Wall clock time and date at job start Tue Mar 31 2020 04:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00137 * 2 1 4 4 C 1.50705 * 109.46886 * 180.02562 * 3 2 1 5 5 O 1.21273 * 120.00083 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99516 * 179.97438 * 4 3 2 7 7 C 1.47013 * 125.65142 * 0.03135 * 6 4 3 8 8 C 1.54330 * 107.27284 * 178.90079 * 7 6 4 9 9 C 1.55159 * 102.93657 * 337.80239 * 8 7 6 10 10 H 1.09000 * 111.00620 * 277.38832 * 9 8 7 11 11 C 1.53003 * 110.99837 * 153.58037 * 9 8 7 12 12 H 1.08996 * 109.47189 * 303.17069 * 11 9 8 13 13 C 1.53001 * 109.47575 * 63.18196 * 11 9 8 14 14 N 1.46912 * 109.46713 * 183.17930 * 11 9 8 15 15 C 1.46896 * 110.99636 * 154.99789 * 14 11 9 16 16 C 1.50703 * 109.46774 * 179.97438 * 15 14 11 17 17 O 1.21292 * 119.99840 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99773 * 180.02562 * 16 15 14 19 19 C 1.37102 * 120.00039 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99610 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00384 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99833 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00108 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00199 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00192 * 23 21 19 27 27 C 1.47471 * 125.62458 * 179.97438 * 6 4 3 28 28 H 1.09000 * 109.47085 * 300.00046 * 1 2 3 29 29 H 1.08996 * 109.47181 * 59.99573 * 1 2 3 30 30 H 1.09004 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47244 * 60.00151 * 3 2 1 32 32 H 1.09004 * 109.47057 * 299.99615 * 3 2 1 33 33 H 1.08994 * 109.88856 * 59.47632 * 7 6 4 34 34 H 1.09001 * 110.01210 * 298.38404 * 7 6 4 35 35 H 1.09000 * 110.71539 * 219.44167 * 8 7 6 36 36 H 1.08994 * 110.72266 * 96.16418 * 8 7 6 37 37 H 1.08999 * 109.47225 * 179.97438 * 13 11 9 38 38 H 1.09003 * 109.46633 * 300.00074 * 13 11 9 39 39 H 1.08994 * 109.47269 * 59.99281 * 13 11 9 40 40 H 1.00899 * 110.99473 * 278.95135 * 14 11 9 41 41 H 1.09001 * 109.47275 * 60.00237 * 15 14 11 42 42 H 1.08996 * 109.47530 * 299.99593 * 15 14 11 43 43 H 0.96992 * 120.00503 * 359.97438 * 18 16 15 44 44 H 0.96993 * 119.99996 * 359.97438 * 22 21 19 45 45 H 1.09006 * 110.34818 * 85.32960 * 27 6 4 46 46 H 1.09003 * 110.40958 * 323.00043 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 8 4.0340 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 3.7780 3.6798 -0.0008 8 6 5.0088 4.6105 0.0265 9 6 6.1204 3.6994 0.6110 10 1 6.0688 3.6693 1.6993 11 6 7.5043 4.1538 0.1428 12 1 7.5343 4.1636 -0.9467 13 6 7.7857 5.5610 0.6735 14 7 8.5227 3.2256 0.6523 15 6 9.7199 3.2390 -0.1988 16 6 10.7401 2.2775 0.3543 17 8 10.4942 1.6439 1.3589 18 7 11.9261 2.1225 -0.2668 19 6 12.8545 1.2481 0.2366 20 1 12.6352 0.6833 1.1307 21 6 14.0770 1.0879 -0.4040 22 7 14.3436 1.7747 -1.4922 23 14 15.3421 -0.1028 0.2823 24 1 16.5526 -0.0891 -0.5778 25 1 14.7691 -1.4726 0.3095 26 1 15.7107 0.3069 1.6613 27 6 5.7509 2.3249 -0.0014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.1633 3.8520 0.8827 34 1 3.1927 3.8656 -0.9013 35 1 4.8303 5.4668 0.6768 36 1 5.2677 4.9370 -0.9807 37 1 8.7718 5.8845 0.3404 38 1 7.0300 6.2496 0.2956 39 1 7.7558 5.5511 1.7630 40 1 8.7578 3.4372 1.6104 41 1 10.1412 4.2441 -0.2176 42 1 9.4494 2.9394 -1.2113 43 1 12.1230 2.6294 -1.0700 44 1 13.6869 2.3933 -1.8483 45 1 6.1314 2.2485 -1.0200 46 1 6.1466 1.5168 0.6138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754789851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:52 Heat of formation + Delta-G solvation = -141.290651 kcal Electronic energy + Delta-G solvation = -25989.628650 eV Core-core repulsion = 22106.188896 eV Total energy + Delta-G solvation = -3883.439754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26201 -40.38632 -39.38699 -38.28530 -37.14065 -36.27600 -33.48730 -33.03156 -30.90956 -30.42623 -28.98539 -27.79619 -26.80270 -25.77206 -24.31634 -23.07972 -21.67036 -21.08899 -20.40888 -19.98860 -18.48424 -18.21411 -17.69448 -17.37096 -16.95740 -16.59218 -16.51501 -16.32943 -15.86829 -15.53350 -15.51022 -15.16539 -14.69944 -14.62301 -14.38042 -14.26157 -13.84138 -13.53268 -13.41422 -13.34019 -13.16142 -13.12164 -12.81566 -12.67921 -12.39542 -12.21323 -11.93169 -11.92747 -11.91939 -11.86328 -11.54506 -11.51125 -10.94819 -10.79009 -10.42443 -10.12451 -9.72302 -9.31247 -8.94446 -6.08100 1.48408 1.51049 1.52937 1.67719 1.81247 1.99693 2.39093 2.78027 2.99921 3.15010 3.31662 3.54508 3.61500 3.73878 3.93476 4.09870 4.10575 4.17920 4.31646 4.33539 4.36968 4.37817 4.39337 4.48124 4.51546 4.56126 4.59530 4.72503 4.85415 4.86823 4.92577 4.98824 5.00811 5.15695 5.21755 5.30699 5.41394 5.58435 5.93765 6.03989 6.04135 6.38144 6.46940 6.57063 6.73509 7.07397 7.42912 7.91930 8.53416 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.002413 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.235118 B =11602.410835 C =12833.281799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.057 3.943 4 C 0.510 3.490 5 O -0.589 6.589 6 N -0.619 5.619 7 C 0.090 3.910 8 C -0.115 4.115 9 C -0.077 4.077 10 H 0.080 0.920 11 C 0.095 3.905 12 H 0.088 0.912 13 C -0.175 4.175 14 N -0.684 5.684 15 C 0.069 3.931 16 C 0.439 3.561 17 O -0.620 6.620 18 N -0.587 5.587 19 C -0.411 4.411 20 H 0.070 0.930 21 C -0.043 4.043 22 N -0.915 5.915 23 Si 1.133 2.867 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.272 1.272 27 C 0.121 3.879 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.344 0.656 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.385 0.615 44 H 0.259 0.741 45 H 0.057 0.943 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.111 14.076 -0.307 31.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.022 4.022 4 C 0.300 3.700 5 O -0.469 6.469 6 N -0.354 5.354 7 C -0.031 4.031 8 C -0.153 4.153 9 C -0.097 4.097 10 H 0.098 0.902 11 C -0.015 4.015 12 H 0.106 0.894 13 C -0.234 4.234 14 N -0.316 5.316 15 C -0.063 4.063 16 C 0.227 3.773 17 O -0.505 6.505 18 N -0.226 5.226 19 C -0.540 4.540 20 H 0.089 0.911 21 C -0.241 4.241 22 N -0.555 5.555 23 Si 0.953 3.047 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.197 1.197 27 C -0.002 4.002 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.163 0.837 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.219 0.781 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -26.711 11.672 -0.198 29.150 hybrid contribution -0.789 1.331 0.119 1.552 sum -27.500 13.003 -0.079 30.419 Atomic orbital electron populations 1.23048 0.77994 1.04172 1.01862 1.87982 1.22460 1.27004 1.95810 1.22322 0.87970 0.86621 1.05323 1.20885 0.90388 0.82831 0.75906 1.90737 1.75995 1.28606 1.51514 1.48643 1.07229 1.07102 1.72402 1.22476 0.98092 0.78366 1.04148 1.22763 0.91572 0.97457 1.03470 1.22239 0.94176 0.92851 1.00437 0.90164 1.21640 0.89817 0.90031 0.99975 0.89436 1.22442 1.02614 0.96635 1.01695 1.60150 1.10132 1.55333 1.05987 1.21523 0.89798 0.96896 0.98103 1.21008 0.83497 0.86888 0.85907 1.90506 1.79393 1.51868 1.28756 1.41993 1.14590 1.39451 1.26615 1.20505 0.98326 1.22164 1.13010 0.91147 1.27824 0.99565 1.01667 0.95052 1.70968 1.37481 1.25739 1.21279 0.82637 0.73200 0.73311 0.75559 1.19507 1.20156 1.19685 1.22065 0.79061 0.98938 1.00127 0.91971 0.91877 0.88989 0.87168 0.87003 0.88916 0.88543 0.86839 0.88914 0.93146 0.88897 0.92389 0.83678 0.91107 0.88124 0.78085 0.92976 0.92423 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -9.38 10.24 -129.94 -1.33 -10.71 16 3 C 0.06 0.92 5.61 71.24 0.40 1.32 16 4 C 0.51 13.83 7.93 87.66 0.69 14.53 16 5 O -0.59 -23.97 16.75 16.03 0.27 -23.70 16 6 N -0.62 -13.16 3.33 -811.63 -2.70 -15.86 16 7 C 0.09 0.81 6.49 86.73 0.56 1.37 16 8 C -0.11 -0.92 5.44 31.79 0.17 -0.75 16 9 C -0.08 -1.36 2.77 -9.39 -0.03 -1.39 16 10 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 11 C 0.10 1.85 2.10 44.91 0.09 1.94 16 12 H 0.09 1.59 7.79 -2.39 -0.02 1.58 16 13 C -0.18 -2.54 8.98 71.98 0.65 -1.90 16 14 N -0.68 -20.85 5.65 -495.56 -2.80 -23.65 16 15 C 0.07 2.33 5.97 85.56 0.51 2.84 16 16 C 0.44 21.42 7.82 87.66 0.69 22.11 16 17 O -0.62 -35.83 15.78 -3.07 -0.05 -35.88 16 18 N -0.59 -30.64 5.28 -306.98 -1.62 -32.26 16 19 C -0.41 -24.21 9.68 84.04 0.81 -23.39 16 20 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 21 C -0.04 -2.39 5.50 84.93 0.47 -1.92 16 22 N -0.92 -51.97 13.68 21.66 0.30 -51.67 16 23 Si 1.13 49.98 29.92 68.60 2.05 52.03 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 C 0.12 3.15 6.17 86.85 0.54 3.69 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.11 0.36 8.12 -2.39 -0.02 0.34 16 36 H 0.09 0.58 8.04 -2.39 -0.02 0.56 16 37 H 0.05 0.83 7.45 -2.39 -0.02 0.81 16 38 H 0.09 0.81 7.38 -2.39 -0.02 0.79 16 39 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 40 H 0.34 11.20 8.17 -89.69 -0.73 10.46 16 41 H 0.07 2.01 7.44 -2.39 -0.02 1.99 16 42 H 0.10 3.09 8.05 -2.39 -0.02 3.07 16 43 H 0.38 18.29 6.73 -92.71 -0.62 17.67 16 44 H 0.26 14.19 6.77 -92.71 -0.63 13.56 16 45 H 0.06 1.59 8.03 -2.38 -0.02 1.57 16 46 H 0.04 1.39 8.04 -2.39 -0.02 1.37 16 Total: -1.00 -89.54 379.84 0.69 -88.85 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.23 Total: 32.85 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 6.80 Total: 19.99 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -6.83 Total: -123.44 kcal Atomic # 8 Polarization: -69.18 SS G_CDS: -1.11 Total: -70.29 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -89.54 0.69 -88.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754789851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.439 kcal (2) G-P(sol) polarization free energy of solvation -89.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds