Wall clock time and date at job start Tue Mar 31 2020 04:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38754 * 120.05516 * 359.72833 * 3 2 1 5 5 C 1.38132 * 119.94111 * 179.74499 * 4 3 2 6 6 C 1.38289 * 120.05426 * 0.50680 * 5 4 3 7 7 C 1.50701 * 119.94211 * 179.74593 * 6 5 4 8 8 C 1.52992 * 109.47152 * 270.02113 * 7 6 5 9 9 N 1.46897 * 109.47165 * 179.97438 * 8 7 6 10 10 C 1.46903 * 111.00019 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47002 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00051 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99556 * 180.02562 * 11 10 9 14 14 N 1.31504 * 120.00429 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99554 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47321 * 59.99867 * 15 13 11 17 17 H 1.48497 * 109.47017 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46938 * 299.99635 * 15 13 11 19 19 C 1.38241 * 120.11132 * 359.76692 * 6 5 4 20 20 C 1.38169 * 120.05726 * 359.97438 * 19 6 5 21 21 S 1.76208 * 120.02650 * 179.97438 * 20 19 6 22 22 N 1.65606 * 107.21401 * 115.02190 * 21 20 19 23 23 O 1.42095 * 106.39880 * 228.56078 * 21 20 19 24 24 O 1.42102 * 106.40123 * 1.48336 * 21 20 19 25 25 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.03298 * 359.97012 * 4 3 2 29 29 H 1.07996 * 119.97076 * 180.25178 * 5 4 3 30 30 H 1.09001 * 109.47018 * 30.02039 * 7 6 5 31 31 H 1.08996 * 109.46847 * 150.01677 * 7 6 5 32 32 H 1.09008 * 109.47337 * 300.00160 * 8 7 6 33 33 H 1.09005 * 109.47351 * 60.00074 * 8 7 6 34 34 H 1.00901 * 111.00135 * 56.04970 * 9 8 7 35 35 H 1.08998 * 109.46956 * 300.00143 * 10 9 8 36 36 H 1.08996 * 109.47148 * 60.00170 * 10 9 8 37 37 H 0.97004 * 120.00469 * 180.02562 * 14 13 11 38 38 H 1.08005 * 119.97232 * 180.02562 * 19 6 5 39 39 H 0.96991 * 120.00140 * 359.97438 * 22 21 20 40 40 H 0.96996 * 119.99422 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9210 3.6048 -0.0004 6 6 3.3021 3.6757 0.0001 7 6 3.9863 5.0185 0.0001 8 6 4.2178 5.4729 -1.4423 9 7 4.8842 6.7820 -1.4423 10 6 5.1237 7.2509 -2.8137 11 6 5.8076 8.5932 -2.7734 12 1 6.0414 9.0518 -1.8240 13 6 6.1349 9.2356 -3.9487 14 7 5.8507 8.6768 -5.1047 15 14 6.9833 10.8991 -3.8988 16 1 8.2799 10.7723 -3.1861 17 1 7.2243 11.3736 -5.2851 18 1 6.1196 11.8740 -3.1855 19 6 4.0561 2.5170 0.0000 20 6 3.4311 1.2847 0.0001 21 16 4.3930 -0.1917 -0.0007 22 7 4.1006 -0.9678 1.4327 23 8 3.8555 -1.0201 -1.0225 24 8 5.7538 0.2160 0.0340 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2129 2.3204 -0.0106 29 1 1.3342 4.5114 -0.0007 30 1 3.3583 5.7462 0.5140 31 1 4.9441 4.9381 0.5140 32 1 4.8458 4.7451 -1.9562 33 1 3.2598 5.5533 -1.9562 34 1 5.7445 6.7498 -0.9161 35 1 5.7585 6.5355 -3.3365 36 1 4.1723 7.3430 -3.3375 37 1 6.0813 9.1286 -5.9316 38 1 5.1345 2.5750 0.0008 39 1 3.4893 -0.5801 2.0783 40 1 4.5407 -1.8102 1.6266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581246292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:01 Heat of formation + Delta-G solvation = -123.619222 kcal Electronic energy + Delta-G solvation = -23470.891335 eV Core-core repulsion = 19797.418986 eV Total energy + Delta-G solvation = -3673.472349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42037 -39.18223 -38.11989 -37.25001 -36.90964 -34.89191 -34.05953 -33.21034 -32.46965 -29.96218 -28.49032 -27.18040 -24.59684 -24.17798 -23.15907 -22.23544 -20.48004 -19.62805 -18.58017 -18.47787 -18.36381 -17.71647 -16.89936 -16.81927 -16.66687 -16.45363 -16.24650 -15.70363 -15.53459 -15.20133 -14.81477 -14.60961 -14.11920 -13.91476 -13.58717 -13.42456 -13.22466 -13.16799 -13.06459 -12.92656 -12.87291 -12.72520 -12.58727 -12.39071 -12.07175 -12.03155 -11.85048 -11.56885 -11.33093 -11.31461 -10.66533 -10.53143 -9.37060 -9.17375 -8.23150 -6.35220 -0.59996 -0.27359 0.19382 1.41619 1.45609 1.53631 2.03753 2.12737 2.34141 2.40349 2.67917 3.10106 3.35752 3.54812 3.73515 3.94027 4.07182 4.09271 4.26725 4.33556 4.35668 4.39596 4.46585 4.61037 4.65481 4.75757 4.88401 4.95749 5.05566 5.06672 5.17040 5.25249 5.26812 5.48073 5.55023 5.60419 5.99948 6.08930 6.34851 6.40654 6.70109 6.87741 7.36048 8.88497 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002563 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.277202 B =10922.389724 C =11544.207919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.210 3.790 4 C -0.219 4.219 5 C -0.016 4.016 6 C -0.138 4.138 7 C -0.063 4.063 8 C 0.062 3.938 9 N -0.686 5.686 10 C 0.206 3.794 11 C -0.538 4.538 12 H 0.068 0.932 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.976 3.024 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.002 3.998 20 C -0.712 4.712 21 S 2.726 3.274 22 N -1.228 6.228 23 O -0.992 6.992 24 O -1.001 7.001 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.124 0.876 28 H 0.171 0.829 29 H 0.157 0.843 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.009 0.991 33 H 0.058 0.942 34 H 0.337 0.663 35 H -0.043 1.043 36 H 0.000 1.000 37 H 0.265 0.735 38 H 0.145 0.855 39 H 0.427 0.573 40 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.010 -20.292 18.079 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.236 6.236 3 C 0.161 3.839 4 C -0.238 4.238 5 C -0.034 4.034 6 C -0.140 4.140 7 C -0.101 4.101 8 C -0.067 4.067 9 N -0.317 5.317 10 C 0.079 3.921 11 C -0.576 4.576 12 H 0.086 0.914 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.800 3.200 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.017 4.017 20 C -0.802 4.802 21 S 2.816 3.184 22 N -0.908 5.908 23 O -0.981 6.981 24 O -0.991 6.991 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.188 0.812 29 H 0.175 0.825 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.154 0.846 35 H -0.025 1.025 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.257 0.743 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -12.923 -20.337 17.099 29.546 hybrid contribution 0.484 0.568 -0.368 0.832 sum -12.439 -19.769 16.730 28.731 Atomic orbital electron populations 1.23590 0.74802 1.06515 1.03354 1.86119 1.25022 1.25510 1.86951 1.18481 0.90183 0.86041 0.89192 1.21668 1.02026 0.91113 1.09023 1.21562 0.93658 0.98820 0.89369 1.19974 0.94569 0.94873 1.04583 1.20451 1.01589 0.92598 0.95437 1.21963 0.98394 0.89292 0.97074 1.60577 1.29575 1.25967 1.15560 1.19214 0.93772 0.93947 0.85215 1.21538 1.38476 1.04403 0.93165 0.91372 1.26014 0.96586 1.02528 0.94798 1.70092 1.48674 1.40739 0.98133 0.85335 0.79029 0.78444 0.77182 1.19020 1.20887 1.19049 1.20844 1.00803 0.90058 0.90028 1.29547 1.04309 1.18281 1.28018 1.00442 0.72273 0.72719 0.72994 1.52515 1.62641 1.37987 1.37651 1.93564 1.79920 1.67158 1.57466 1.93561 1.35371 1.83236 1.86895 0.89717 0.91383 0.85755 0.81163 0.82494 0.88724 0.90089 0.97292 0.92307 0.84574 1.02523 0.98230 0.92583 0.83702 0.74302 0.73791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.32 -5.45 9.29 -83.12 -0.77 -6.22 16 3 C 0.21 4.09 6.63 22.51 0.15 4.24 16 4 C -0.22 -3.54 9.04 22.37 0.20 -3.34 16 5 C -0.02 -0.30 9.69 22.26 0.22 -0.08 16 6 C -0.14 -3.23 5.13 -19.85 -0.10 -3.33 16 7 C -0.06 -1.62 5.60 29.85 0.17 -1.46 16 8 C 0.06 2.22 5.67 86.30 0.49 2.70 16 9 N -0.69 -29.68 6.49 -517.93 -3.36 -33.04 16 10 C 0.21 11.37 5.44 85.56 0.47 11.83 16 11 C -0.54 -31.12 9.32 25.60 0.24 -30.88 16 12 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 13 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 14 N -0.94 -57.72 13.28 21.45 0.28 -57.43 16 15 Si 0.98 44.61 29.54 68.60 2.03 46.63 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 C 0.00 0.05 9.20 22.25 0.20 0.25 16 20 C -0.71 -16.26 5.89 22.37 0.13 -16.13 16 21 S 2.73 62.52 5.87 -56.49 -0.33 62.19 16 22 N -1.23 -15.36 9.55 37.02 0.35 -15.00 16 23 O -0.99 -29.43 17.30 -122.93 -2.13 -31.55 16 24 O -1.00 -29.37 16.97 -128.00 -2.17 -31.54 16 25 H 0.08 0.27 7.67 -2.39 -0.02 0.25 16 26 H 0.07 0.48 7.65 -2.38 -0.02 0.46 16 27 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.17 1.53 6.30 -2.91 -0.02 1.51 16 29 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 31 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 32 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.34 13.66 8.72 -89.69 -0.78 12.88 16 35 H -0.04 -2.57 8.14 -2.39 -0.02 -2.59 16 36 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.15 3.62 7.33 -2.91 -0.02 3.60 16 39 H 0.43 3.26 8.92 -96.75 -0.86 2.40 16 40 H 0.43 3.59 8.96 -96.75 -0.87 2.72 16 Total: -1.00 -81.74 353.11 -3.78 -85.52 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -1.42 Total: 15.05 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.74 Total: -34.60 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -2.72 Total: -105.48 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: -5.07 Total: -69.32 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 62.52 SS G_CDS: -0.33 Total: 62.19 kcal Total: -81.74 -3.78 -85.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581246292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.100 kcal (2) G-P(sol) polarization free energy of solvation -81.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds