Wall clock time and date at job start Tue Mar 31 2020 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99933 * 2 1 4 4 C 1.50697 * 109.47103 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00148 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00177 * 180.02562 * 4 3 2 7 7 C 1.47031 * 125.64646 * 0.02562 * 6 4 3 8 8 C 1.54327 * 107.26879 * 181.04030 * 7 6 4 9 9 C 1.55156 * 102.94181 * 22.19441 * 8 7 6 10 10 H 1.08999 * 111.00338 * 82.57390 * 9 8 7 11 11 C 1.53004 * 111.00038 * 206.38478 * 9 8 7 12 12 H 1.08994 * 109.47365 * 59.99650 * 11 9 8 13 13 C 1.53002 * 109.46883 * 299.99950 * 11 9 8 14 14 N 1.46902 * 109.46864 * 180.02562 * 11 9 8 15 15 C 1.46900 * 110.99509 * 204.99972 * 14 11 9 16 16 C 1.50704 * 109.46994 * 180.02562 * 15 14 11 17 17 O 1.21295 * 119.99789 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99991 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99922 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00036 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00017 * 180.02562 * 19 18 16 22 22 N 1.31402 * 119.99798 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99696 * 179.97438 * 21 19 18 24 24 H 1.48489 * 109.47395 * 359.97438 * 23 21 19 25 25 H 1.48509 * 109.46842 * 119.99836 * 23 21 19 26 26 H 1.48497 * 109.46862 * 239.99667 * 23 21 19 27 27 C 1.47422 * 125.65218 * 179.97438 * 6 4 3 28 28 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46935 * 299.99653 * 1 2 3 30 30 H 1.09000 * 109.47202 * 60.00055 * 1 2 3 31 31 H 1.08998 * 109.46826 * 60.00277 * 3 2 1 32 32 H 1.09000 * 109.47406 * 299.99947 * 3 2 1 33 33 H 1.08998 * 109.88059 * 61.62395 * 7 6 4 34 34 H 1.08994 * 109.87878 * 300.45675 * 7 6 4 35 35 H 1.09001 * 110.71763 * 140.55775 * 8 7 6 36 36 H 1.08997 * 110.71798 * 263.82943 * 8 7 6 37 37 H 1.09004 * 109.47250 * 299.99617 * 13 11 9 38 38 H 1.09003 * 109.47201 * 60.00240 * 13 11 9 39 39 H 1.09003 * 109.46909 * 180.02562 * 13 11 9 40 40 H 1.00899 * 110.99647 * 328.94773 * 14 11 9 41 41 H 1.09006 * 109.47436 * 299.99820 * 15 14 11 42 42 H 1.09004 * 109.47438 * 60.00148 * 15 14 11 43 43 H 0.96996 * 120.00384 * 359.97438 * 18 16 15 44 44 H 0.97004 * 119.99856 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.36378 * 37.05323 * 27 6 4 46 46 H 1.09001 * 110.46274 * 274.77499 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2968 -0.0002 7 6 3.7778 3.6800 0.0014 8 6 5.0086 4.6107 -0.0255 9 6 6.1198 3.7004 -0.6118 10 1 6.0672 3.6712 -1.7001 11 6 7.5041 4.1548 -0.1447 12 1 7.5534 4.1099 0.9432 13 6 7.7522 5.5919 -0.6075 14 7 8.5287 3.2723 -0.7186 15 6 9.7407 3.2634 0.1114 16 6 10.7669 2.3499 -0.5078 17 8 10.5134 1.7635 -1.5389 18 7 11.9664 2.1845 0.0841 19 6 12.8998 1.3530 -0.4790 20 1 12.6738 0.8302 -1.3966 21 6 14.1363 1.1820 0.1315 22 7 14.4111 1.8176 1.2483 23 14 15.4077 0.0485 -0.6354 24 1 14.8561 -0.5438 -1.8802 25 1 16.6328 0.8241 -0.9562 26 1 15.7449 -1.0361 0.3212 27 6 5.7504 2.3257 -0.0002 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.1945 3.8627 0.9038 34 1 3.1627 3.8532 -0.8816 35 1 4.8297 5.4678 -0.6746 36 1 5.2681 4.9360 0.9819 37 1 7.7030 5.6369 -1.6955 38 1 6.9919 6.2470 -0.1819 39 1 8.7386 5.9155 -0.2750 40 1 8.1707 2.3376 -0.8458 41 1 10.1452 4.2737 0.1747 42 1 9.4935 2.9077 1.1117 43 1 12.1693 2.6536 0.9084 44 1 15.2744 1.6986 1.6743 45 1 6.1456 1.5180 -0.6163 46 1 6.1330 2.2478 1.0174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754789853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:56 Heat of formation + Delta-G solvation = -140.583602 kcal Electronic energy + Delta-G solvation = -25953.135647 eV Core-core repulsion = 22069.726553 eV Total energy + Delta-G solvation = -3883.409094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32606 -40.24480 -39.40233 -38.27882 -36.96756 -35.92833 -33.48920 -33.15146 -30.93491 -30.49775 -29.05037 -28.04330 -26.80970 -25.88020 -24.31047 -22.90174 -21.25198 -20.89963 -20.47443 -19.91213 -18.50599 -18.11917 -17.61407 -17.37442 -17.04447 -16.51631 -16.44002 -16.27429 -16.10804 -15.64326 -15.25042 -15.12977 -14.73613 -14.66069 -14.31511 -14.21986 -13.71333 -13.54702 -13.40414 -13.33022 -13.16117 -13.12053 -12.91756 -12.59518 -12.44836 -12.40418 -12.30661 -12.13475 -11.91399 -11.73355 -11.53829 -11.47439 -10.97260 -10.78965 -10.36331 -10.03495 -9.77010 -9.33914 -8.48810 -5.97473 1.34848 1.39946 1.45667 1.54493 1.62685 2.02969 2.27707 2.86825 2.98752 3.18209 3.39102 3.47427 3.58640 3.69768 3.83982 4.10968 4.18151 4.24958 4.29501 4.35037 4.38969 4.42057 4.48016 4.48810 4.56500 4.59025 4.63289 4.68498 4.81983 4.86053 4.94464 5.00954 5.03671 5.14942 5.22446 5.34777 5.39263 5.51613 5.90484 6.02989 6.13160 6.36854 6.41994 6.58257 7.03727 7.10791 7.53991 8.09828 8.68841 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.018045 B = 0.002384 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.333050 B =11742.447116 C =12941.870933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.056 3.944 4 C 0.512 3.488 5 O -0.586 6.586 6 N -0.615 5.615 7 C 0.090 3.910 8 C -0.113 4.113 9 C -0.092 4.092 10 H 0.087 0.913 11 C 0.095 3.905 12 H 0.056 0.944 13 C -0.135 4.135 14 N -0.682 5.682 15 C 0.066 3.934 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.076 0.924 21 C -0.014 4.014 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.275 1.275 25 H -0.268 1.268 26 H -0.270 1.270 27 C 0.102 3.898 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.339 0.661 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.045 0.955 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.439 12.108 2.665 31.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.023 4.023 4 C 0.302 3.698 5 O -0.466 6.466 6 N -0.350 5.350 7 C -0.030 4.030 8 C -0.151 4.151 9 C -0.111 4.111 10 H 0.105 0.895 11 C -0.015 4.015 12 H 0.074 0.926 13 C -0.193 4.193 14 N -0.315 5.315 15 C -0.066 4.066 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.200 1.200 25 H -0.193 1.193 26 H -0.196 1.196 27 C -0.021 4.021 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.157 0.843 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.892 11.393 1.680 30.176 hybrid contribution 0.859 -1.190 0.773 1.659 sum -27.034 10.203 2.453 28.999 Atomic orbital electron populations 1.23046 0.77983 1.04175 1.01865 1.87979 1.22455 1.26966 1.95816 1.22321 0.87937 0.86661 1.05391 1.20870 0.90382 0.82751 0.75790 1.90739 1.75925 1.28500 1.51419 1.48524 1.06688 1.07215 1.72595 1.22509 0.98062 0.78184 1.04295 1.22747 0.91332 0.97512 1.03462 1.22446 0.94540 0.93075 1.01082 0.89491 1.21638 0.88464 0.94249 0.97106 0.92605 1.21804 1.02026 0.93695 1.01783 1.60227 1.05319 1.15704 1.50243 1.21575 0.90602 0.99758 0.94657 1.20966 0.84184 0.86135 0.86433 1.90496 1.80184 1.53328 1.27164 1.41933 1.12691 1.41667 1.24732 1.19690 0.94859 1.23172 1.08659 0.90548 1.26047 0.99550 0.99350 0.96376 1.69671 1.24763 1.43191 1.18373 0.84868 0.77541 0.77830 0.78069 1.20006 1.19328 1.19559 1.22294 0.80524 0.98791 1.00472 0.88990 0.91871 0.91987 0.86943 0.87154 0.88381 0.88778 0.86791 0.88831 0.92812 0.89147 0.93467 0.84261 0.87493 0.91904 0.76919 0.91246 0.93598 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.51 16 2 O -0.41 -8.94 10.24 -129.94 -1.33 -10.27 16 3 C 0.06 0.85 5.61 71.24 0.40 1.25 16 4 C 0.51 13.00 7.93 87.66 0.69 13.69 16 5 O -0.59 -22.55 16.76 16.02 0.27 -22.28 16 6 N -0.62 -12.04 3.33 -811.75 -2.70 -14.74 16 7 C 0.09 0.74 6.49 86.73 0.56 1.30 16 8 C -0.11 -0.90 5.29 31.78 0.17 -0.73 16 9 C -0.09 -1.60 2.67 -9.39 -0.03 -1.62 16 10 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 11 C 0.09 1.97 2.18 44.92 0.10 2.07 16 12 H 0.06 1.08 7.73 -2.39 -0.02 1.06 16 13 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 14 N -0.68 -21.79 5.93 -495.55 -2.94 -24.73 16 15 C 0.07 2.34 5.96 85.56 0.51 2.85 16 16 C 0.44 21.57 7.82 87.66 0.69 22.26 16 17 O -0.63 -36.35 15.78 -3.08 -0.05 -36.40 16 18 N -0.57 -30.39 5.29 -306.97 -1.62 -32.01 16 19 C -0.33 -19.63 9.68 84.04 0.81 -18.81 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 23 Si 0.99 44.22 29.55 68.60 2.03 46.24 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 C 0.10 2.40 5.68 86.86 0.49 2.90 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.11 0.42 8.11 -2.39 -0.02 0.40 16 36 H 0.09 0.58 8.04 -2.39 -0.02 0.56 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 0.94 7.28 -2.39 -0.02 0.93 16 39 H 0.05 0.93 7.45 -2.39 -0.02 0.92 16 40 H 0.34 12.09 7.03 -89.69 -0.63 11.46 16 41 H 0.11 3.34 7.44 -2.38 -0.02 3.32 16 42 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 43 H 0.40 19.84 7.90 -92.71 -0.73 19.10 16 44 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.05 1.42 7.64 -2.39 -0.02 1.40 16 46 H 0.06 1.54 7.98 -2.39 -0.02 1.52 16 Total: -1.00 -85.46 379.64 0.34 -85.12 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.37 Total: 34.61 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 6.78 Total: 24.68 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -6.98 Total: -121.70 kcal Atomic # 8 Polarization: -67.84 SS G_CDS: -1.11 Total: -68.95 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -85.46 0.34 -85.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754789853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.461 kcal (2) G-P(sol) polarization free energy of solvation -85.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds