Wall clock time and date at job start Tue Mar 31 2020 04:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46910 * 2 1 4 4 C 1.50695 * 109.47236 * 240.00324 * 2 1 3 5 5 O 1.21287 * 119.99966 * 257.78636 * 4 2 1 6 6 N 1.34778 * 120.00342 * 77.78524 * 4 2 1 7 7 C 1.46502 * 119.99761 * 5.00136 * 6 4 2 8 8 C 1.52998 * 109.47436 * 84.50689 * 7 6 4 9 9 O 1.42896 * 109.46854 * 64.99671 * 8 7 6 10 10 C 1.46490 * 120.00387 * 185.00195 * 6 4 2 11 11 C 1.53006 * 109.47171 * 89.99724 * 10 6 4 12 12 N 1.46507 * 109.46949 * 180.02562 * 11 10 6 13 13 C 1.36935 * 119.99706 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00041 * 0.02562 * 13 12 11 15 15 C 1.38806 * 120.00041 * 179.97438 * 13 12 11 16 16 N 1.31624 * 120.00131 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00208 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46874 * 60.00133 * 17 15 13 19 19 H 1.48508 * 109.47155 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47015 * 299.99953 * 17 15 13 21 21 C 1.53002 * 109.47321 * 119.99934 * 2 1 3 22 22 H 1.08994 * 110.21440 * 61.93082 * 21 2 1 23 23 C 1.54483 * 110.24370 * 300.00154 * 21 2 1 24 24 C 1.54626 * 101.79859 * 266.30814 * 23 21 2 25 25 C 1.51347 * 104.16937 * 335.24635 * 24 23 21 26 26 O 1.21273 * 124.93241 * 196.24676 * 25 24 23 27 27 N 1.34421 * 110.12740 * 16.20592 * 25 24 23 28 28 H 1.08997 * 109.46488 * 181.16640 * 1 2 3 29 29 H 1.09001 * 109.46976 * 301.16294 * 1 2 3 30 30 H 1.08998 * 109.47142 * 61.16557 * 1 2 3 31 31 H 1.08996 * 109.47042 * 204.51062 * 7 6 4 32 32 H 1.09005 * 109.47007 * 324.50464 * 7 6 4 33 33 H 1.08998 * 109.47417 * 184.99821 * 8 7 6 34 34 H 1.09009 * 109.46829 * 305.00256 * 8 7 6 35 35 H 0.96704 * 113.99764 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.47769 * 209.99939 * 10 6 4 37 37 H 1.09004 * 109.47055 * 330.00087 * 10 6 4 38 38 H 1.08996 * 109.47044 * 299.99800 * 11 10 6 39 39 H 1.08995 * 109.46783 * 60.00209 * 11 10 6 40 40 H 0.97005 * 119.99965 * 0.02562 * 12 11 10 41 41 H 0.97002 * 120.00389 * 179.97438 * 16 15 13 42 42 H 1.09001 * 110.97062 * 24.45171 * 23 21 2 43 43 H 1.08998 * 110.96444 * 148.17155 * 23 21 2 44 44 H 1.08992 * 110.48971 * 93.90211 * 24 23 21 45 45 H 1.09000 * 110.48786 * 216.54624 * 24 23 21 46 46 H 0.96997 * 124.35326 * 180.45708 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4440 -1.8482 -1.1482 6 7 2.0242 -0.0812 -2.4224 7 6 1.6307 1.3276 -2.5043 8 6 2.8399 2.2136 -2.1981 9 8 3.8289 2.0375 -3.2144 10 6 2.4087 -0.8060 -3.6359 11 6 1.1696 -1.4535 -4.2575 12 7 1.5543 -2.1789 -5.4708 13 6 0.6054 -2.8430 -6.2013 14 1 -0.4267 -2.8317 -5.8833 15 6 0.9697 -3.5299 -7.3512 16 7 2.2274 -3.5433 -7.7392 17 14 -0.3249 -4.4352 -8.3482 18 1 -1.3525 -3.4710 -8.8167 19 1 0.3166 -5.0828 -9.5206 20 1 -0.9678 -5.4709 -7.5002 21 6 2.0401 -0.7212 1.2493 22 1 1.7119 -1.7606 1.2445 23 6 1.5350 -0.0070 2.5225 24 6 2.7112 0.9457 2.8383 25 6 3.9094 0.2806 2.1959 26 8 5.0666 0.5489 2.4404 27 7 3.5046 -0.6513 1.3159 28 1 -0.3632 -1.0275 0.0209 29 1 -0.3633 0.5318 0.8794 30 1 -0.3633 0.4956 -0.9002 31 1 1.2658 1.5451 -3.5081 32 1 0.8413 1.5271 -1.7796 33 1 2.5281 3.2576 -2.1716 34 1 3.2590 1.9348 -1.2312 35 1 4.6257 2.5698 -3.0843 36 1 2.8521 -0.1112 -4.3492 37 1 3.1343 -1.5791 -3.3828 38 1 0.7263 -2.1484 -3.5443 39 1 0.4441 -0.6804 -4.5106 40 1 2.4813 -2.1893 -5.7563 41 1 2.4821 -4.0236 -8.5425 42 1 0.6225 0.5536 2.3194 43 1 1.3808 -0.7185 3.3337 44 1 2.5370 1.9266 2.3961 45 1 2.8539 1.0318 3.9155 46 1 4.1033 -1.2065 0.7923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754891504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:47 Heat of formation + Delta-G solvation = -107.691890 kcal Electronic energy + Delta-G solvation = -27392.769846 eV Core-core repulsion = 23510.787043 eV Total energy + Delta-G solvation = -3881.982802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13891 -39.71193 -37.39168 -36.90023 -35.58929 -34.44232 -33.24327 -31.61429 -31.29191 -29.52687 -27.60609 -27.04741 -25.04243 -23.55807 -23.10400 -21.73659 -20.79167 -20.71028 -19.02417 -18.11979 -17.58205 -17.18654 -16.92690 -16.46447 -16.00401 -15.47857 -15.19764 -14.69848 -14.39207 -14.23361 -14.09599 -13.82043 -13.69258 -13.48855 -13.33391 -13.23051 -13.14380 -12.82783 -12.67944 -12.27901 -12.05408 -11.99215 -11.61112 -11.53429 -11.22726 -11.19017 -10.91405 -10.87565 -10.60715 -10.23158 -10.12636 -10.08724 -9.77023 -9.62313 -9.32862 -8.84064 -8.51944 -6.90024 -5.72789 -3.02177 2.36363 2.63439 2.97329 3.15131 3.46325 3.50179 3.51782 3.93023 4.00722 4.08593 4.21067 4.40257 4.60313 4.63647 4.71840 4.80626 4.86493 4.91091 5.02413 5.06215 5.14483 5.22297 5.25674 5.35338 5.46332 5.51599 5.55218 5.58032 5.63918 5.78124 5.86704 5.93076 6.08604 6.23290 6.55814 6.59527 6.76973 6.86906 6.94022 7.40740 7.53366 7.71557 8.04293 8.22571 8.45584 9.56182 10.13304 10.48299 11.50034 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.003088 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.053412 B = 9064.201688 C = 9488.363748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 H 0.094 0.906 4 C 0.517 3.483 5 O -0.534 6.534 6 N -0.595 5.595 7 C 0.102 3.898 8 C 0.057 3.943 9 O -0.561 6.561 10 C 0.111 3.889 11 C 0.145 3.855 12 N -0.730 5.730 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.147 3.853 22 H 0.102 0.898 23 C -0.132 4.132 24 C -0.157 4.157 25 C 0.515 3.485 26 O -0.540 6.540 27 N -0.719 5.719 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.378 0.622 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.019 0.981 39 H 0.016 0.984 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 15.583 21.853 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 H 0.112 0.888 4 C 0.304 3.696 5 O -0.410 6.410 6 N -0.327 5.327 7 C -0.022 4.022 8 C -0.022 4.022 9 O -0.366 6.366 10 C -0.011 4.011 11 C 0.016 3.984 12 N -0.374 5.374 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.740 3.260 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.213 1.213 21 C 0.041 3.959 22 H 0.120 0.880 23 C -0.169 4.169 24 C -0.198 4.198 25 C 0.301 3.699 26 O -0.417 6.417 27 N -0.373 5.373 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.224 0.776 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.235 14.687 21.780 26.468 hybrid contribution 0.201 -0.246 -0.863 0.919 sum -3.034 14.441 20.918 25.599 Atomic orbital electron populations 1.21871 0.91572 1.03938 1.03101 1.21851 0.98429 1.00990 0.93645 0.88831 1.20404 0.78259 0.86681 0.84249 1.90724 1.46490 1.18265 1.85517 1.47750 1.66671 1.10730 1.07523 1.21802 0.95157 0.80574 1.04621 1.22717 0.90283 0.98328 0.90871 1.86591 1.30426 1.70276 1.49299 1.21714 0.98226 0.96585 0.84600 1.20900 0.94165 0.94012 0.89333 1.42202 1.08841 1.60836 1.25544 1.19151 0.90005 1.24228 1.03634 0.91306 1.24751 0.96306 1.01239 0.98665 1.69658 1.15223 1.47221 1.26045 0.86243 0.80559 0.79615 0.79611 1.21285 1.21644 1.21252 1.21481 0.80022 1.01354 0.93063 0.87973 1.22785 0.98495 0.98780 0.96883 1.22369 0.93904 1.00258 1.03236 1.20973 0.89976 0.79600 0.79372 1.90758 1.20657 1.65595 1.64704 1.46362 1.08201 1.39577 1.43209 0.91084 0.90738 0.91210 0.88705 0.88937 0.92724 0.93920 0.77559 0.89793 0.89980 0.96308 0.96653 0.78211 0.93428 0.88429 0.89382 0.87923 0.87975 0.74422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.65 37.16 0.32 -0.60 16 2 C -0.13 -1.05 1.67 -91.77 -0.15 -1.20 16 3 H 0.09 0.64 5.96 -51.93 -0.31 0.33 16 4 C 0.52 6.96 6.57 -10.99 -0.07 6.89 16 5 O -0.53 -9.36 15.14 5.55 0.08 -9.28 16 6 N -0.59 -8.13 2.43 -173.69 -0.42 -8.55 16 7 C 0.10 1.00 5.40 -4.04 -0.02 0.98 16 8 C 0.06 0.49 7.13 37.16 0.26 0.76 16 9 O -0.56 -6.21 13.12 -35.23 -0.46 -6.67 16 10 C 0.11 2.00 5.47 -4.04 -0.02 1.97 16 11 C 0.14 3.09 6.58 -4.04 -0.03 3.07 16 12 N -0.73 -19.46 5.60 -59.91 -0.34 -19.79 16 13 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -29.00 13.06 55.49 0.72 -28.27 16 17 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 C 0.15 1.19 2.57 -67.01 -0.17 1.02 16 22 H 0.10 0.93 7.87 -51.93 -0.41 0.53 16 23 C -0.13 -0.63 6.52 -25.10 -0.16 -0.79 16 24 C -0.16 -0.97 6.86 -26.71 -0.18 -1.15 16 25 C 0.51 5.65 8.43 -10.83 -0.09 5.56 16 26 O -0.54 -8.36 18.03 5.56 0.10 -8.26 16 27 N -0.72 -7.54 5.49 -52.74 -0.29 -7.83 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.25 6.15 -51.93 -0.32 -0.07 16 30 H 0.07 0.44 6.38 -51.93 -0.33 0.11 16 31 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 32 H 0.09 0.61 4.97 -51.93 -0.26 0.36 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.04 0.37 7.06 -51.92 -0.37 0.00 16 35 H 0.38 2.61 9.12 45.56 0.42 3.03 16 36 H 0.08 1.53 7.65 -51.93 -0.40 1.13 16 37 H 0.08 1.66 7.36 -51.93 -0.38 1.28 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 10.75 7.67 -40.82 -0.31 10.44 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.10 0.25 5.83 -51.93 -0.30 -0.05 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.42 5.07 8.67 -40.82 -0.35 4.72 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -38.40 370.93 -6.85 -45.25 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.25 Total: 11.05 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.57 Total: 8.91 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.32 Total: -64.45 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.28 Total: -24.20 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.40 -6.85 -45.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754891504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.438 kcal (2) G-P(sol) polarization free energy of solvation -38.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds