic energy + Delta-G solvation = -26119.862293 eV Core-core repulsion = 22237.798078 eV Total energy + Delta-G solvation = -3882.064214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58536 -38.99963 -38.29483 -36.66570 -34.58027 -34.25301 -33.68667 -31.76416 -31.22995 -29.67533 -27.64910 -25.90083 -25.09611 -23.90131 -23.20206 -21.41935 -20.53089 -19.73415 -19.27650 -17.93452 -17.25825 -16.94393 -16.35121 -15.92514 -15.67888 -15.35778 -15.03374 -14.92129 -14.58299 -14.50751 -14.02285 -13.96384 -13.57589 -13.28569 -13.18230 -12.92987 -12.63213 -12.46906 -12.40052 -12.05029 -11.84072 -11.67772 -11.58314 -11.51539 -11.33305 -11.08288 -11.04227 -10.99683 -10.59627 -10.36329 -10.25295 -9.77803 -9.74551 -9.55053 -9.13725 -8.52841 -8.15699 -7.99582 -6.44956 -3.85729 2.53153 3.08123 3.14371 3.25327 3.32702 3.86693 3.99895 4.01682 4.24607 4.37046 4.45278 4.53901 4.66090 4.71235 4.95580 5.04665 5.05411 5.12260 5.19327 5.24068 5.32503 5.39759 5.45453 5.50500 5.52812 5.53614 5.56950 5.72827 5.74385 5.83669 5.90386 5.91863 5.98053 6.09895 6.18418 6.21064 6.41645 7.08527 7.44956 7.52627 7.53549 7.74502 8.03204 8.18673 8.57640 9.14926 9.50738 10.01925 10.72804 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.002538 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.010053 B =11030.950501 C =12399.047161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.087 0.913 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.703 5.703 19 C 0.522 3.478 20 O -0.554 6.554 21 C -0.166 4.166 22 C 0.131 3.869 23 O -0.548 6.548 24 C -0.161 4.161 25 C -0.136 4.136 26 C -0.130 4.130 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.351 0.649 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.407 0.593 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.390 0.610 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.077 2.736 -13.742 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.105 0.895 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.353 5.353 19 C 0.309 3.691 20 O -0.435 6.435 21 C -0.206 4.206 22 C 0.089 3.911 23 O -0.361 6.361 24 C -0.199 4.199 25 C -0.173 4.173 26 C -0.167 4.167 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.242 0.758 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.245 0.755 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.523 3.077 -15.156 22.631 hybrid contribution 0.352 -0.140 1.990 2.026 sum -16.171 2.936 -13.166 21.058 Atomic orbital electron populations 1.22135 0.94958 1.02205 1.02639 1.20962 0.93587 0.97541 0.84073 0.89506 1.22318 0.89593 1.00692 0.95686 1.60066 1.02984 1.26898 1.40018 1.21678 0.95364 0.99831 0.91348 1.19797 0.87987 0.84651 0.85074 1.90535 1.71082 1.51817 1.33176 1.41876 1.07438 1.50880 1.19846 1.19754 0.81470 1.35015 1.06585 0.87866 1.25272 1.00746 0.96739 0.95227 1.69618 1.36640 1.38591 1.09464 0.85799 0.82172 0.77933 0.78449 1.19179 1.20749 1.20724 1.45867 1.66050 1.14551 1.08860 1.20589 0.76575 0.87242 0.84690 1.90523 1.51518 1.16282 1.85132 1.22362 1.04381 1.00228 0.93633 1.21751 0.92042 0.85712 0.91630 1.86338 1.62045 1.40025 1.47642 1.23570 0.96976 1.02762 0.96571 1.22744 0.97724 1.00368 0.96452 1.23069 1.00592 0.99076 0.93960 0.91905 0.92343 0.91586 0.93871 0.90464 0.82949 0.93827 0.89597 0.77484 0.91908 0.75787 0.87563 0.87986 0.75487 0.90011 0.90711 0.89878 0.91543 0.90412 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 2 C 0.14 1.47 2.81 -67.93 -0.19 1.28 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 4 C 0.05 0.50 5.24 -3.82 -0.02 0.48 16 5 N -0.67 -9.78 5.85 -115.06 -0.67 -10.46 16 6 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 7 C 0.44 10.09 7.82 -10.98 -0.09 10.01 16 8 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.09 16 10 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 12 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 13 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 14 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 N -0.70 -7.27 4.80 -53.81 -0.26 -7.53 16 19 C 0.52 6.02 7.55 -10.98 -0.08 5.93 16 20 O -0.55 -7.75 13.25 -14.25 -0.19 -7.94 16 21 C -0.17 -1.59 5.34 -27.88 -0.15 -1.74 16 22 C 0.13 1.42 1.10 -89.80 -0.10 1.32 16 23 O -0.55 -7.60 13.39 -55.04 -0.74 -8.34 16 24 C -0.16 -1.56 7.17 -25.92 -0.19 -1.75 16 25 C -0.14 -1.20 8.02 -25.92 -0.21 -1.41 16 26 C -0.13 -1.18 7.47 -25.92 -0.19 -1.37 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.35 5.70 8.43 -39.29 -0.33 5.36 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 37 H 0.41 3.82 8.60 -40.82 -0.35 3.47 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.10 0.70 8.05 -51.93 -0.42 0.29 16 40 H 0.39 5.46 6.20 45.56 0.28 5.74 16 41 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.65 8.10 -51.93 -0.42 0.22 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -32.30 381.71 -8.46 -40.76 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -6.96 Total: 20.34 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.13 Total: 4.63 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.27 Total: -55.66 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.84 Total: -31.73 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.30 -8.46 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754266445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.808 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds