Wall clock time and date at job start Tue Mar 31 2020 04:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47211 * 2 1 4 4 O 1.42903 * 109.46664 * 120.00204 * 2 1 3 5 5 C 1.42896 * 114.00464 * 90.00085 * 4 2 1 6 6 C 1.50700 * 109.47083 * 180.02562 * 5 4 2 7 7 O 1.21270 * 120.00381 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99796 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99818 * 359.97438 * 8 6 5 10 10 C 1.46494 * 120.00072 * 180.02562 * 8 6 5 11 11 C 1.53937 * 113.73257 * 239.99677 * 10 8 6 12 12 N 1.47955 * 86.18157 * 269.35781 * 11 10 8 13 13 C 1.46896 * 111.00525 * 222.41550 * 12 11 10 14 14 C 1.50703 * 109.47363 * 169.99959 * 13 12 11 15 15 O 1.21288 * 120.00165 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99853 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99841 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99746 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99567 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00700 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46869 * 60.00005 * 21 19 17 23 23 H 1.48497 * 109.47049 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46951 * 300.00438 * 21 19 17 25 25 C 1.47961 * 90.76430 * 335.31007 * 12 11 10 26 26 H 1.08996 * 109.46924 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47123 * 300.00584 * 1 2 3 28 28 H 1.09005 * 109.46608 * 60.00038 * 1 2 3 29 29 H 1.08994 * 109.47123 * 239.99416 * 2 1 3 30 30 H 1.09004 * 109.47476 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47347 * 299.99777 * 3 2 1 32 32 H 1.09000 * 109.47302 * 59.99981 * 3 2 1 33 33 H 1.09000 * 109.47144 * 59.99547 * 5 4 2 34 34 H 1.09007 * 109.46670 * 299.99695 * 5 4 2 35 35 H 1.09008 * 109.46984 * 270.00101 * 9 8 6 36 36 H 1.08993 * 109.47005 * 30.00062 * 9 8 6 37 37 H 1.08998 * 109.46819 * 150.00845 * 9 8 6 38 38 H 1.09001 * 113.00985 * 11.62465 * 10 8 6 39 39 H 1.09005 * 113.75745 * 23.67504 * 11 10 8 40 40 H 1.08996 * 113.76539 * 155.04190 * 11 10 8 41 41 H 1.08998 * 109.47190 * 290.00447 * 13 12 11 42 42 H 1.09002 * 109.47036 * 50.00132 * 13 12 11 43 43 H 0.97001 * 120.00133 * 0.02562 * 16 14 13 44 44 H 0.96992 * 120.00526 * 179.97438 * 20 19 17 45 45 H 1.09002 * 113.75838 * 270.37219 * 25 12 11 46 46 H 1.09002 * 113.76303 * 139.00391 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7001 -2.6834 2.2751 7 8 2.8739 -1.9811 3.2483 8 7 2.9551 -4.0051 2.3436 9 6 2.7456 -4.8534 1.1676 10 6 3.4407 -4.5936 3.5942 11 6 4.8160 -5.2730 3.4662 12 7 4.0660 -6.5080 3.1476 13 6 4.6476 -7.6692 3.8341 14 6 3.7259 -8.8525 3.6883 15 8 2.6866 -8.7396 3.0735 16 7 4.0567 -10.0364 4.2411 17 6 3.2179 -11.1128 4.1090 18 1 2.2925 -11.0122 3.5615 19 6 3.5592 -12.3334 4.6785 20 7 4.6856 -12.4560 5.3442 21 14 2.4168 -13.8003 4.4978 22 1 2.2380 -14.1139 3.0573 23 1 3.0051 -14.9742 5.1912 24 1 1.0988 -13.4785 5.1016 25 6 2.8819 -6.0002 3.8752 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.9319 -2.2468 0.1988 34 1 1.2537 -2.5434 0.7125 35 1 1.7247 -5.2354 1.1724 36 1 2.9103 -4.2678 0.2633 37 1 3.4460 -5.6883 1.1926 38 1 3.3646 -3.9137 4.4427 39 1 5.4160 -4.8974 2.6372 40 1 5.3693 -5.3249 4.4039 41 1 5.6153 -7.9056 3.3917 42 1 4.7781 -7.4384 4.8914 43 1 4.8877 -10.1266 4.7332 44 1 4.9236 -13.3079 5.7421 45 1 2.8694 -6.2646 4.9325 46 1 1.9365 -6.2055 3.3730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754570950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:30 Heat of formation + Delta-G solvation = -93.426899 kcal Electronic energy + Delta-G solvation = -26149.241645 eV Core-core repulsion = 22267.877419 eV Total energy + Delta-G solvation = -3881.364226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.89178 -40.50270 -39.52833 -38.76811 -36.08601 -35.75390 -33.71073 -33.28332 -31.53484 -28.92204 -28.09722 -28.00543 -27.22181 -26.86881 -24.84331 -22.27583 -21.83841 -21.05872 -19.92024 -19.66379 -18.44203 -17.85999 -17.79876 -17.32194 -17.11040 -16.66136 -16.40817 -16.30752 -15.76889 -15.61450 -15.40621 -14.98528 -14.76452 -14.33927 -14.13376 -13.79114 -13.68355 -13.51067 -13.46758 -13.22898 -13.07879 -13.04054 -12.99802 -12.86447 -12.69703 -12.43534 -12.35044 -12.15760 -12.13437 -11.95665 -11.63425 -11.48208 -10.85762 -10.64127 -10.31245 -10.00623 -9.76054 -9.65437 -8.46000 -5.94513 1.39589 1.41563 1.46831 1.52211 1.63731 2.06607 2.28656 2.77486 2.84817 3.20652 3.26543 3.46487 3.59282 3.77612 4.00475 4.09791 4.11427 4.21055 4.25921 4.26951 4.31119 4.39566 4.44217 4.46964 4.55292 4.61159 4.71383 4.75830 4.80502 4.83439 4.89707 4.91658 4.95725 5.15419 5.30123 5.30799 5.34183 5.41298 5.51730 5.83512 6.04681 6.15549 6.38692 6.60706 7.07487 7.13354 7.57357 8.12582 8.71099 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.002178 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.441436 B =12851.259976 C =13365.847860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 C -0.149 4.149 4 O -0.393 6.393 5 C 0.050 3.950 6 C 0.511 3.489 7 O -0.573 6.573 8 N -0.586 5.586 9 C 0.070 3.930 10 C 0.117 3.883 11 C 0.002 3.998 12 N -0.464 5.464 13 C 0.020 3.980 14 C 0.442 3.558 15 O -0.615 6.615 16 N -0.576 5.576 17 C -0.331 4.331 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.273 1.273 25 C 0.012 3.988 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.076 0.924 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 21.468 -10.719 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 C -0.206 4.206 4 O -0.312 6.312 5 C -0.029 4.029 6 C 0.300 3.700 7 O -0.452 6.452 8 N -0.319 5.319 9 C -0.071 4.071 10 C 0.011 3.989 11 C -0.128 4.128 12 N -0.187 5.187 13 C -0.111 4.111 14 C 0.230 3.770 15 O -0.501 6.501 16 N -0.213 5.213 17 C -0.461 4.461 18 H 0.097 0.903 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.815 3.185 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.117 4.117 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.738 21.605 -11.044 24.326 hybrid contribution -0.045 -1.219 1.194 1.707 sum -1.783 20.386 -9.850 22.711 Atomic orbital electron populations 1.22315 0.95297 1.02617 1.03025 1.22429 0.94312 0.94272 0.87562 1.21883 1.01641 0.94009 1.03082 1.88027 1.87067 1.18667 1.37483 1.22355 1.02821 0.83384 0.94323 1.20931 0.77009 0.81610 0.90472 1.90679 1.53608 1.61274 1.39592 1.47489 1.64750 1.06928 1.12696 1.22109 1.02850 0.96135 0.86050 1.22366 0.94699 0.93927 0.87888 1.24513 0.95998 0.89182 1.03060 1.68421 1.04208 1.00861 1.45233 1.22384 0.98276 0.90986 0.99480 1.20704 0.88463 0.84884 0.82969 1.90484 1.28344 1.84852 1.46437 1.41952 1.21776 1.08835 1.48746 1.19602 1.03424 0.89333 1.33727 0.90280 1.26025 0.98413 1.01117 0.95821 1.69661 1.23502 1.27554 1.35464 0.85006 0.77916 0.76940 0.78590 1.19671 1.19627 1.19796 1.24106 0.96811 0.92549 0.98264 0.92388 0.93098 0.89473 0.89805 0.92357 0.88790 0.93009 0.87241 0.88268 0.92726 0.88459 0.89185 0.87953 0.87880 0.88325 0.87126 0.90423 0.77081 0.91367 0.90540 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.53 71.98 0.69 -1.47 16 2 C 0.07 1.00 3.34 30.59 0.10 1.10 16 3 C -0.15 -1.86 9.56 71.98 0.69 -1.17 16 4 O -0.39 -8.72 9.52 -129.94 -1.24 -9.96 16 5 C 0.05 0.90 4.78 71.24 0.34 1.24 16 6 C 0.51 13.19 7.75 87.66 0.68 13.86 16 7 O -0.57 -19.96 15.99 16.04 0.26 -19.71 16 8 N -0.59 -13.89 3.09 -826.84 -2.56 -16.44 16 9 C 0.07 1.39 9.19 127.77 1.17 2.56 16 10 C 0.12 2.97 4.51 46.56 0.21 3.18 16 11 C 0.00 0.04 7.45 86.41 0.64 0.69 16 12 N -0.46 -13.70 4.08 -912.90 -3.72 -17.42 16 13 C 0.02 0.66 5.31 85.56 0.45 1.11 16 14 C 0.44 20.30 7.59 87.66 0.67 20.97 16 15 O -0.62 -32.60 15.12 -3.05 -0.05 -32.65 16 16 N -0.58 -28.95 5.29 -306.99 -1.62 -30.57 16 17 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 18 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 20 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 21 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C 0.01 0.37 5.99 86.41 0.52 0.89 16 26 H 0.06 0.70 7.87 -2.39 -0.02 0.68 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.08 0.78 7.79 -2.39 -0.02 0.77 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 1.27 7.34 -2.39 -0.02 1.25 16 34 H 0.10 1.36 7.84 -2.38 -0.02 1.34 16 35 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.10 1.19 6.44 -2.39 -0.02 1.18 16 37 H 0.09 2.17 6.07 -2.39 -0.01 2.16 16 38 H 0.10 2.77 7.25 -2.39 -0.02 2.75 16 39 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.10 1.87 7.79 -2.39 -0.02 1.85 16 41 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.08 2.21 7.69 -2.39 -0.02 2.19 16 43 H 0.40 18.96 7.90 -92.71 -0.73 18.22 16 44 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.08 2.29 7.78 -2.39 -0.02 2.27 16 46 H 0.08 2.60 7.76 -2.39 -0.02 2.59 16 Total: -1.00 -74.21 377.32 1.07 -73.13 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.25 Total: 33.12 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 7.44 Total: 24.95 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -7.62 Total: -113.49 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -1.03 Total: -62.31 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -74.21 1.07 -73.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754570950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.295 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds