Wall clock time and date at job start Tue Mar 31 2020 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99933 * 2 1 4 4 C 1.50697 * 109.47103 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00148 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00177 * 180.02562 * 4 3 2 7 7 C 1.47031 * 125.64646 * 0.02562 * 6 4 3 8 8 C 1.54327 * 107.26879 * 181.04030 * 7 6 4 9 9 C 1.55156 * 102.94181 * 22.19441 * 8 7 6 10 10 H 1.08999 * 111.00338 * 82.57390 * 9 8 7 11 11 C 1.53004 * 111.00038 * 206.38478 * 9 8 7 12 12 H 1.08994 * 109.47365 * 59.99650 * 11 9 8 13 13 C 1.53002 * 109.46883 * 299.99950 * 11 9 8 14 14 N 1.46902 * 109.46864 * 180.02562 * 11 9 8 15 15 C 1.46900 * 110.99509 * 204.99972 * 14 11 9 16 16 C 1.50704 * 109.46994 * 180.02562 * 15 14 11 17 17 O 1.21295 * 119.99789 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99991 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99922 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00036 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00017 * 180.02562 * 19 18 16 22 22 N 1.31402 * 119.99798 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99696 * 179.97438 * 21 19 18 24 24 H 1.48489 * 109.47395 * 359.97438 * 23 21 19 25 25 H 1.48509 * 109.46842 * 119.99836 * 23 21 19 26 26 H 1.48497 * 109.46862 * 239.99667 * 23 21 19 27 27 C 1.47422 * 125.65218 * 179.97438 * 6 4 3 28 28 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46935 * 299.99653 * 1 2 3 30 30 H 1.09000 * 109.47202 * 60.00055 * 1 2 3 31 31 H 1.08998 * 109.46826 * 60.00277 * 3 2 1 32 32 H 1.09000 * 109.47406 * 299.99947 * 3 2 1 33 33 H 1.08998 * 109.88059 * 61.62395 * 7 6 4 34 34 H 1.08994 * 109.87878 * 300.45675 * 7 6 4 35 35 H 1.09001 * 110.71763 * 140.55775 * 8 7 6 36 36 H 1.08997 * 110.71798 * 263.82943 * 8 7 6 37 37 H 1.09004 * 109.47250 * 299.99617 * 13 11 9 38 38 H 1.09003 * 109.47201 * 60.00240 * 13 11 9 39 39 H 1.09003 * 109.46909 * 180.02562 * 13 11 9 40 40 H 1.00899 * 110.99647 * 328.94773 * 14 11 9 41 41 H 1.09006 * 109.47436 * 299.99820 * 15 14 11 42 42 H 1.09004 * 109.47438 * 60.00148 * 15 14 11 43 43 H 0.96996 * 120.00384 * 359.97438 * 18 16 15 44 44 H 0.97004 * 119.99856 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.36378 * 37.05323 * 27 6 4 46 46 H 1.09001 * 110.46274 * 274.77499 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2968 -0.0002 7 6 3.7778 3.6800 0.0014 8 6 5.0086 4.6107 -0.0255 9 6 6.1198 3.7004 -0.6118 10 1 6.0672 3.6712 -1.7001 11 6 7.5041 4.1548 -0.1447 12 1 7.5534 4.1099 0.9432 13 6 7.7522 5.5919 -0.6075 14 7 8.5287 3.2723 -0.7186 15 6 9.7407 3.2634 0.1114 16 6 10.7669 2.3499 -0.5078 17 8 10.5134 1.7635 -1.5389 18 7 11.9664 2.1845 0.0841 19 6 12.8998 1.3530 -0.4790 20 1 12.6738 0.8302 -1.3966 21 6 14.1363 1.1820 0.1315 22 7 14.4111 1.8176 1.2483 23 14 15.4077 0.0485 -0.6354 24 1 14.8561 -0.5438 -1.8802 25 1 16.6328 0.8241 -0.9562 26 1 15.7449 -1.0361 0.3212 27 6 5.7504 2.3257 -0.0002 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.1945 3.8627 0.9038 34 1 3.1627 3.8532 -0.8816 35 1 4.8297 5.4678 -0.6746 36 1 5.2681 4.9360 0.9819 37 1 7.7030 5.6369 -1.6955 38 1 6.9919 6.2470 -0.1819 39 1 8.7386 5.9155 -0.2750 40 1 8.1707 2.3376 -0.8458 41 1 10.1452 4.2737 0.1747 42 1 9.4935 2.9077 1.1117 43 1 12.1693 2.6536 0.9084 44 1 15.2744 1.6986 1.6743 45 1 6.1456 1.5180 -0.6163 46 1 6.1330 2.2478 1.0174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754789853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:56 Heat of formation + Delta-G solvation = -111.703657 kcal Electronic energy + Delta-G solvation = -25951.883318 eV Core-core repulsion = 22069.726553 eV Total energy + Delta-G solvation = -3882.156766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48716 -38.84692 -38.12793 -37.42211 -35.84008 -33.88928 -32.32595 -31.17789 -30.03157 -29.77785 -28.38557 -26.48984 -26.15488 -24.15749 -23.55368 -22.03856 -20.20863 -19.74063 -19.16130 -17.88862 -17.67289 -17.14372 -16.70388 -16.46249 -15.69571 -15.56433 -15.31949 -14.94093 -14.47430 -14.42223 -14.10501 -13.91854 -13.82560 -13.51053 -13.34876 -12.93303 -12.82889 -12.59490 -12.39335 -12.22669 -11.93302 -11.86019 -11.81549 -11.56319 -11.35710 -11.16397 -11.04890 -10.97384 -10.63521 -10.31390 -10.22102 -10.19214 -10.00446 -9.48923 -8.94574 -8.42585 -8.06379 -7.92894 -6.38883 -3.79362 2.35198 2.36285 3.19096 3.29468 3.37248 3.54591 3.92891 3.98255 4.15697 4.18031 4.29913 4.46011 4.57086 4.62763 4.73465 4.83362 4.89361 4.94516 5.00882 5.03714 5.18789 5.25854 5.26640 5.27301 5.34946 5.43315 5.51179 5.58243 5.67755 5.77305 5.81484 5.86437 5.98428 6.02353 6.06047 6.26227 6.36443 6.57301 7.18427 7.24638 7.58603 7.66176 7.91634 8.09861 8.64466 9.21255 9.57576 10.09119 10.79004 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.018045 B = 0.002384 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.333050 B =11742.447116 C =12941.870933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.050 3.950 4 C 0.526 3.474 5 O -0.513 6.513 6 N -0.619 5.619 7 C 0.097 3.903 8 C -0.123 4.123 9 C -0.101 4.101 10 H 0.097 0.903 11 C 0.095 3.905 12 H 0.045 0.955 13 C -0.140 4.140 14 N -0.665 5.665 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.106 3.894 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.350 0.650 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.392 0.608 44 H 0.270 0.730 45 H 0.085 0.915 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.573 9.438 1.777 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.030 4.030 4 C 0.313 3.687 5 O -0.387 6.387 6 N -0.356 5.356 7 C -0.026 4.026 8 C -0.161 4.161 9 C -0.121 4.121 10 H 0.116 0.884 11 C -0.015 4.015 12 H 0.063 0.937 13 C -0.197 4.197 14 N -0.299 5.299 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.016 4.016 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.170 0.830 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.999 8.630 0.762 27.404 hybrid contribution 0.322 -0.397 1.050 1.168 sum -25.677 8.233 1.812 27.025 Atomic orbital electron populations 1.22847 0.80256 1.03458 1.00087 1.88034 1.19866 1.25151 1.95401 1.22189 0.91398 0.86964 1.02470 1.19906 0.88351 0.83345 0.77073 1.90782 1.74394 1.25719 1.47824 1.48389 1.07364 1.05633 1.74202 1.22131 0.97593 0.81164 1.01686 1.22687 0.93339 0.97626 1.02486 1.22579 0.94244 0.93497 1.01750 0.88449 1.21474 0.88971 0.94488 0.96601 0.93715 1.21808 1.01359 0.94323 1.02255 1.60166 1.04548 1.15652 1.49529 1.21723 0.91565 1.00601 0.94306 1.19820 0.83884 0.86490 0.87186 1.90531 1.79354 1.51576 1.25128 1.41868 1.12233 1.41592 1.24445 1.19760 0.93121 1.21337 1.08486 0.87864 1.25262 0.98375 0.98337 0.96069 1.69618 1.23985 1.42846 1.17943 0.85799 0.79942 0.79483 0.79123 1.19206 1.20772 1.20784 1.22382 0.79177 0.98594 1.01441 0.88963 0.93798 0.93765 0.90320 0.90255 0.91242 0.91165 0.89399 0.90120 0.91813 0.92728 0.92420 0.82980 0.89568 0.93890 0.77492 0.91968 0.89646 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.08 10.24 -55.14 -0.56 -4.64 16 3 C 0.05 0.43 5.61 36.00 0.20 0.63 16 4 C 0.53 6.63 7.93 -10.99 -0.09 6.54 16 5 O -0.51 -9.20 16.76 -14.35 -0.24 -9.44 16 6 N -0.62 -6.35 3.33 -170.50 -0.57 -6.92 16 7 C 0.10 0.59 6.49 -3.06 -0.02 0.57 16 8 C -0.12 -0.75 5.29 -24.90 -0.13 -0.88 16 9 C -0.10 -0.95 2.67 -88.46 -0.24 -1.19 16 10 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 11 C 0.10 1.06 2.18 -67.71 -0.15 0.92 16 12 H 0.04 0.49 7.73 -51.93 -0.40 0.08 16 13 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 14 N -0.67 -10.53 5.93 -107.98 -0.64 -11.17 16 15 C 0.05 0.89 5.96 -4.97 -0.03 0.86 16 16 C 0.44 10.58 7.82 -10.98 -0.09 10.50 16 17 O -0.58 -16.14 15.78 5.54 0.09 -16.06 16 18 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 23 Si 0.93 21.46 29.55 -169.99 -5.02 16.43 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.11 1.21 5.68 -2.52 -0.01 1.20 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.41 8.11 -51.93 -0.42 -0.01 16 36 H 0.08 0.45 8.04 -51.93 -0.42 0.04 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.41 7.28 -51.93 -0.38 0.03 16 39 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 40 H 0.35 5.92 7.03 -39.29 -0.28 5.64 16 41 H 0.09 1.40 7.44 -51.93 -0.39 1.01 16 42 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 43 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.09 1.18 7.64 -51.93 -0.40 0.79 16 46 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -36.35 379.64 -7.43 -43.79 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.53 Total: 9.77 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 0.66 Total: 11.26 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.54 Total: -56.85 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.72 Total: -30.13 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.35 -7.43 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754789853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.918 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds