Wall clock time and date at job start Tue Mar 31 2020 04:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30834 * 125.90105 * 2 1 4 4 N 1.40084 * 108.20607 * 180.25985 * 3 2 1 5 5 H 0.96998 * 126.03409 * 179.73812 * 4 3 2 6 6 C 1.34952 * 107.92454 * 359.71707 * 4 3 2 7 7 C 1.50695 * 126.12555 * 180.02562 * 6 4 3 8 8 C 1.35312 * 107.74277 * 0.02562 * 6 4 3 9 9 S 1.76207 * 126.03834 * 179.97438 * 8 6 4 10 10 O 1.42105 * 106.40092 * 336.46782 * 9 8 6 11 11 O 1.42093 * 106.40562 * 203.54141 * 9 8 6 12 12 N 1.65605 * 107.21495 * 89.99961 * 9 8 6 13 13 C 1.46967 * 120.59208 * 90.00572 * 12 9 8 14 14 C 1.53374 * 108.63231 * 235.25072 * 13 12 9 15 15 N 1.46972 * 108.63217 * 310.57203 * 14 13 12 16 16 C 1.36935 * 120.59045 * 235.20705 * 15 14 13 17 17 H 1.08002 * 119.99725 * 151.84492 * 16 15 14 18 18 C 1.38804 * 120.00405 * 331.57419 * 16 15 14 19 19 N 1.31622 * 119.99787 * 342.82520 * 18 16 15 20 20 Si 1.86800 * 120.00346 * 162.82771 * 18 16 15 21 21 H 1.48493 * 109.47374 * 89.99790 * 20 18 16 22 22 H 1.48496 * 109.47349 * 210.00137 * 20 18 16 23 23 H 1.48504 * 109.47003 * 329.99893 * 20 18 16 24 24 C 1.46962 * 118.81330 * 55.48066 * 15 14 13 25 25 C 1.46958 * 120.59680 * 270.02484 * 12 9 8 26 26 H 1.09001 * 109.47136 * 270.21473 * 1 2 3 27 27 H 1.09001 * 109.47143 * 30.21470 * 1 2 3 28 28 H 1.09006 * 109.47170 * 150.20879 * 1 2 3 29 29 H 1.09002 * 109.46660 * 269.97414 * 7 6 4 30 30 H 1.08999 * 109.47284 * 29.97413 * 7 6 4 31 31 H 1.08994 * 109.47260 * 149.97902 * 7 6 4 32 32 H 1.08996 * 109.60899 * 115.49967 * 13 12 9 33 33 H 1.09001 * 109.60456 * 354.98946 * 13 12 9 34 34 H 1.09002 * 109.60640 * 190.83592 * 14 13 12 35 35 H 1.08999 * 109.75615 * 70.39807 * 14 13 12 36 36 H 0.96999 * 119.99847 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.60973 * 64.26416 * 24 15 14 38 38 H 1.08995 * 109.61395 * 184.77560 * 24 15 14 39 39 H 1.09002 * 109.60988 * 244.49863 * 25 12 9 40 40 H 1.09009 * 109.61106 * 5.00636 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 1 4.3908 1.2079 -0.0110 6 6 3.6142 -0.7155 -0.0033 7 6 4.8350 -1.5990 -0.0073 8 6 2.3271 -1.1330 0.0036 9 16 1.7807 -2.8082 0.0090 10 8 2.8419 -3.5781 -0.5392 11 8 0.4656 -2.8031 -0.5290 12 7 1.6365 -3.2716 1.5923 13 6 0.3685 -3.0887 2.3126 14 6 0.6398 -2.2729 3.5828 15 7 1.7775 -2.8741 4.2929 16 6 1.6583 -3.2564 5.6024 17 1 2.2640 -4.0640 5.9864 18 6 0.7633 -2.6024 6.4378 19 7 0.2833 -1.4255 6.0955 20 14 0.2400 -3.3923 8.0476 21 1 1.1691 -2.9758 9.1284 22 1 -1.1394 -2.9588 8.3863 23 1 0.2740 -4.8703 7.9078 24 6 3.0470 -3.0519 3.5743 25 6 2.7741 -3.8727 2.3024 26 1 -0.3633 0.0039 1.0277 27 1 -0.3633 0.8881 -0.5172 28 1 -0.3634 -0.8919 -0.5106 29 1 5.1241 -1.8145 -1.0359 30 1 5.6537 -1.0899 0.5012 31 1 4.6101 -2.5318 0.5098 32 1 -0.0421 -4.0614 2.5832 33 1 -0.3385 -2.5539 1.6784 34 1 -0.2418 -2.2900 4.2237 35 1 0.8780 -1.2434 3.3156 36 1 -0.3425 -0.9687 6.6791 37 1 3.4539 -2.0776 3.3038 38 1 3.7557 -3.5834 4.2095 39 1 2.5347 -4.9013 2.5723 40 1 3.6557 -3.8558 1.6615 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:08 Heat of formation + Delta-G solvation = 26.464604 kcal Electronic energy + Delta-G solvation = -25968.273905 eV Core-core repulsion = 22333.602430 eV Total energy + Delta-G solvation = -3634.671475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36588 -37.56805 -37.04817 -35.53865 -33.79740 -33.47229 -31.85130 -31.08845 -30.15941 -28.05205 -27.20662 -26.38150 -23.24287 -22.86330 -21.70520 -20.22376 -19.88827 -18.46961 -17.91473 -17.35849 -16.19359 -15.91759 -15.44205 -15.26706 -14.78944 -14.14683 -13.91784 -13.73878 -13.69132 -13.45561 -13.36840 -13.27793 -12.93900 -12.66165 -12.42014 -12.17177 -12.04506 -11.96133 -11.50242 -11.37684 -11.35531 -11.12502 -10.81753 -10.72806 -10.49181 -10.38465 -10.24411 -9.95599 -9.76794 -9.40930 -9.16151 -8.71906 -8.46338 -6.69452 -5.84233 -3.28473 0.79706 1.55233 2.32047 2.67947 3.34190 3.41721 3.42349 3.44885 4.11522 4.33843 4.38891 4.44968 4.76596 4.90609 5.14179 5.26085 5.30460 5.32311 5.53658 5.59878 5.65699 5.78750 5.81887 5.89333 5.99585 6.04970 6.12270 6.29499 6.38948 6.43862 6.52954 6.66057 6.81433 6.93657 7.07359 7.29964 7.47121 7.56840 7.73842 8.37781 9.13966 9.76951 10.34254 11.23160 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.005020 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.324056 B = 5576.419038 C = 5782.807865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.173 3.827 3 N -0.297 5.297 4 N -0.466 5.466 5 H 0.439 0.561 6 C 0.215 3.785 7 C -0.117 4.117 8 C -0.814 4.814 9 S 2.720 3.280 10 O -0.972 6.972 11 O -0.964 6.964 12 N -0.986 5.986 13 C 0.096 3.904 14 C 0.158 3.842 15 N -0.587 5.587 16 C -0.255 4.255 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.132 3.868 25 C 0.105 3.895 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.021 0.979 36 H 0.255 0.745 37 H 0.019 0.981 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 0.595 -12.505 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.003 3.997 3 N -0.118 5.118 4 N -0.170 5.170 5 H 0.283 0.717 6 C 0.079 3.921 7 C -0.175 4.175 8 C -0.911 4.911 9 S 2.809 3.191 10 O -0.962 6.962 11 O -0.954 6.954 12 N -0.826 5.826 13 C -0.030 4.030 14 C 0.031 3.969 15 N -0.310 5.310 16 C -0.384 4.384 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.004 3.996 25 C -0.023 4.023 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.884 1.521 -13.119 14.458 hybrid contribution 0.465 0.087 1.317 1.399 sum 6.349 1.608 -11.802 13.498 Atomic orbital electron populations 1.20812 0.85604 1.05626 1.04855 1.21879 0.96915 0.88228 0.92692 1.77334 0.85921 1.22003 1.26556 1.46645 1.08025 1.04850 1.57462 0.71666 1.20938 0.95727 0.85152 0.90263 1.20948 0.92410 0.98935 1.05224 1.31395 0.99785 1.25223 1.34730 1.00936 0.73106 0.72585 0.72464 1.93507 1.57412 1.68391 1.76865 1.93470 1.37864 1.87027 1.77063 1.57423 1.19889 1.75084 1.30154 1.22326 0.82791 1.01902 0.95960 1.21172 0.93397 0.92509 0.89862 1.43895 1.05682 1.72513 1.08924 1.19178 1.22195 1.11449 0.85582 0.91573 1.25060 1.01715 0.95056 0.97718 1.70020 1.34041 1.12394 1.38100 0.86301 0.77860 0.79077 0.83532 1.21486 1.21526 1.20411 1.21359 0.90027 0.96345 0.91898 1.22129 0.86807 0.98005 0.95313 0.89020 0.90282 0.87064 0.88264 0.89942 0.87841 0.91401 0.90394 0.88353 0.96039 0.93536 0.96309 0.91691 0.91060 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.14 36.01 0.37 -1.20 16 2 C 0.17 2.79 7.21 -82.41 -0.59 2.19 16 3 N -0.30 -4.73 12.70 33.67 0.43 -4.30 16 4 N -0.47 -5.97 7.36 33.47 0.25 -5.73 16 5 H 0.44 3.86 8.96 -182.61 -1.64 2.23 16 6 C 0.21 2.87 7.20 -82.27 -0.59 2.28 16 7 C -0.12 -1.16 9.47 36.00 0.34 -0.82 16 8 C -0.81 -12.76 6.17 -40.01 -0.25 -13.01 16 9 S 2.72 44.17 5.65 -107.50 -0.61 43.56 16 10 O -0.97 -16.09 14.51 -57.17 -0.83 -16.92 16 11 O -0.96 -16.96 14.05 -57.17 -0.80 -17.77 16 12 N -0.99 -16.83 3.26 -113.00 -0.37 -17.20 16 13 C 0.10 1.78 6.55 -3.59 -0.02 1.75 16 14 C 0.16 3.55 5.51 -3.59 -0.02 3.53 16 15 N -0.59 -13.90 2.96 -171.76 -0.51 -14.41 16 16 C -0.25 -6.64 9.57 -15.06 -0.14 -6.78 16 17 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 19 N -0.90 -25.20 11.20 55.49 0.62 -24.58 16 20 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.13 2.55 6.70 -3.37 -0.02 2.52 16 25 C 0.10 1.71 6.56 -3.37 -0.02 1.69 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.11 1.58 5.66 -51.93 -0.29 1.29 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.13 5.29 -51.93 -0.27 0.85 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.30 7.09 -51.93 -0.37 0.93 16 34 H 0.10 2.46 6.00 -51.93 -0.31 2.15 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.03 5.60 -51.92 -0.29 0.74 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -33.13 330.45 -9.44 -42.57 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.52 Total: 1.68 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.04 Total: -7.84 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: 0.42 Total: -66.21 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.63 Total: -34.68 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 16 Polarization: 44.17 SS G_CDS: -0.61 Total: 43.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.13 -9.44 -42.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.035 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds