Wall clock time and date at job start Tue Mar 31 2020 04:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46698 * 2 1 4 4 H 1.09003 * 109.47164 * 304.99765 * 3 2 1 5 5 N 1.46497 * 109.47531 * 65.00195 * 3 2 1 6 6 C 1.34777 * 119.99689 * 275.00566 * 5 3 2 7 7 C 1.50709 * 119.99764 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00146 * 359.97438 * 6 5 3 9 9 C 1.50703 * 109.47240 * 185.00505 * 3 2 1 10 10 O 1.21280 * 119.99896 * 240.00269 * 9 3 2 11 11 N 1.34772 * 120.00061 * 59.99562 * 9 3 2 12 12 C 1.46502 * 120.00045 * 175.03523 * 11 9 3 13 13 C 1.53003 * 112.94332 * 65.44593 * 12 11 9 14 14 C 1.52995 * 109.47047 * 56.10097 * 13 12 11 15 15 O 1.42907 * 109.47125 * 184.89443 * 14 13 12 16 16 C 1.53944 * 113.74248 * 197.04006 * 12 11 9 17 17 N 1.47808 * 86.03688 * 90.87916 * 16 12 11 18 18 C 1.36930 * 134.45736 * 204.64053 * 17 16 12 19 19 H 1.08008 * 120.00342 * 179.87110 * 18 17 16 20 20 C 1.38815 * 120.00403 * 359.86798 * 18 17 16 21 21 N 1.31620 * 119.99446 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00489 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46744 * 90.00340 * 22 20 18 24 24 H 1.48490 * 109.47352 * 210.00192 * 22 20 18 25 25 H 1.48501 * 109.47074 * 330.00555 * 22 20 18 26 26 C 1.47581 * 91.04992 * 24.55269 * 17 16 12 27 27 H 1.09005 * 109.47010 * 299.99469 * 1 2 3 28 28 H 1.08997 * 109.47725 * 60.00490 * 1 2 3 29 29 H 1.09006 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47329 * 240.00098 * 2 1 3 31 31 H 1.08997 * 109.47725 * 119.99510 * 2 1 3 32 32 H 0.96990 * 119.99930 * 94.99681 * 5 3 2 33 33 H 1.09002 * 109.46754 * 89.99715 * 7 6 5 34 34 H 1.08994 * 109.46603 * 209.99625 * 7 6 5 35 35 H 1.08999 * 109.46958 * 329.99796 * 7 6 5 36 36 H 0.97001 * 120.00130 * 355.03487 * 11 9 3 37 37 H 1.08996 * 109.46741 * 176.09669 * 13 12 11 38 38 H 1.08997 * 109.47339 * 296.09490 * 13 12 11 39 39 H 1.09007 * 109.46982 * 304.89009 * 14 13 12 40 40 H 1.08997 * 109.47584 * 64.89331 * 14 13 12 41 41 H 0.96704 * 113.99599 * 179.97438 * 15 14 13 42 42 H 1.09008 * 113.76873 * 205.14690 * 16 12 11 43 43 H 1.09006 * 113.76988 * 336.54265 * 16 12 11 44 44 H 0.97008 * 119.99820 * 179.97438 * 21 20 18 45 45 H 1.09002 * 113.76565 * 221.15414 * 26 17 16 46 46 H 1.08991 * 113.87584 * 89.76645 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 7 1.6524 2.0976 1.2518 6 6 0.4350 2.6643 1.3669 7 6 0.0361 3.3377 2.6549 8 8 -0.3395 2.6325 0.4341 9 6 3.5418 1.4445 -0.1240 10 8 4.2215 1.9438 0.7476 11 7 4.1296 0.8914 -1.2032 12 6 5.5810 0.9888 -1.3774 13 6 6.3629 0.2311 -0.3025 14 6 5.9162 -1.2321 -0.2831 15 8 6.5622 -1.9131 0.7945 16 6 6.0543 0.6933 -2.8122 17 7 5.9077 2.1448 -3.0498 18 6 5.6939 2.9182 -4.1594 19 1 5.6209 3.9915 -4.0637 20 6 5.5710 2.3228 -5.4073 21 7 5.6595 1.0147 -5.5239 22 14 5.2785 3.3777 -6.9209 23 1 6.5838 3.7687 -7.5114 24 1 4.4953 2.6056 -7.9187 25 1 4.5241 4.5975 -6.5359 26 6 6.0821 2.4254 -1.6115 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.2718 2.1233 1.9976 33 1 0.3211 4.3891 2.6185 34 1 -1.0428 3.2580 2.7874 35 1 0.5416 2.8528 3.4900 36 1 3.5917 0.4288 -1.8647 37 1 7.4288 0.2827 -0.5244 38 1 6.1723 0.6822 0.6713 39 1 4.8357 -1.2804 -0.1476 40 1 6.1858 -1.7069 -1.2265 41 1 6.3249 -2.8477 0.8677 42 1 7.0839 0.3401 -2.8712 43 1 5.3594 0.0806 -3.3866 44 1 5.5732 0.5986 -6.3959 45 1 5.4094 3.1931 -1.2290 46 1 7.1191 2.5827 -1.3153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755336072.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:49 Heat of formation + Delta-G solvation = -99.371807 kcal Electronic energy + Delta-G solvation = -27815.015563 eV Core-core repulsion = 23933.393546 eV Total energy + Delta-G solvation = -3881.622017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84188 -40.72869 -39.23998 -37.66330 -36.35715 -35.24585 -34.01882 -33.27452 -32.04934 -30.57768 -28.98197 -27.90549 -26.84943 -25.09623 -23.30619 -22.83316 -22.00281 -21.34797 -20.24712 -18.92694 -18.73167 -18.23708 -17.68880 -17.04925 -16.95278 -16.67113 -16.34323 -16.16963 -15.76899 -15.36966 -15.23362 -15.04790 -14.95755 -14.38261 -14.31827 -14.27024 -13.58942 -13.31786 -13.27424 -13.09784 -13.06674 -12.93448 -12.84939 -12.80969 -12.59235 -12.47442 -12.23122 -11.87935 -11.84003 -11.67635 -11.34290 -11.04306 -10.92629 -10.86845 -10.67393 -10.13762 -9.99837 -8.93624 -7.92952 -5.24773 1.45551 1.45915 1.49213 1.54246 1.66230 1.85709 2.44282 2.46747 3.17337 3.26294 3.36886 3.52846 3.65345 3.85466 3.98131 4.04248 4.18493 4.32745 4.37858 4.42798 4.49965 4.53761 4.58964 4.67703 4.70801 4.73592 4.83852 4.85466 4.94950 5.00028 5.05337 5.12750 5.15031 5.17194 5.26620 5.36346 5.42892 5.44947 5.70029 5.89290 6.51087 6.55586 6.91044 6.95257 7.15083 7.25545 7.57327 8.51075 9.23306 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.010608 B = 0.004681 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.987965 B = 5980.110640 C = 7533.349245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.131 3.869 4 H 0.095 0.905 5 N -0.706 5.706 6 C 0.506 3.494 7 C -0.164 4.164 8 O -0.584 6.584 9 C 0.518 3.482 10 O -0.558 6.558 11 N -0.683 5.683 12 C 0.155 3.845 13 C -0.108 4.108 14 C 0.089 3.911 15 O -0.590 6.590 16 C 0.170 3.830 17 N -0.632 5.632 18 C -0.235 4.235 19 H 0.073 0.927 20 C -0.052 4.052 21 N -0.944 5.944 22 Si 0.971 3.029 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.120 3.880 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.416 0.584 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.396 0.604 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.251 0.749 45 H 0.036 0.964 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -5.705 16.592 19.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.113 0.887 5 N -0.360 5.360 6 C 0.295 3.705 7 C -0.223 4.223 8 O -0.464 6.464 9 C 0.304 3.696 10 O -0.437 6.437 11 N -0.333 5.333 12 C 0.066 3.934 13 C -0.147 4.147 14 C 0.011 3.989 15 O -0.399 6.399 16 C 0.045 3.955 17 N -0.358 5.358 18 C -0.364 4.364 19 H 0.091 0.909 20 C -0.246 4.246 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.201 1.201 26 C -0.007 4.007 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.254 0.746 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.246 0.754 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.246 0.754 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.911 -4.689 16.303 18.719 hybrid contribution 0.047 0.100 -1.473 1.477 sum -7.864 -4.589 14.830 17.403 Atomic orbital electron populations 1.21713 0.94237 1.01507 1.01886 1.21886 0.97397 0.92668 1.04068 1.20779 0.90115 0.96899 0.90023 0.88733 1.45856 1.17222 1.57269 1.15677 1.21548 0.80514 0.77206 0.91235 1.21895 1.04770 1.02433 0.93168 1.90728 1.52415 1.60418 1.42830 1.20713 0.90273 0.77175 0.81474 1.90644 1.65657 1.46513 1.40859 1.45440 1.07080 1.56482 1.24298 1.21828 0.80565 0.95619 0.95342 1.21574 0.99623 0.94593 0.98942 1.21971 0.95964 0.91727 0.89249 1.86422 1.71879 1.28724 1.52845 1.22501 0.97862 0.86590 0.88547 1.46235 1.83551 1.03902 1.02141 1.19252 1.41539 0.90072 0.85494 0.90948 1.25407 1.02637 0.97088 0.99500 1.69912 1.57211 1.08884 1.23280 0.85197 0.77393 0.77872 0.79546 1.21516 1.21617 1.20143 1.22934 0.97968 0.95500 0.84254 0.93239 0.93793 0.91424 0.89483 0.89942 0.74589 0.87765 0.88254 0.87603 0.75405 0.90859 0.90928 0.92947 0.93025 0.75433 0.94605 0.91939 0.93992 0.94523 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 71.98 0.61 -2.31 16 2 C -0.12 -2.45 5.55 30.60 0.17 -2.28 16 3 C 0.13 3.32 2.67 44.25 0.12 3.44 16 4 H 0.09 2.84 7.58 -2.39 -0.02 2.82 16 5 N -0.71 -15.67 4.90 -446.08 -2.19 -17.86 16 6 C 0.51 11.43 6.51 87.66 0.57 12.00 16 7 C -0.16 -2.10 10.30 71.24 0.73 -1.37 16 8 O -0.58 -17.92 14.24 -3.03 -0.04 -17.96 16 9 C 0.52 15.41 6.73 87.66 0.59 16.00 16 10 O -0.56 -18.87 13.90 -3.03 -0.04 -18.92 16 11 N -0.68 -21.21 4.38 -427.57 -1.87 -23.09 16 12 C 0.15 5.47 0.61 5.36 0.00 5.48 16 13 C -0.11 -3.35 4.86 30.59 0.15 -3.20 16 14 C 0.09 2.25 6.86 71.98 0.49 2.75 16 15 O -0.59 -14.17 13.66 -148.98 -2.04 -16.21 16 16 C 0.17 7.38 6.69 86.44 0.58 7.96 16 17 N -0.63 -31.44 3.70 -715.53 -2.65 -34.09 16 18 C -0.24 -13.04 10.70 84.04 0.90 -12.14 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 20 C -0.05 -2.89 5.50 84.86 0.47 -2.42 16 21 N -0.94 -53.58 11.39 21.65 0.25 -53.33 16 22 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.12 5.05 7.88 86.48 0.68 5.73 16 27 H 0.05 1.13 5.65 -2.38 -0.01 1.12 16 28 H 0.04 1.11 7.85 -2.39 -0.02 1.09 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.09 1.60 7.33 -2.39 -0.02 1.58 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.42 8.16 7.79 -92.72 -0.72 7.44 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.41 11.95 7.88 -92.71 -0.73 11.22 16 37 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 38 H 0.07 2.43 6.80 -2.39 -0.02 2.41 16 39 H 0.05 1.21 7.53 -2.38 -0.02 1.20 16 40 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 41 H 0.40 5.39 9.12 -74.05 -0.68 4.71 16 42 H 0.04 1.60 8.07 -2.38 -0.02 1.58 16 43 H 0.06 2.90 7.11 -2.38 -0.02 2.89 16 44 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 45 H 0.04 1.62 7.65 -2.39 -0.02 1.60 16 46 H 0.05 2.05 8.10 -2.39 -0.02 2.03 16 Total: -1.00 -72.04 371.93 -1.60 -73.64 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -1.11 Total: 31.08 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: 6.07 Total: 29.62 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -6.46 Total: -128.37 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -2.12 Total: -53.09 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.04 -1.60 -73.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336072.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.730 kcal (2) G-P(sol) polarization free energy of solvation -72.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds