Wall clock time and date at job start Tue Mar 31 2020 04:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47211 * 2 1 4 4 O 1.42903 * 109.46664 * 120.00204 * 2 1 3 5 5 C 1.42896 * 114.00464 * 90.00085 * 4 2 1 6 6 C 1.50700 * 109.47083 * 180.02562 * 5 4 2 7 7 O 1.21270 * 120.00381 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99796 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99818 * 359.97438 * 8 6 5 10 10 C 1.46494 * 120.00072 * 180.02562 * 8 6 5 11 11 C 1.53937 * 113.73257 * 239.99677 * 10 8 6 12 12 N 1.47955 * 86.18157 * 269.35781 * 11 10 8 13 13 C 1.46896 * 111.00525 * 222.41550 * 12 11 10 14 14 C 1.50703 * 109.47363 * 169.99959 * 13 12 11 15 15 O 1.21288 * 120.00165 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99853 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99841 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99746 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99567 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00700 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46869 * 60.00005 * 21 19 17 23 23 H 1.48497 * 109.47049 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46951 * 300.00438 * 21 19 17 25 25 C 1.47961 * 90.76430 * 335.31007 * 12 11 10 26 26 H 1.08996 * 109.46924 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47123 * 300.00584 * 1 2 3 28 28 H 1.09005 * 109.46608 * 60.00038 * 1 2 3 29 29 H 1.08994 * 109.47123 * 239.99416 * 2 1 3 30 30 H 1.09004 * 109.47476 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47347 * 299.99777 * 3 2 1 32 32 H 1.09000 * 109.47302 * 59.99981 * 3 2 1 33 33 H 1.09000 * 109.47144 * 59.99547 * 5 4 2 34 34 H 1.09007 * 109.46670 * 299.99695 * 5 4 2 35 35 H 1.09008 * 109.46984 * 270.00101 * 9 8 6 36 36 H 1.08993 * 109.47005 * 30.00062 * 9 8 6 37 37 H 1.08998 * 109.46819 * 150.00845 * 9 8 6 38 38 H 1.09001 * 113.00985 * 11.62465 * 10 8 6 39 39 H 1.09005 * 113.75745 * 23.67504 * 11 10 8 40 40 H 1.08996 * 113.76539 * 155.04190 * 11 10 8 41 41 H 1.08998 * 109.47190 * 290.00447 * 13 12 11 42 42 H 1.09002 * 109.47036 * 50.00132 * 13 12 11 43 43 H 0.97001 * 120.00133 * 0.02562 * 16 14 13 44 44 H 0.96992 * 120.00526 * 179.97438 * 20 19 17 45 45 H 1.09002 * 113.75838 * 270.37219 * 25 12 11 46 46 H 1.09002 * 113.76303 * 139.00391 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7001 -2.6834 2.2751 7 8 2.8739 -1.9811 3.2483 8 7 2.9551 -4.0051 2.3436 9 6 2.7456 -4.8534 1.1676 10 6 3.4407 -4.5936 3.5942 11 6 4.8160 -5.2730 3.4662 12 7 4.0660 -6.5080 3.1476 13 6 4.6476 -7.6692 3.8341 14 6 3.7259 -8.8525 3.6883 15 8 2.6866 -8.7396 3.0735 16 7 4.0567 -10.0364 4.2411 17 6 3.2179 -11.1128 4.1090 18 1 2.2925 -11.0122 3.5615 19 6 3.5592 -12.3334 4.6785 20 7 4.6856 -12.4560 5.3442 21 14 2.4168 -13.8003 4.4978 22 1 2.2380 -14.1139 3.0573 23 1 3.0051 -14.9742 5.1912 24 1 1.0988 -13.4785 5.1016 25 6 2.8819 -6.0002 3.8752 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.9319 -2.2468 0.1988 34 1 1.2537 -2.5434 0.7125 35 1 1.7247 -5.2354 1.1724 36 1 2.9103 -4.2678 0.2633 37 1 3.4460 -5.6883 1.1926 38 1 3.3646 -3.9137 4.4427 39 1 5.4160 -4.8974 2.6372 40 1 5.3693 -5.3249 4.4039 41 1 5.6153 -7.9056 3.3917 42 1 4.7781 -7.4384 4.8914 43 1 4.8877 -10.1266 4.7332 44 1 4.9236 -13.3079 5.7421 45 1 2.8694 -6.2646 4.9325 46 1 1.9365 -6.2055 3.3730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754570950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:31 Heat of formation + Delta-G solvation = -69.384154 kcal Electronic energy + Delta-G solvation = -26148.199074 eV Core-core repulsion = 22267.877419 eV Total energy + Delta-G solvation = -3880.321654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77615 -39.36952 -38.19145 -37.56780 -34.85924 -33.90344 -33.07722 -31.31851 -30.23565 -28.02353 -27.44506 -27.03908 -26.02902 -25.24577 -23.41166 -21.67985 -20.81160 -19.29929 -18.64475 -17.95397 -17.49759 -16.96364 -16.42336 -16.32840 -15.93749 -15.36230 -15.03735 -14.97739 -14.57394 -14.45960 -13.99168 -13.74419 -13.34950 -13.32647 -13.09528 -12.88674 -12.69908 -12.52506 -12.34585 -12.32211 -12.15419 -11.97090 -11.76694 -11.57510 -11.50266 -11.09604 -11.06815 -10.92464 -10.78585 -10.46621 -10.23745 -9.96845 -9.80250 -9.52249 -8.74446 -8.63343 -8.26500 -7.99301 -6.44245 -3.85332 2.47222 2.52722 3.17736 3.23854 3.27886 3.57801 3.86006 3.96655 4.18488 4.35433 4.52562 4.59468 4.66748 4.79092 4.82152 4.85165 4.93533 5.00059 5.19228 5.20368 5.24661 5.34236 5.39722 5.44971 5.47740 5.48810 5.59675 5.64800 5.70237 5.76568 5.82793 5.83710 5.86840 6.07324 6.11177 6.22115 6.50710 6.55440 6.83566 7.10400 7.32966 7.52155 8.02463 8.07599 8.58164 9.14900 9.51174 10.02471 10.73327 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.002178 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.441436 B =12851.259976 C =13365.847860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.359 6.359 5 C 0.048 3.952 6 C 0.515 3.485 7 O -0.525 6.525 8 N -0.588 5.588 9 C 0.068 3.932 10 C 0.112 3.888 11 C -0.012 4.012 12 N -0.452 5.452 13 C 0.009 3.991 14 C 0.443 3.557 15 O -0.581 6.581 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.014 3.986 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.078 0.922 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 20.988 -9.392 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.278 6.278 5 C -0.032 4.032 6 C 0.302 3.698 7 O -0.400 6.400 8 N -0.322 5.322 9 C -0.074 4.074 10 C 0.007 3.993 11 C -0.142 4.142 12 N -0.175 5.175 13 C -0.123 4.123 14 C 0.229 3.771 15 O -0.465 6.465 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.115 4.115 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.255 21.126 -9.700 23.355 hybrid contribution 0.134 -1.136 0.815 1.405 sum -2.121 19.990 -8.885 21.978 Atomic orbital electron populations 1.22319 0.95807 1.02525 1.02768 1.22170 0.93835 0.94015 0.87883 1.21849 1.01929 0.94258 1.02604 1.88057 1.86582 1.17860 1.35260 1.22264 1.01219 0.83869 0.95877 1.20246 0.77957 0.81816 0.89740 1.90705 1.51409 1.60220 1.37684 1.47391 1.65364 1.06824 1.12588 1.22056 1.03648 0.96337 0.85371 1.22477 0.94275 0.95167 0.87359 1.24483 0.96493 0.91662 1.01601 1.68389 1.03601 1.00353 1.45167 1.22471 0.99245 0.92963 0.97650 1.19672 0.88368 0.84123 0.84966 1.90509 1.26493 1.84099 1.45379 1.41873 1.21778 1.08490 1.47888 1.19635 1.03222 0.87630 1.32441 0.87997 1.25265 0.97009 0.99118 0.96539 1.69597 1.22593 1.26745 1.35333 0.85918 0.79783 0.79927 0.78589 1.19890 1.20968 1.19927 1.24176 0.97640 0.90999 0.98697 0.92399 0.91563 0.91525 0.92041 0.91889 0.91158 0.91600 0.90237 0.90253 0.92294 0.92060 0.87419 0.87387 0.89165 0.90301 0.89134 0.92632 0.77493 0.91796 0.90386 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 9.53 37.16 0.35 -0.88 16 2 C 0.08 0.63 3.34 -26.73 -0.09 0.54 16 3 C -0.15 -1.04 9.56 37.15 0.36 -0.68 16 4 O -0.36 -4.19 9.52 -55.14 -0.52 -4.72 16 5 C 0.05 0.47 4.78 36.01 0.17 0.65 16 6 C 0.52 6.89 7.75 -10.98 -0.09 6.81 16 7 O -0.52 -9.10 15.99 -14.34 -0.23 -9.33 16 8 N -0.59 -7.29 3.09 -175.28 -0.54 -7.84 16 9 C 0.07 0.73 9.19 59.85 0.55 1.28 16 10 C 0.11 1.47 4.51 -69.63 -0.31 1.16 16 11 C -0.01 -0.15 7.45 -2.77 -0.02 -0.17 16 12 N -0.45 -6.95 4.08 -239.90 -0.98 -7.93 16 13 C 0.01 0.15 5.31 -4.98 -0.03 0.12 16 14 C 0.44 10.13 7.59 -10.98 -0.08 10.05 16 15 O -0.58 -15.08 15.12 5.55 0.08 -15.00 16 16 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 21 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.01 0.22 5.99 -2.77 -0.02 0.20 16 26 H 0.06 0.40 7.87 -51.93 -0.41 -0.01 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.39 7.79 -51.93 -0.40 -0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.60 7.34 -51.93 -0.38 0.22 16 34 H 0.08 0.65 7.84 -51.93 -0.41 0.24 16 35 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.47 6.44 -51.93 -0.33 0.14 16 37 H 0.11 1.37 6.07 -51.93 -0.32 1.05 16 38 H 0.11 1.47 7.25 -51.93 -0.38 1.09 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.87 7.79 -51.93 -0.40 0.46 16 41 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 43 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.08 1.16 7.78 -51.93 -0.40 0.76 16 46 H 0.10 1.65 7.76 -51.93 -0.40 1.24 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -33.46 377.32 -7.76 -41.22 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.45 Total: 8.53 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 0.56 Total: 11.18 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.85 Total: -53.41 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.67 Total: -29.04 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.46 -7.76 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754570950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.162 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds