Wall clock time and date at job start Tue Mar 31 2020 04:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00137 * 2 1 4 4 C 1.50705 * 109.46886 * 180.02562 * 3 2 1 5 5 O 1.21273 * 120.00083 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99516 * 179.97438 * 4 3 2 7 7 C 1.47013 * 125.65142 * 0.03135 * 6 4 3 8 8 C 1.54330 * 107.27284 * 178.90079 * 7 6 4 9 9 C 1.55159 * 102.93657 * 337.80239 * 8 7 6 10 10 H 1.09000 * 111.00620 * 277.38832 * 9 8 7 11 11 C 1.53003 * 110.99837 * 153.58037 * 9 8 7 12 12 H 1.08996 * 109.47189 * 303.17069 * 11 9 8 13 13 C 1.53001 * 109.47575 * 63.18196 * 11 9 8 14 14 N 1.46912 * 109.46713 * 183.17930 * 11 9 8 15 15 C 1.46896 * 110.99636 * 154.99789 * 14 11 9 16 16 C 1.50703 * 109.46774 * 179.97438 * 15 14 11 17 17 O 1.21292 * 119.99840 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99773 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00039 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99610 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00384 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99833 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00108 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00199 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00192 * 23 21 19 27 27 C 1.47471 * 125.62458 * 179.97438 * 6 4 3 28 28 H 1.09000 * 109.47085 * 300.00046 * 1 2 3 29 29 H 1.08996 * 109.47181 * 59.99573 * 1 2 3 30 30 H 1.09004 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47244 * 60.00151 * 3 2 1 32 32 H 1.09004 * 109.47057 * 299.99615 * 3 2 1 33 33 H 1.08994 * 109.88856 * 59.47632 * 7 6 4 34 34 H 1.09001 * 110.01210 * 298.38404 * 7 6 4 35 35 H 1.09000 * 110.71539 * 219.44167 * 8 7 6 36 36 H 1.08994 * 110.72266 * 96.16418 * 8 7 6 37 37 H 1.08999 * 109.47225 * 179.97438 * 13 11 9 38 38 H 1.09003 * 109.46633 * 300.00074 * 13 11 9 39 39 H 1.08994 * 109.47269 * 59.99281 * 13 11 9 40 40 H 1.00899 * 110.99473 * 278.95135 * 14 11 9 41 41 H 1.09001 * 109.47275 * 60.00237 * 15 14 11 42 42 H 1.08996 * 109.47530 * 299.99593 * 15 14 11 43 43 H 0.96992 * 120.00503 * 359.97438 * 18 16 15 44 44 H 0.96993 * 119.99996 * 359.97438 * 22 21 19 45 45 H 1.09006 * 110.34818 * 85.32960 * 27 6 4 46 46 H 1.09003 * 110.40958 * 323.00043 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 8 4.0340 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 3.7780 3.6798 -0.0008 8 6 5.0088 4.6105 0.0265 9 6 6.1204 3.6994 0.6110 10 1 6.0688 3.6693 1.6993 11 6 7.5043 4.1538 0.1428 12 1 7.5343 4.1636 -0.9467 13 6 7.7857 5.5610 0.6735 14 7 8.5227 3.2256 0.6523 15 6 9.7199 3.2390 -0.1988 16 6 10.7401 2.2775 0.3543 17 8 10.4942 1.6439 1.3589 18 7 11.9261 2.1225 -0.2668 19 6 12.8545 1.2481 0.2366 20 1 12.6352 0.6833 1.1307 21 6 14.0770 1.0879 -0.4040 22 7 14.3436 1.7747 -1.4922 23 14 15.3421 -0.1028 0.2823 24 1 16.5526 -0.0891 -0.5778 25 1 14.7691 -1.4726 0.3095 26 1 15.7107 0.3069 1.6613 27 6 5.7509 2.3249 -0.0014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.1633 3.8520 0.8827 34 1 3.1927 3.8656 -0.9013 35 1 4.8303 5.4668 0.6768 36 1 5.2677 4.9370 -0.9807 37 1 8.7718 5.8845 0.3404 38 1 7.0300 6.2496 0.2956 39 1 7.7558 5.5511 1.7630 40 1 8.7578 3.4372 1.6104 41 1 10.1412 4.2441 -0.2176 42 1 9.4494 2.9394 -1.2113 43 1 12.1230 2.6294 -1.0700 44 1 13.6869 2.3933 -1.8483 45 1 6.1314 2.2485 -1.0200 46 1 6.1466 1.5168 0.6138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754789851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:52 Heat of formation + Delta-G solvation = -111.213841 kcal Electronic energy + Delta-G solvation = -25988.324422 eV Core-core repulsion = 22106.188896 eV Total energy + Delta-G solvation = -3882.135526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36738 -38.83326 -38.22654 -37.38830 -35.98741 -34.24455 -32.33795 -31.05102 -29.95062 -29.70423 -28.29885 -26.30719 -26.11680 -23.96678 -23.50132 -22.22761 -20.46091 -19.64135 -19.50416 -17.88706 -17.61906 -17.01229 -16.70339 -16.45028 -15.73803 -15.54068 -15.43718 -14.85998 -14.62198 -14.26292 -14.22261 -14.02325 -13.71729 -13.45853 -13.34019 -13.12163 -12.75253 -12.70745 -12.41777 -12.31006 -12.17555 -11.83490 -11.66840 -11.45586 -11.21903 -11.14771 -11.02825 -10.90466 -10.78019 -10.17996 -10.17934 -9.91018 -9.83738 -9.51685 -8.82064 -8.50466 -8.10554 -7.99960 -6.72637 -3.85540 2.44655 2.46850 3.33887 3.37674 3.57846 3.61034 3.87062 3.94671 4.22935 4.25612 4.35351 4.50458 4.63580 4.67531 4.77451 4.86232 4.92513 4.97720 5.01632 5.05769 5.09284 5.23268 5.26455 5.28134 5.28810 5.33957 5.52133 5.57788 5.63685 5.69260 5.74799 5.88662 5.99018 6.00919 6.05809 6.08167 6.18581 6.62663 7.13148 7.30442 7.58972 7.83856 8.01972 8.11068 8.63020 8.83006 9.50548 9.90885 10.70877 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.002413 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.235118 B =11602.410835 C =12833.281799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.049 3.951 4 C 0.525 3.475 5 O -0.513 6.513 6 N -0.622 5.622 7 C 0.098 3.902 8 C -0.127 4.127 9 C -0.085 4.085 10 H 0.086 0.914 11 C 0.094 3.906 12 H 0.080 0.920 13 C -0.183 4.183 14 N -0.663 5.663 15 C 0.052 3.948 16 C 0.443 3.557 17 O -0.575 6.575 18 N -0.576 5.576 19 C -0.381 4.381 20 H 0.099 0.901 21 C -0.010 4.010 22 N -0.902 5.902 23 Si 1.091 2.909 24 H -0.279 1.279 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.124 3.876 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.351 0.649 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.375 0.625 44 H 0.260 0.740 45 H 0.069 0.931 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.924 10.994 0.268 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.031 4.031 4 C 0.312 3.688 5 O -0.387 6.387 6 N -0.360 5.360 7 C -0.025 4.025 8 C -0.165 4.165 9 C -0.105 4.105 10 H 0.105 0.895 11 C -0.017 4.017 12 H 0.098 0.902 13 C -0.242 4.242 14 N -0.295 5.295 15 C -0.081 4.081 16 C 0.229 3.771 17 O -0.458 6.458 18 N -0.215 5.215 19 C -0.510 4.510 20 H 0.117 0.883 21 C -0.213 4.213 22 N -0.541 5.541 23 Si 0.917 3.083 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.211 1.211 27 C 0.002 3.998 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.171 0.829 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.208 0.792 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.472 8.493 0.404 25.907 hybrid contribution -1.372 2.261 -0.069 2.646 sum -25.844 10.754 0.335 27.994 Atomic orbital electron populations 1.22842 0.80359 1.03413 1.00034 1.88037 1.19781 1.25219 1.95385 1.22207 0.91651 0.86882 1.02335 1.19863 0.88232 0.83451 0.77251 1.90782 1.74382 1.25709 1.47808 1.48511 1.08047 1.05341 1.74058 1.22070 0.97429 0.81503 1.01492 1.22712 0.93827 0.97592 1.02380 1.22321 0.93406 0.93886 1.00884 0.89522 1.21516 0.90951 0.89676 0.99576 0.90209 1.22527 1.02035 0.97857 1.01794 1.60146 1.10209 1.52657 1.06488 1.21685 0.90854 0.97746 0.97803 1.19748 0.83255 0.87153 0.86985 1.90538 1.78514 1.50050 1.26747 1.41935 1.14199 1.39338 1.25997 1.20532 0.96742 1.20729 1.13020 0.88345 1.26507 0.98254 1.01008 0.95488 1.70902 1.37240 1.25184 1.20791 0.83132 0.74972 0.74781 0.75387 1.20443 1.20961 1.21051 1.22203 0.77469 0.98512 1.01570 0.93824 0.93835 0.88995 0.90383 0.90426 0.91424 0.91401 0.89801 0.90229 0.92411 0.91979 0.92224 0.82874 0.93928 0.89719 0.79192 0.92818 0.91318 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.26 10.24 -55.14 -0.56 -4.83 16 3 C 0.05 0.45 5.61 36.01 0.20 0.65 16 4 C 0.53 7.03 7.93 -10.98 -0.09 6.94 16 5 O -0.51 -9.68 16.75 -14.35 -0.24 -9.92 16 6 N -0.62 -6.87 3.33 -170.47 -0.57 -7.44 16 7 C 0.10 0.64 6.49 -3.07 -0.02 0.62 16 8 C -0.13 -0.79 5.44 -24.89 -0.14 -0.93 16 9 C -0.09 -0.82 2.77 -88.45 -0.25 -1.06 16 10 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 11 C 0.09 1.00 2.10 -67.70 -0.14 0.86 16 12 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 13 C -0.18 -1.63 8.98 37.16 0.33 -1.29 16 14 N -0.66 -10.09 5.65 -107.99 -0.61 -10.70 16 15 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 16 C 0.44 10.53 7.82 -10.98 -0.09 10.44 16 17 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 18 N -0.58 -14.68 5.28 -10.96 -0.06 -14.73 16 19 C -0.38 -10.89 9.68 -14.93 -0.14 -11.04 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 22 N -0.90 -25.56 13.68 55.50 0.76 -24.80 16 23 Si 1.09 24.74 29.92 -169.99 -5.09 19.65 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.12 1.56 6.17 -2.49 -0.02 1.55 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 37 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 38 H 0.06 0.43 7.38 -51.93 -0.38 0.04 16 39 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.35 5.62 8.17 -39.29 -0.32 5.29 16 41 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 42 H 0.08 1.34 8.05 -51.93 -0.42 0.93 16 43 H 0.38 8.79 6.73 -40.82 -0.27 8.51 16 44 H 0.26 7.08 6.77 -40.82 -0.28 6.80 16 45 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 46 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -37.61 379.84 -7.41 -45.02 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.50 Total: 9.35 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 0.65 Total: 8.53 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.48 Total: -57.67 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.72 Total: -30.60 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.61 -7.41 -45.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754789851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.194 kcal (2) G-P(sol) polarization free energy of solvation -37.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds