Wall clock time and date at job start Tue Mar 31 2020 04:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.47024 * 2 1 4 4 C 1.46501 * 119.99466 * 275.00038 * 3 2 1 5 5 C 1.52997 * 109.47069 * 274.99467 * 4 3 2 6 6 S 1.65592 * 120.00310 * 94.99852 * 3 2 1 7 7 O 1.42101 * 106.40286 * 336.46168 * 6 3 2 8 8 O 1.42099 * 106.40610 * 203.54225 * 6 3 2 9 9 C 1.76199 * 107.21821 * 89.99739 * 6 3 2 10 10 C 1.40194 * 120.02978 * 289.98101 * 9 6 3 11 11 C 1.36397 * 119.26855 * 180.02562 * 10 9 6 12 12 C 1.40540 * 119.30060 * 359.76647 * 11 10 9 13 13 O 1.22066 * 119.98566 * 180.26781 * 12 11 10 14 14 N 1.34656 * 120.03279 * 0.50473 * 12 11 10 15 15 C 1.46499 * 119.62971 * 179.73891 * 14 12 11 16 16 C 1.50701 * 109.46992 * 269.72757 * 15 14 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.35358 * 120.02307 * 109.99879 * 9 6 3 25 25 H 1.09000 * 109.47662 * 60.00065 * 1 2 3 26 26 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47426 * 300.00233 * 1 2 3 28 28 H 1.08997 * 109.46907 * 240.00188 * 2 1 3 29 29 H 1.09001 * 109.47185 * 119.99710 * 2 1 3 30 30 H 1.08999 * 109.47710 * 35.00468 * 4 3 2 31 31 H 1.09006 * 109.47008 * 155.00017 * 4 3 2 32 32 H 1.08994 * 109.47669 * 300.00537 * 5 4 3 33 33 H 1.09000 * 109.46767 * 60.00859 * 5 4 3 34 34 H 1.09002 * 109.46954 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.36434 * 0.04275 * 10 9 6 36 36 H 1.07994 * 120.34991 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.47391 * 149.72747 * 15 14 12 38 38 H 1.09001 * 109.46813 * 29.72804 * 15 14 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 40 40 H 1.08001 * 119.64795 * 359.97438 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.5151 1.7840 -1.8918 6 16 2.4121 2.1203 1.4286 7 8 1.6868 1.4417 2.4447 8 8 2.3056 3.5187 1.1997 9 6 4.1169 1.7942 1.7319 10 6 4.5343 0.4989 2.0685 11 6 5.8577 0.2639 2.3006 12 6 6.7738 1.3242 2.1924 13 8 7.9617 1.1270 2.3926 14 7 6.3412 2.5587 1.8726 15 6 7.3031 3.6587 1.7678 16 6 7.4436 4.3325 3.1085 17 1 6.8737 3.9767 3.9541 18 6 8.3004 5.4026 3.2557 19 7 8.9947 5.8356 2.2262 20 14 8.4751 6.2374 4.9177 21 1 7.5928 5.5647 5.9047 22 1 9.8859 6.1452 5.3720 23 1 8.0859 7.6654 4.7976 24 6 5.0245 2.7943 1.6405 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3616 1.8098 -1.9454 31 1 2.0921 3.1803 -1.0757 32 1 4.3116 2.0830 -1.2105 33 1 3.5812 0.7124 -2.0801 34 1 3.6193 2.3255 -2.8320 35 1 3.8160 -0.3042 2.1429 36 1 6.1986 -0.7273 2.5606 37 1 6.9494 4.3819 1.0330 38 1 8.2708 3.2665 1.4551 39 1 9.5973 6.5887 2.3297 40 1 4.6976 3.7903 1.3808 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045101921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:22 Heat of formation + Delta-G solvation = -81.946345 kcal Electronic energy + Delta-G solvation = -24991.549864 eV Core-core repulsion = 21319.884586 eV Total energy + Delta-G solvation = -3671.665277 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80545 -37.31561 -37.22937 -36.50729 -35.74768 -34.59347 -32.62241 -32.12800 -29.86545 -28.95469 -27.92024 -24.41579 -23.87149 -23.42912 -22.31579 -21.98639 -18.97766 -17.95789 -17.47716 -17.24589 -16.88250 -16.48018 -16.09430 -15.29939 -14.91630 -14.74878 -14.33358 -14.25877 -14.03014 -13.79370 -13.63134 -13.14262 -13.02483 -12.56694 -12.28745 -12.13648 -12.05737 -11.98917 -11.94651 -11.85763 -11.81876 -11.73941 -11.23807 -11.17013 -11.03625 -10.90237 -10.76814 -10.42243 -10.31481 -9.43143 -9.30813 -9.27555 -8.71003 -7.86030 -6.34059 -4.42136 0.46935 1.17489 1.72306 2.94995 3.18501 3.24936 3.27149 3.35844 3.80147 4.02137 4.25323 4.35545 4.52575 4.84420 4.89968 4.95059 4.96011 5.01912 5.15828 5.18165 5.19396 5.25753 5.36991 5.52105 5.57117 5.68746 5.73367 5.94009 6.00438 6.03604 6.10182 6.17052 6.35174 6.48402 6.58127 6.87357 6.98356 7.59146 7.61521 7.75887 8.47370 8.61522 9.25214 10.74921 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.004179 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.838288 B = 6698.639303 C = 6960.976261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 N -0.999 5.999 4 C 0.112 3.888 5 C -0.177 4.177 6 S 2.710 3.290 7 O -0.957 6.957 8 O -0.962 6.962 9 C -0.817 4.817 10 C 0.037 3.963 11 C -0.257 4.257 12 C 0.518 3.482 13 O -0.526 6.526 14 N -0.465 5.465 15 C 0.210 3.790 16 C -0.545 4.545 17 H 0.065 0.935 18 C 0.069 3.931 19 N -0.886 5.886 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.287 3.713 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.269 0.731 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.268 -9.968 -9.136 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.005 4.005 3 N -0.836 5.836 4 C -0.013 4.013 5 C -0.236 4.236 6 S 2.801 3.199 7 O -0.947 6.947 8 O -0.952 6.952 9 C -0.910 4.910 10 C 0.015 3.985 11 C -0.280 4.280 12 C 0.319 3.681 13 O -0.406 6.406 14 N -0.166 5.166 15 C 0.093 3.907 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C 0.145 3.855 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.754 -9.473 -8.541 20.270 hybrid contribution 0.932 0.125 0.712 1.179 sum -14.823 -9.348 -7.830 19.193 Atomic orbital electron populations 1.22224 0.95870 1.02415 1.02766 1.21232 0.94593 0.81413 1.03262 1.57672 1.79712 1.23834 1.22402 1.21368 0.97926 0.97318 0.84726 1.22252 0.97550 1.02332 1.01436 1.01379 0.73267 0.73002 0.72261 1.93561 1.70134 1.75617 1.55423 1.93549 1.86604 1.29834 1.85227 1.30129 1.25125 1.01896 1.33896 1.20526 0.96021 0.93380 0.88580 1.22054 0.93408 1.00044 1.12466 1.17225 0.89761 0.82378 0.78775 1.90951 1.17205 1.82888 1.49554 1.46515 1.07967 1.13135 1.49006 1.20189 0.88605 0.82181 0.99747 1.21227 1.27008 1.15272 0.94755 0.91689 1.24913 0.94457 0.96379 0.97751 1.69918 1.26145 1.26114 1.30159 0.86269 0.78331 0.79070 0.82857 1.19476 1.20505 1.20445 1.21951 0.83176 0.98943 0.81472 0.92306 0.91494 0.91743 0.90312 0.90065 0.90074 0.88725 0.92235 0.92168 0.91317 0.85017 0.83641 0.92773 0.91493 0.92143 0.80443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.24 37.16 0.38 -0.89 16 2 C 0.12 0.93 6.07 -4.04 -0.02 0.90 16 3 N -1.00 -9.75 2.78 -114.38 -0.32 -10.06 16 4 C 0.11 0.93 6.40 -4.04 -0.03 0.90 16 5 C -0.18 -1.47 10.24 37.16 0.38 -1.09 16 6 S 2.71 36.54 5.62 -107.50 -0.60 35.94 16 7 O -0.96 -14.72 16.84 -57.17 -0.96 -15.68 16 8 O -0.96 -15.01 15.48 -57.17 -0.88 -15.89 16 9 C -0.82 -12.28 5.89 -39.87 -0.24 -12.51 16 10 C 0.04 0.53 9.68 -39.51 -0.38 0.15 16 11 C -0.26 -4.37 9.99 -39.38 -0.39 -4.76 16 12 C 0.52 11.27 7.40 -15.45 -0.11 11.16 16 13 O -0.53 -13.53 16.64 4.86 0.08 -13.45 16 14 N -0.47 -9.86 2.57 -121.06 -0.31 -10.17 16 15 C 0.21 5.19 5.09 -5.19 -0.03 5.16 16 16 C -0.54 -14.89 9.38 -34.44 -0.32 -15.21 16 17 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 18 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 19 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 20 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 C 0.29 5.01 9.80 -16.84 -0.17 4.84 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 29 H 0.08 0.61 7.25 -51.93 -0.38 0.23 16 30 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 31 H 0.09 0.85 6.92 -51.93 -0.36 0.49 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.13 1.41 7.70 -52.49 -0.40 1.01 16 36 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.05 1.28 8.01 -51.93 -0.42 0.86 16 38 H 0.07 1.83 7.38 -51.93 -0.38 1.45 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.18 2.81 7.23 -52.49 -0.38 2.43 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -34.01 353.45 -8.65 -42.66 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.66 Total: -1.14 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.03 Total: -9.55 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.11 Total: -44.43 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.77 Total: -45.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 36.54 SS G_CDS: -0.60 Total: 35.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.01 -8.65 -42.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045101921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.290 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds