Wall clock time and date at job start Tue Mar 31 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38754 * 120.05516 * 359.72833 * 3 2 1 5 5 C 1.38132 * 119.94111 * 179.74499 * 4 3 2 6 6 C 1.38289 * 120.05426 * 0.50680 * 5 4 3 7 7 C 1.50701 * 119.94211 * 179.74593 * 6 5 4 8 8 C 1.52992 * 109.47152 * 270.02113 * 7 6 5 9 9 N 1.46897 * 109.47165 * 179.97438 * 8 7 6 10 10 C 1.46903 * 111.00019 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47002 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00051 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99556 * 180.02562 * 11 10 9 14 14 N 1.31504 * 120.00429 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99554 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47321 * 59.99867 * 15 13 11 17 17 H 1.48497 * 109.47017 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46938 * 299.99635 * 15 13 11 19 19 C 1.38241 * 120.11132 * 359.76692 * 6 5 4 20 20 C 1.38169 * 120.05726 * 359.97438 * 19 6 5 21 21 S 1.76208 * 120.02650 * 179.97438 * 20 19 6 22 22 N 1.65606 * 107.21401 * 115.02190 * 21 20 19 23 23 O 1.42095 * 106.39880 * 228.56078 * 21 20 19 24 24 O 1.42102 * 106.40123 * 1.48336 * 21 20 19 25 25 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.03298 * 359.97012 * 4 3 2 29 29 H 1.07996 * 119.97076 * 180.25178 * 5 4 3 30 30 H 1.09001 * 109.47018 * 30.02039 * 7 6 5 31 31 H 1.08996 * 109.46847 * 150.01677 * 7 6 5 32 32 H 1.09008 * 109.47337 * 300.00160 * 8 7 6 33 33 H 1.09005 * 109.47351 * 60.00074 * 8 7 6 34 34 H 1.00901 * 111.00135 * 56.04970 * 9 8 7 35 35 H 1.08998 * 109.46956 * 300.00143 * 10 9 8 36 36 H 1.08996 * 109.47148 * 60.00170 * 10 9 8 37 37 H 0.97004 * 120.00469 * 180.02562 * 14 13 11 38 38 H 1.08005 * 119.97232 * 180.02562 * 19 6 5 39 39 H 0.96991 * 120.00140 * 359.97438 * 22 21 20 40 40 H 0.96996 * 119.99422 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9210 3.6048 -0.0004 6 6 3.3021 3.6757 0.0001 7 6 3.9863 5.0185 0.0001 8 6 4.2178 5.4729 -1.4423 9 7 4.8842 6.7820 -1.4423 10 6 5.1237 7.2509 -2.8137 11 6 5.8076 8.5932 -2.7734 12 1 6.0414 9.0518 -1.8240 13 6 6.1349 9.2356 -3.9487 14 7 5.8507 8.6768 -5.1047 15 14 6.9833 10.8991 -3.8988 16 1 8.2799 10.7723 -3.1861 17 1 7.2243 11.3736 -5.2851 18 1 6.1196 11.8740 -3.1855 19 6 4.0561 2.5170 0.0000 20 6 3.4311 1.2847 0.0001 21 16 4.3930 -0.1917 -0.0007 22 7 4.1006 -0.9678 1.4327 23 8 3.8555 -1.0201 -1.0225 24 8 5.7538 0.2160 0.0340 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2129 2.3204 -0.0106 29 1 1.3342 4.5114 -0.0007 30 1 3.3583 5.7462 0.5140 31 1 4.9441 4.9381 0.5140 32 1 4.8458 4.7451 -1.9562 33 1 3.2598 5.5533 -1.9562 34 1 5.7445 6.7498 -0.9161 35 1 5.7585 6.5355 -3.3365 36 1 4.1723 7.3430 -3.3375 37 1 6.0813 9.1286 -5.9316 38 1 5.1345 2.5750 0.0008 39 1 3.4893 -0.5801 2.0783 40 1 4.5407 -1.8102 1.6266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581246292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:02 Heat of formation + Delta-G solvation = -92.651061 kcal Electronic energy + Delta-G solvation = -23469.548455 eV Core-core repulsion = 19797.418986 eV Total energy + Delta-G solvation = -3672.129469 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66294 -38.34045 -37.10439 -35.88577 -35.63786 -33.39062 -33.04484 -31.89972 -31.50561 -28.76597 -27.50975 -25.65525 -23.71679 -22.77372 -21.40683 -21.13329 -19.60596 -18.87405 -17.76518 -17.52730 -16.88080 -16.39651 -16.23121 -15.90692 -15.44782 -15.02734 -14.84002 -14.65708 -14.39909 -14.27100 -13.56688 -13.12625 -13.00446 -12.53209 -12.29588 -12.24519 -12.18049 -12.11215 -12.00996 -11.98756 -11.56700 -11.41290 -11.07546 -10.88310 -10.75534 -10.66872 -10.64478 -10.50815 -9.91419 -9.71026 -9.21542 -8.50795 -8.47605 -7.33019 -6.02524 -4.04973 0.26509 0.58481 1.03481 2.67347 2.92940 3.20075 3.34271 3.38002 3.40967 3.53301 4.22873 4.40025 4.43392 4.64461 4.72333 4.77263 4.81430 5.05772 5.10284 5.15205 5.27807 5.33158 5.40235 5.56553 5.63119 5.76168 5.79612 5.91376 5.94768 6.09631 6.34322 6.45136 6.49131 6.77502 6.79716 7.24397 7.42083 7.77512 8.12350 8.37155 8.59885 9.03907 9.59905 11.08598 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002563 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.277202 B =10922.389724 C =11544.207919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.209 3.791 4 C -0.224 4.224 5 C -0.017 4.017 6 C -0.123 4.123 7 C -0.078 4.078 8 C 0.062 3.938 9 N -0.691 5.691 10 C 0.194 3.806 11 C -0.516 4.516 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.901 3.099 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.017 3.983 20 C -0.702 4.702 21 S 2.710 3.290 22 N -1.248 6.248 23 O -0.955 6.955 24 O -0.967 6.967 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.329 0.671 35 H -0.013 1.013 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.152 0.848 39 H 0.415 0.585 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 -20.628 16.285 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.161 3.839 4 C -0.244 4.244 5 C -0.035 4.035 6 C -0.125 4.125 7 C -0.116 4.116 8 C -0.068 4.068 9 N -0.322 5.322 10 C 0.067 3.933 11 C -0.555 4.555 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.002 4.002 20 C -0.790 4.790 21 S 2.798 3.202 22 N -0.921 5.921 23 O -0.944 6.944 24 O -0.956 6.956 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.005 0.995 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.169 0.831 39 H 0.241 0.759 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.566 -20.635 15.264 28.152 hybrid contribution 0.195 0.800 0.155 0.838 sum -11.371 -19.835 15.419 27.577 Atomic orbital electron populations 1.23194 0.76993 1.04718 1.01949 1.86113 1.22739 1.26087 1.87428 1.18325 0.90419 0.85017 0.90114 1.21318 1.00392 0.92136 1.10527 1.21285 0.94295 0.97464 0.90439 1.20073 0.93669 0.95894 1.02815 1.20638 1.00609 0.91568 0.98745 1.21885 0.99560 0.91493 0.93864 1.60700 1.29206 1.23531 1.18729 1.19553 0.96082 0.94702 0.82966 1.21148 1.38093 1.03559 0.92666 0.91970 1.25000 0.96061 0.98187 0.95360 1.69950 1.47641 1.38817 0.97324 0.86525 0.79932 0.83821 0.76890 1.20221 1.21340 1.20165 1.20824 1.00831 0.89446 0.89134 1.29688 1.03498 1.18978 1.26831 1.01305 0.73166 0.73067 0.72697 1.52980 1.62403 1.37795 1.38964 1.93608 1.79525 1.66074 1.55232 1.93603 1.33135 1.82694 1.86156 0.92097 0.91890 0.87525 0.84476 0.84475 0.89910 0.90814 0.96092 0.91748 0.85465 0.99503 0.95476 0.92816 0.83060 0.75890 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.93 9.29 -29.11 -0.27 -3.20 16 3 C 0.21 2.22 6.63 -39.22 -0.26 1.96 16 4 C -0.22 -2.12 9.04 -39.43 -0.36 -2.47 16 5 C -0.02 -0.17 9.69 -39.60 -0.38 -0.56 16 6 C -0.12 -1.49 5.13 -104.60 -0.54 -2.02 16 7 C -0.08 -1.03 5.60 -27.89 -0.16 -1.19 16 8 C 0.06 1.09 5.67 -3.83 -0.02 1.07 16 9 N -0.69 -14.77 6.49 -115.06 -0.75 -15.52 16 10 C 0.19 5.16 5.44 -4.97 -0.03 5.13 16 11 C -0.52 -14.78 9.32 -34.44 -0.32 -15.10 16 12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.21 13.28 55.43 0.74 -26.47 16 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.02 0.21 9.20 -39.61 -0.36 -0.16 16 20 C -0.70 -8.15 5.89 -39.43 -0.23 -8.38 16 21 S 2.71 30.84 5.87 -107.50 -0.63 30.21 16 22 N -1.25 -8.43 9.55 60.35 0.58 -7.86 16 23 O -0.96 -14.00 17.30 -62.48 -1.08 -15.08 16 24 O -0.97 -13.75 16.97 -57.17 -0.97 -14.72 16 25 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 26 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 27 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.14 0.89 6.30 -52.49 -0.33 0.56 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.33 6.64 8.72 -39.29 -0.34 6.30 16 35 H -0.01 -0.36 8.14 -51.93 -0.42 -0.79 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.15 1.80 7.33 -52.48 -0.38 1.42 16 39 H 0.41 1.92 8.92 -34.47 -0.31 1.61 16 40 H 0.42 1.99 8.96 -34.47 -0.31 1.68 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -37.31 353.11 -9.24 -46.55 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.39 Total: 3.03 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.77 Total: -19.10 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.57 Total: -49.84 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -2.32 Total: -33.00 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 30.84 SS G_CDS: -0.63 Total: 30.21 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.31 -9.24 -46.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581246292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.101 kcal (2) G-P(sol) polarization free energy of solvation -37.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds