Wall clock time and date at job start Tue Mar 31 2020 04:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46698 * 2 1 4 4 H 1.09003 * 109.47164 * 304.99765 * 3 2 1 5 5 N 1.46497 * 109.47531 * 65.00195 * 3 2 1 6 6 C 1.34777 * 119.99689 * 275.00566 * 5 3 2 7 7 C 1.50709 * 119.99764 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00146 * 359.97438 * 6 5 3 9 9 C 1.50703 * 109.47240 * 185.00505 * 3 2 1 10 10 O 1.21280 * 119.99896 * 240.00269 * 9 3 2 11 11 N 1.34772 * 120.00061 * 59.99562 * 9 3 2 12 12 C 1.46502 * 120.00045 * 175.03523 * 11 9 3 13 13 C 1.53003 * 112.94332 * 65.44593 * 12 11 9 14 14 C 1.52995 * 109.47047 * 56.10097 * 13 12 11 15 15 O 1.42907 * 109.47125 * 184.89443 * 14 13 12 16 16 C 1.53944 * 113.74248 * 197.04006 * 12 11 9 17 17 N 1.47808 * 86.03688 * 90.87916 * 16 12 11 18 18 C 1.36930 * 134.45736 * 204.64053 * 17 16 12 19 19 H 1.08008 * 120.00342 * 179.87110 * 18 17 16 20 20 C 1.38815 * 120.00403 * 359.86798 * 18 17 16 21 21 N 1.31620 * 119.99446 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00489 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46744 * 90.00340 * 22 20 18 24 24 H 1.48490 * 109.47352 * 210.00192 * 22 20 18 25 25 H 1.48501 * 109.47074 * 330.00555 * 22 20 18 26 26 C 1.47581 * 91.04992 * 24.55269 * 17 16 12 27 27 H 1.09005 * 109.47010 * 299.99469 * 1 2 3 28 28 H 1.08997 * 109.47725 * 60.00490 * 1 2 3 29 29 H 1.09006 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47329 * 240.00098 * 2 1 3 31 31 H 1.08997 * 109.47725 * 119.99510 * 2 1 3 32 32 H 0.96990 * 119.99930 * 94.99681 * 5 3 2 33 33 H 1.09002 * 109.46754 * 89.99715 * 7 6 5 34 34 H 1.08994 * 109.46603 * 209.99625 * 7 6 5 35 35 H 1.08999 * 109.46958 * 329.99796 * 7 6 5 36 36 H 0.97001 * 120.00130 * 355.03487 * 11 9 3 37 37 H 1.08996 * 109.46741 * 176.09669 * 13 12 11 38 38 H 1.08997 * 109.47339 * 296.09490 * 13 12 11 39 39 H 1.09007 * 109.46982 * 304.89009 * 14 13 12 40 40 H 1.08997 * 109.47584 * 64.89331 * 14 13 12 41 41 H 0.96704 * 113.99599 * 179.97438 * 15 14 13 42 42 H 1.09008 * 113.76873 * 205.14690 * 16 12 11 43 43 H 1.09006 * 113.76988 * 336.54265 * 16 12 11 44 44 H 0.97008 * 119.99820 * 179.97438 * 21 20 18 45 45 H 1.09002 * 113.76565 * 221.15414 * 26 17 16 46 46 H 1.08991 * 113.87584 * 89.76645 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 7 1.6524 2.0976 1.2518 6 6 0.4350 2.6643 1.3669 7 6 0.0361 3.3377 2.6549 8 8 -0.3395 2.6325 0.4341 9 6 3.5418 1.4445 -0.1240 10 8 4.2215 1.9438 0.7476 11 7 4.1296 0.8914 -1.2032 12 6 5.5810 0.9888 -1.3774 13 6 6.3629 0.2311 -0.3025 14 6 5.9162 -1.2321 -0.2831 15 8 6.5622 -1.9131 0.7945 16 6 6.0543 0.6933 -2.8122 17 7 5.9077 2.1448 -3.0498 18 6 5.6939 2.9182 -4.1594 19 1 5.6209 3.9915 -4.0637 20 6 5.5710 2.3228 -5.4073 21 7 5.6595 1.0147 -5.5239 22 14 5.2785 3.3777 -6.9209 23 1 6.5838 3.7687 -7.5114 24 1 4.4953 2.6056 -7.9187 25 1 4.5241 4.5975 -6.5359 26 6 6.0821 2.4254 -1.6115 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.2718 2.1233 1.9976 33 1 0.3211 4.3891 2.6185 34 1 -1.0428 3.2580 2.7874 35 1 0.5416 2.8528 3.4900 36 1 3.5917 0.4288 -1.8647 37 1 7.4288 0.2827 -0.5244 38 1 6.1723 0.6822 0.6713 39 1 4.8357 -1.2804 -0.1476 40 1 6.1858 -1.7069 -1.2265 41 1 6.3249 -2.8477 0.8677 42 1 7.0839 0.3401 -2.8712 43 1 5.3594 0.0806 -3.3866 44 1 5.5732 0.5986 -6.3959 45 1 5.4094 3.1931 -1.2290 46 1 7.1191 2.5827 -1.3153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755336072.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:50 Heat of formation + Delta-G solvation = -72.159524 kcal Electronic energy + Delta-G solvation = -27813.835550 eV Core-core repulsion = 23933.393546 eV Total energy + Delta-G solvation = -3880.442003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.58943 -39.52240 -37.84252 -36.55005 -35.28177 -33.69344 -32.69516 -31.81236 -30.64181 -29.81890 -27.35919 -26.66723 -25.12544 -23.54388 -22.27764 -21.40462 -20.73561 -20.24749 -18.84611 -17.70846 -17.31876 -16.74256 -16.61267 -15.90990 -15.75071 -15.23360 -14.95160 -14.66008 -14.46329 -14.15524 -13.94112 -13.74882 -13.66961 -13.36159 -12.90762 -12.68194 -12.59943 -12.50109 -12.16673 -11.95557 -11.71771 -11.54934 -11.44543 -11.29259 -11.05475 -10.94911 -10.89040 -10.69707 -10.07607 -9.94533 -9.90028 -9.84483 -9.64588 -9.37441 -9.09129 -8.91101 -8.59190 -6.95691 -5.84355 -3.15668 2.54366 2.80521 2.93179 3.36105 3.41998 3.43051 3.56392 4.31524 4.43786 4.64834 4.75324 4.86346 4.99823 5.05030 5.09320 5.13430 5.23995 5.32802 5.36242 5.41853 5.50321 5.57455 5.66329 5.73037 5.73864 5.86983 5.89913 6.00896 6.21119 6.22547 6.30225 6.36238 6.45510 6.48949 6.53971 6.79123 7.02254 7.23026 7.41855 7.45368 7.73241 7.80097 7.89661 8.16206 8.44179 8.97820 9.63935 10.50387 11.33058 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.010608 B = 0.004681 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.987965 B = 5980.110640 C = 7533.349245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.125 3.875 4 H 0.115 0.885 5 N -0.710 5.710 6 C 0.511 3.489 7 C -0.171 4.171 8 O -0.543 6.543 9 C 0.514 3.486 10 O -0.540 6.540 11 N -0.683 5.683 12 C 0.124 3.876 13 C -0.115 4.115 14 C 0.081 3.919 15 O -0.577 6.577 16 C 0.167 3.833 17 N -0.608 5.608 18 C -0.219 4.219 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.924 5.924 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.124 3.876 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.409 0.591 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.404 0.596 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.373 0.627 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.254 0.746 45 H 0.049 0.951 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 -5.010 15.230 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.016 3.984 4 H 0.133 0.867 5 N -0.364 5.364 6 C 0.298 3.702 7 C -0.231 4.231 8 O -0.420 6.420 9 C 0.299 3.701 10 O -0.417 6.417 11 N -0.333 5.333 12 C 0.037 3.963 13 C -0.154 4.154 14 C 0.004 3.996 15 O -0.382 6.382 16 C 0.041 3.959 17 N -0.334 5.334 18 C -0.347 4.347 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.002 4.002 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.239 0.761 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.219 0.781 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.398 -3.976 14.895 17.100 hybrid contribution -0.147 -0.146 -1.103 1.123 sum -7.546 -4.122 13.792 16.252 Atomic orbital electron populations 1.21795 0.94124 1.00815 1.03245 1.21906 0.97707 0.94196 1.02916 1.20899 0.92210 0.95474 0.89815 0.86736 1.45814 1.16952 1.57456 1.16143 1.20743 0.81203 0.77917 0.90296 1.21866 1.04049 1.02229 0.94929 1.90742 1.51364 1.58881 1.41054 1.20385 0.89424 0.78104 0.82226 1.90652 1.64949 1.45896 1.40214 1.45480 1.07887 1.56101 1.23803 1.22342 0.79253 0.97934 0.96800 1.21702 1.00168 0.92953 1.00611 1.22145 0.95406 0.93359 0.88732 1.86488 1.71694 1.26699 1.53307 1.22594 0.98477 0.88318 0.86537 1.45958 1.83388 1.02565 1.01483 1.19008 1.41683 0.89808 0.84155 0.90289 1.24729 1.02324 0.95945 0.97244 1.69776 1.56418 1.07846 1.23102 0.86128 0.77722 0.79199 0.82784 1.21614 1.21607 1.20654 1.22806 0.97720 0.93727 0.85976 0.92502 0.91783 0.93246 0.90455 0.91345 0.75397 0.88789 0.88949 0.90197 0.76065 0.90549 0.90064 0.94128 0.93438 0.78129 0.93980 0.90390 0.93614 0.93322 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.51 37.16 0.32 -1.29 16 2 C -0.13 -1.40 5.55 -26.73 -0.15 -1.55 16 3 C 0.12 1.63 2.67 -69.08 -0.18 1.44 16 4 H 0.11 1.69 7.58 -51.93 -0.39 1.30 16 5 N -0.71 -8.28 4.90 -54.93 -0.27 -8.55 16 6 C 0.51 6.03 6.51 -10.98 -0.07 5.96 16 7 C -0.17 -1.29 10.30 36.01 0.37 -0.92 16 8 O -0.54 -8.34 14.24 5.56 0.08 -8.27 16 9 C 0.51 7.86 6.73 -10.99 -0.07 7.78 16 10 O -0.54 -9.39 13.90 5.56 0.08 -9.31 16 11 N -0.68 -10.82 4.38 -49.08 -0.22 -11.03 16 12 C 0.12 2.22 0.61 -134.04 -0.08 2.14 16 13 C -0.11 -1.85 4.86 -26.73 -0.13 -1.98 16 14 C 0.08 1.12 6.86 37.16 0.26 1.37 16 15 O -0.58 -7.68 13.66 -35.23 -0.48 -8.16 16 16 C 0.17 3.58 6.69 -2.84 -0.02 3.56 16 17 N -0.61 -14.93 3.70 -177.51 -0.66 -15.58 16 18 C -0.22 -5.99 10.70 -15.06 -0.16 -6.15 16 19 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -26.01 11.39 55.49 0.63 -25.38 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.12 2.61 7.88 -2.97 -0.02 2.58 16 27 H 0.06 0.68 5.65 -51.93 -0.29 0.39 16 28 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.78 7.33 -51.93 -0.38 0.40 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 4.36 7.79 -40.82 -0.32 4.04 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.40 6.01 7.88 -40.82 -0.32 5.69 16 37 H 0.08 1.25 8.10 -51.93 -0.42 0.82 16 38 H 0.08 1.42 6.80 -51.93 -0.35 1.06 16 39 H 0.04 0.52 7.53 -51.92 -0.39 0.13 16 40 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.37 3.10 9.12 45.56 0.42 3.51 16 42 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 43 H 0.08 1.79 7.11 -51.93 -0.37 1.42 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.05 1.06 7.65 -51.93 -0.40 0.67 16 46 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -33.47 371.93 -6.85 -40.32 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.55 Total: 10.87 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -0.05 Total: 12.69 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.51 Total: -60.55 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.32 Total: -25.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.47 -6.85 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336072.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.842 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds