Wall clock time and date at job start Tue Mar 31 2020 04:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47088 * 2 1 4 4 C 1.50697 * 109.47182 * 120.00386 * 2 1 3 5 5 O 1.21279 * 120.00586 * 92.84651 * 4 2 1 6 6 N 1.34786 * 119.99585 * 272.84793 * 4 2 1 7 7 C 1.46496 * 120.00267 * 4.89828 * 6 4 2 8 8 C 1.53001 * 109.47045 * 97.40005 * 7 6 4 9 9 O 1.42897 * 109.46579 * 66.71394 * 8 7 6 10 10 C 1.46494 * 119.99594 * 184.90075 * 6 4 2 11 11 C 1.52997 * 109.47552 * 90.00013 * 10 6 4 12 12 N 1.46504 * 109.47395 * 179.97438 * 11 10 6 13 13 C 1.36935 * 119.99634 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00587 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99444 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00204 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99630 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47462 * 60.00139 * 17 15 13 19 19 H 1.48508 * 109.46841 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47309 * 299.99382 * 17 15 13 21 21 C 1.52999 * 109.46678 * 240.00187 * 2 1 3 22 22 H 1.08997 * 110.21874 * 298.06605 * 21 2 1 23 23 C 1.54479 * 110.24915 * 60.00239 * 21 2 1 24 24 C 1.54629 * 101.76869 * 144.50090 * 23 21 2 25 25 C 1.51287 * 104.19192 * 335.20376 * 24 23 21 26 26 O 1.21283 * 124.93916 * 196.23179 * 25 24 23 27 27 N 1.34418 * 110.11931 * 16.49450 * 25 24 23 28 28 H 1.08994 * 109.46862 * 313.12772 * 1 2 3 29 29 H 1.08996 * 109.47072 * 73.12742 * 1 2 3 30 30 H 1.08998 * 109.46875 * 193.13464 * 1 2 3 31 31 H 1.08993 * 109.47411 * 217.40313 * 7 6 4 32 32 H 1.09002 * 109.47208 * 337.40281 * 7 6 4 33 33 H 1.09003 * 109.46866 * 186.70882 * 8 7 6 34 34 H 1.08996 * 109.47100 * 306.70927 * 8 7 6 35 35 H 0.96705 * 113.99734 * 180.02562 * 9 8 7 36 36 H 1.09010 * 109.47267 * 210.00023 * 10 6 4 37 37 H 1.09006 * 109.47588 * 329.99546 * 10 6 4 38 38 H 1.08997 * 109.47051 * 300.00024 * 11 10 6 39 39 H 1.08996 * 109.47040 * 59.99306 * 11 10 6 40 40 H 0.96991 * 120.00146 * 0.02562 * 12 11 10 41 41 H 0.97006 * 119.99917 * 180.02562 * 16 15 13 42 42 H 1.08999 * 110.96654 * 26.37709 * 23 21 2 43 43 H 1.08999 * 110.99659 * 262.63657 * 23 21 2 44 44 H 1.08992 * 110.48896 * 216.52197 * 24 23 21 45 45 H 1.09001 * 110.59501 * 93.93145 * 24 23 21 46 46 H 0.96996 * 124.34867 * 180.16896 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.2838 -1.8961 1.1860 6 7 2.2023 -0.0282 2.3803 7 6 1.7982 1.3774 2.4647 8 6 0.4101 1.4716 3.1014 9 8 0.4826 1.0526 4.4657 10 6 2.7913 -0.6922 3.5457 11 6 4.3112 -0.5193 3.5174 12 7 4.9001 -1.1829 4.6832 13 6 6.2564 -1.1613 4.8708 14 1 6.8920 -0.6554 4.1591 15 6 6.8143 -1.7905 5.9751 16 7 6.0398 -2.4074 6.8422 17 14 8.6645 -1.7604 6.2314 18 1 9.1252 -0.3537 6.3493 19 1 9.0040 -2.4978 7.4750 20 1 9.3351 -2.4057 5.0741 21 6 2.0400 -0.7212 -1.2493 22 1 1.7118 -1.7606 -1.2445 23 6 1.5349 -0.0070 -2.5225 24 6 2.7360 -0.1831 -3.4804 25 6 3.9232 -0.3563 -2.5587 26 8 5.0838 -0.2454 -2.8927 27 7 3.5046 -0.6567 -1.3171 28 1 -0.3633 0.7025 0.7500 29 1 -0.3633 0.2983 -0.9834 30 1 -0.3633 -1.0008 0.2335 31 1 2.5158 1.9258 3.0748 32 1 1.7686 1.8077 1.4636 33 1 0.0589 2.5025 3.0561 34 1 -0.2825 0.8275 2.5598 35 1 -0.3634 1.0861 4.9329 36 1 2.3920 -0.2478 4.4575 37 1 2.5459 -1.7541 3.5215 38 1 4.7105 -0.9637 2.6058 39 1 4.5565 0.5424 3.5416 40 1 4.3294 -1.6381 5.3218 41 1 6.4298 -2.8468 7.6141 42 1 1.3428 1.0481 -2.3277 43 1 0.6453 -0.4968 -2.9183 44 1 2.8616 0.7035 -4.1018 45 1 2.6037 -1.0683 -4.1025 46 1 4.0947 -0.8087 -0.5625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754891502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:43 Heat of formation + Delta-G solvation = -106.910628 kcal Electronic energy + Delta-G solvation = -27298.734353 eV Core-core repulsion = 23416.785429 eV Total energy + Delta-G solvation = -3881.948924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.02419 -39.71903 -37.41539 -36.82934 -35.56319 -34.44132 -33.34776 -31.55972 -31.31632 -29.53330 -27.63596 -27.07177 -24.83053 -23.41265 -23.17460 -21.81592 -20.90397 -20.62324 -18.86622 -18.13213 -17.45576 -17.24173 -17.06114 -16.43121 -16.11278 -15.49105 -14.94588 -14.76804 -14.52736 -14.11825 -13.90674 -13.81881 -13.74843 -13.46020 -13.24949 -13.16750 -13.11127 -12.82624 -12.50202 -12.40751 -12.27550 -11.93932 -11.62887 -11.57438 -11.29153 -11.17331 -10.87187 -10.85080 -10.57695 -10.20099 -10.09450 -9.98507 -9.74711 -9.59342 -9.23650 -8.81441 -8.53071 -6.87656 -5.70615 -2.99648 2.48630 2.58789 2.95441 3.21674 3.49459 3.53088 3.54908 3.92698 3.99828 4.09663 4.23265 4.39204 4.65187 4.66611 4.72470 4.77714 4.81226 4.90271 4.92049 5.05162 5.24540 5.27301 5.28482 5.31358 5.43979 5.47384 5.54614 5.60111 5.69124 5.78920 5.82970 5.95950 6.10224 6.26303 6.55559 6.67196 6.78416 6.93814 6.95977 7.40051 7.52777 7.75012 8.14067 8.19528 8.47909 9.58811 10.15473 10.50696 11.52238 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.003858 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.118828 B = 7256.347492 C = 9161.707103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 H 0.099 0.901 4 C 0.510 3.490 5 O -0.529 6.529 6 N -0.596 5.596 7 C 0.101 3.899 8 C 0.057 3.943 9 O -0.561 6.561 10 C 0.108 3.892 11 C 0.144 3.856 12 N -0.728 5.728 13 C -0.238 4.238 14 H 0.069 0.931 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.147 3.853 22 H 0.095 0.905 23 C -0.127 4.127 24 C -0.156 4.156 25 C 0.516 3.484 26 O -0.537 6.537 27 N -0.722 5.722 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.377 0.623 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.716 10.660 -17.321 29.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 H 0.117 0.883 4 C 0.297 3.703 5 O -0.405 6.405 6 N -0.328 5.328 7 C -0.022 4.022 8 C -0.022 4.022 9 O -0.366 6.366 10 C -0.014 4.014 11 C 0.016 3.984 12 N -0.373 5.373 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.041 3.959 22 H 0.113 0.887 23 C -0.165 4.165 24 C -0.196 4.196 25 C 0.302 3.698 26 O -0.413 6.413 27 N -0.378 5.378 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.224 0.776 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.035 0.965 39 H 0.033 0.967 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -19.219 10.033 -17.779 28.038 hybrid contribution 0.455 -0.027 1.027 1.124 sum -18.764 10.007 -16.751 27.071 Atomic orbital electron populations 1.21828 0.91578 1.03516 1.03264 1.21766 0.98480 1.01062 0.93304 0.88283 1.20500 0.78074 0.87457 0.84305 1.90758 1.50566 1.14971 1.84242 1.47834 1.61038 1.11404 1.12508 1.21780 0.95749 0.83205 1.01500 1.22774 0.97496 0.98233 0.83731 1.86612 1.36645 1.89934 1.23426 1.21781 0.94064 0.98634 0.86943 1.20883 0.90401 0.95558 0.91585 1.42177 1.04959 1.64871 1.25303 1.19164 0.83296 1.28617 1.05893 0.91314 1.24734 0.97843 1.00730 0.97584 1.69655 1.33812 1.40367 1.14374 0.86251 0.85324 0.77436 0.77085 1.21272 1.21635 1.21229 1.21547 0.80217 1.00700 0.93432 0.88710 1.22725 0.98173 1.01943 0.93672 1.22356 0.93607 1.05217 0.98437 1.20874 0.89913 0.75326 0.83661 1.90774 1.20176 1.51732 1.78650 1.46381 1.08045 1.71204 1.12126 0.91479 0.90705 0.91399 0.89134 0.88780 0.92810 0.93285 0.77576 0.88984 0.90070 0.96520 0.96658 0.78219 0.93469 0.89606 0.88801 0.88021 0.87716 0.74571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.16 37.16 0.34 -0.43 16 2 C -0.12 -1.01 1.64 -91.77 -0.15 -1.16 16 3 H 0.10 0.66 6.10 -51.93 -0.32 0.35 16 4 C 0.51 6.75 6.16 -10.98 -0.07 6.68 16 5 O -0.53 -9.33 15.66 5.56 0.09 -9.25 16 6 N -0.60 -7.99 2.48 -173.69 -0.43 -8.42 16 7 C 0.10 0.96 5.67 -4.04 -0.02 0.94 16 8 C 0.06 0.43 7.04 37.16 0.26 0.70 16 9 O -0.56 -5.76 11.91 -35.23 -0.42 -6.18 16 10 C 0.11 1.93 5.41 -4.05 -0.02 1.91 16 11 C 0.14 3.16 6.58 -4.04 -0.03 3.14 16 12 N -0.73 -19.71 5.60 -59.91 -0.34 -20.04 16 13 C -0.24 -7.06 9.99 -15.06 -0.15 -7.21 16 14 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -29.24 13.06 55.49 0.72 -28.51 16 17 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 C 0.15 1.26 2.62 -67.01 -0.18 1.08 16 22 H 0.10 0.91 7.82 -51.93 -0.41 0.51 16 23 C -0.13 -0.64 5.33 -25.10 -0.13 -0.77 16 24 C -0.16 -1.12 6.86 -26.74 -0.18 -1.30 16 25 C 0.52 6.46 8.43 -10.86 -0.09 6.37 16 26 O -0.54 -9.30 18.03 5.56 0.10 -9.20 16 27 N -0.72 -8.57 5.76 -52.76 -0.30 -8.88 16 28 H 0.07 0.30 5.55 -51.93 -0.29 0.01 16 29 H 0.07 0.23 6.80 -51.93 -0.35 -0.13 16 30 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 31 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.09 0.60 5.54 -51.93 -0.29 0.31 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.33 6.17 -51.93 -0.32 0.01 16 35 H 0.38 2.21 9.12 45.56 0.42 2.62 16 36 H 0.09 1.66 6.50 -51.92 -0.34 1.32 16 37 H 0.08 1.63 7.36 -51.93 -0.38 1.24 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 10.82 7.67 -40.82 -0.31 10.51 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 42 H 0.09 0.31 7.86 -51.93 -0.41 -0.10 16 43 H 0.09 0.27 8.13 -51.93 -0.42 -0.15 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.41 5.86 8.55 -40.82 -0.35 5.51 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -39.31 369.97 -6.81 -46.12 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.27 Total: 11.01 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.52 Total: 9.44 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.35 Total: -65.85 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.23 Total: -24.63 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.31 -6.81 -46.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754891502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.788 kcal (2) G-P(sol) polarization free energy of solvation -39.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds