Wall clock time and date at job start Tue Mar 31 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47403 * 2 1 4 4 C 1.52998 * 109.46894 * 119.99946 * 2 1 3 5 5 N 1.46902 * 109.46915 * 175.00012 * 4 2 1 6 6 C 1.46904 * 111.00171 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47081 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00288 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99583 * 179.97438 * 7 6 5 10 10 C 1.37100 * 119.99634 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00474 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99853 * 180.02562 * 10 9 7 13 13 N 1.31408 * 120.00218 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00051 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47337 * 90.00000 * 14 12 10 16 16 H 1.48493 * 109.47440 * 210.00288 * 14 12 10 17 17 H 1.48503 * 109.47206 * 330.00280 * 14 12 10 18 18 N 1.46502 * 109.46911 * 239.99430 * 2 1 3 19 19 C 1.34774 * 119.99489 * 84.99909 * 18 2 1 20 20 O 1.21281 * 120.00524 * 0.02562 * 19 18 2 21 21 C 1.50706 * 119.99840 * 179.97438 * 19 18 2 22 22 C 1.53002 * 110.56212 * 57.32769 * 21 19 18 23 23 C 1.54505 * 110.51057 * 180.02562 * 21 19 18 24 24 C 1.54487 * 104.06179 * 118.64934 * 23 21 19 25 25 O 1.44421 * 104.79872 * 336.02098 * 24 23 21 26 26 C 1.44425 * 105.27967 * 40.51065 * 25 24 23 27 27 H 1.09003 * 109.46597 * 299.99991 * 1 2 3 28 28 H 1.08996 * 109.47289 * 60.00051 * 1 2 3 29 29 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47141 * 294.99639 * 4 2 1 31 31 H 1.08998 * 109.47857 * 54.99901 * 4 2 1 32 32 H 1.00899 * 111.00471 * 56.04514 * 5 4 2 33 33 H 1.09003 * 109.46863 * 300.00154 * 6 5 4 34 34 H 1.09006 * 109.46856 * 59.99717 * 6 5 4 35 35 H 0.97000 * 120.00400 * 0.02562 * 9 7 6 36 36 H 0.96996 * 120.00109 * 179.97438 * 13 12 10 37 37 H 0.96996 * 120.00032 * 265.00035 * 18 2 1 38 38 H 1.08996 * 109.47170 * 182.67715 * 22 21 19 39 39 H 1.09004 * 109.46875 * 302.67842 * 22 21 19 40 40 H 1.09000 * 109.47175 * 62.67809 * 22 21 19 41 41 H 1.09003 * 110.51737 * 0.02562 * 23 21 19 42 42 H 1.08999 * 110.63305 * 237.34984 * 23 21 19 43 43 H 1.08997 * 110.37332 * 94.85398 * 24 23 21 44 44 H 1.09004 * 110.37288 * 217.19057 * 24 23 21 45 45 H 1.08999 * 110.37470 * 200.65665 * 26 25 24 46 46 H 1.09007 * 110.46197 * 78.36416 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8267 1.1904 6 6 4.0305 -1.5148 2.3768 7 6 5.5317 -1.6044 2.2807 8 8 6.1066 -1.1402 1.3189 9 7 6.2355 -2.1994 3.2641 10 6 7.6012 -2.2814 3.1765 11 1 8.1132 -1.8688 2.3196 12 6 8.3269 -2.8953 4.1901 13 7 7.7040 -3.3978 5.2324 14 14 10.1877 -3.0064 4.0711 15 1 10.7965 -1.8072 4.7009 16 1 10.6568 -4.2270 4.7746 17 1 10.5893 -3.0731 2.6429 18 7 2.0184 -0.6907 -1.1961 19 6 2.1470 -0.0184 -2.3571 20 8 1.8590 1.1584 -2.4116 21 6 2.6498 -0.7288 -3.5875 22 6 1.7604 -1.9297 -3.9158 23 6 2.7118 0.2435 -4.7866 24 6 4.2071 0.2667 -5.1742 25 8 4.9062 -0.1171 -3.9702 26 6 4.1148 -1.1781 -3.3923 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.7517 -0.1583 2.1369 31 1 1.6054 -1.7198 1.2953 32 1 3.9281 0.0825 1.0824 33 1 3.7559 -0.9570 3.2721 34 1 3.6096 -2.5189 2.4310 35 1 5.7757 -2.5703 4.0335 36 1 8.2105 -3.8267 5.9397 37 1 2.2490 -1.6319 -1.1525 38 1 2.1665 -2.4574 -4.7788 39 1 1.7291 -2.6034 -3.0596 40 1 0.7521 -1.5837 -4.1431 41 1 2.3792 1.2382 -4.4895 42 1 2.1084 -0.1287 -5.6145 43 1 4.4034 -0.4498 -5.9718 44 1 4.5038 1.2693 -5.4821 45 1 4.3407 -1.2853 -2.3314 46 1 4.2966 -2.1172 -3.9151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754288510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:21 Heat of formation + Delta-G solvation = -124.998206 kcal Electronic energy + Delta-G solvation = -26783.941340 eV Core-core repulsion = 22901.208079 eV Total energy + Delta-G solvation = -3882.733261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75816 -38.71861 -38.21254 -36.59980 -34.33423 -33.93307 -33.57498 -31.26261 -31.01090 -29.55483 -27.61097 -26.57944 -25.07298 -23.82586 -23.19901 -22.53153 -20.94548 -19.63157 -19.22192 -17.90538 -17.39724 -16.69844 -16.19325 -15.97786 -15.64863 -15.27534 -14.90310 -14.77734 -14.58164 -14.31146 -14.02120 -13.82522 -13.51767 -13.45916 -13.23750 -12.97008 -12.74648 -12.59048 -12.32163 -12.02613 -11.84068 -11.75760 -11.56702 -11.52520 -11.48510 -11.16658 -11.03920 -10.96002 -10.82341 -10.38985 -10.21745 -10.03847 -9.57185 -9.50887 -9.04843 -8.48806 -8.11761 -7.96378 -6.42054 -3.82725 2.62567 3.11072 3.18184 3.26931 3.33199 3.90256 3.90404 4.04719 4.17910 4.28005 4.50570 4.73453 4.74459 4.85169 4.96924 5.04970 5.06910 5.10701 5.22460 5.27569 5.30332 5.38195 5.43454 5.50946 5.53954 5.55066 5.57931 5.65701 5.76263 5.77353 5.80789 5.89920 5.93933 6.00953 6.03677 6.24537 6.50563 6.70545 7.12860 7.54167 7.55332 7.58083 8.06171 8.24694 8.60953 9.17962 9.53953 10.05458 10.75708 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.003083 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.751366 B = 9081.209528 C =10487.460212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.580 6.580 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.705 5.705 19 C 0.534 3.466 20 O -0.543 6.543 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.143 4.143 24 C 0.044 3.956 25 O -0.364 6.364 26 C 0.057 3.943 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.352 0.648 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.405 0.595 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 1.638 -13.963 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.464 6.464 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.355 5.355 19 C 0.319 3.681 20 O -0.420 6.420 21 C -0.121 4.121 22 C -0.192 4.192 23 C -0.181 4.181 24 C -0.033 4.033 25 O -0.282 6.282 26 C -0.021 4.021 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.124 0.876 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.927 2.219 -14.758 21.827 hybrid contribution 0.428 -0.284 1.269 1.369 sum -15.499 1.935 -13.489 20.638 Atomic orbital electron populations 1.22131 0.95015 1.02173 1.02573 1.20952 0.93543 0.97546 0.84021 0.89581 1.22311 0.89607 1.00648 0.95666 1.60076 1.02982 1.26998 1.39903 1.21681 0.95373 0.99809 0.91363 1.19802 0.87992 0.84640 0.85080 1.90547 1.71063 1.51689 1.33112 1.41862 1.07403 1.51045 1.19759 1.19711 0.81522 1.35114 1.06488 0.87910 1.25255 1.00684 0.96759 0.95226 1.69608 1.36696 1.38711 1.09392 0.85862 0.82213 0.77625 0.78642 1.20423 1.20935 1.19358 1.45774 1.66617 1.14337 1.08795 1.20073 0.76781 0.86907 0.84306 1.90643 1.50570 1.15929 1.84886 1.22168 0.98054 0.97224 0.94618 1.21807 0.99171 0.95704 1.02507 1.23055 0.97541 1.01520 0.95987 1.23428 0.90646 1.00928 0.88292 1.89232 1.47332 1.53508 1.38174 1.23576 0.86370 0.90886 1.01241 0.91615 0.91972 0.92328 0.93884 0.90475 0.82886 0.93853 0.89629 0.77511 0.91891 0.76015 0.91163 0.91631 0.91744 0.88341 0.90190 0.92385 0.89040 0.87580 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.59 2.81 -67.93 -0.19 1.40 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 C 0.05 0.52 5.24 -3.82 -0.02 0.50 16 5 N -0.67 -10.03 5.85 -115.06 -0.67 -10.70 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 8 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 11 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 14 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 18 N -0.70 -7.93 4.50 -53.80 -0.24 -8.17 16 19 C 0.53 6.94 6.44 -10.98 -0.07 6.87 16 20 O -0.54 -8.88 14.94 5.56 0.08 -8.79 16 21 C -0.12 -1.24 0.89 -154.09 -0.14 -1.37 16 22 C -0.13 -0.99 8.22 37.16 0.31 -0.68 16 23 C -0.14 -1.46 6.31 -25.16 -0.16 -1.62 16 24 C 0.04 0.47 7.63 37.94 0.29 0.76 16 25 O -0.36 -5.38 11.65 -35.23 -0.41 -5.79 16 26 C 0.06 0.69 6.72 37.93 0.25 0.94 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.35 5.91 8.43 -39.29 -0.33 5.58 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.40 4.09 7.90 -40.82 -0.32 3.77 16 38 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.06 0.43 7.44 -51.93 -0.39 0.04 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 1.21 6.50 -51.93 -0.34 0.87 16 42 H 0.08 0.62 7.74 -51.93 -0.40 0.21 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.11 1.49 7.71 -51.93 -0.40 1.09 16 46 H 0.07 0.70 7.82 -51.92 -0.41 0.29 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -33.67 378.85 -7.00 -40.67 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -7.46 Total: 15.84 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 0.27 Total: 8.65 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.25 Total: -56.82 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.24 Total: -30.13 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.67 -7.00 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754288510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.329 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds