Wall clock time and date at job start Tue Mar 31 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.46665 * 60.00215 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21574 * 120.00257 * 359.97438 * 16 15 14 18 18 C 1.47720 * 119.99966 * 179.97438 * 16 15 14 19 19 C 1.41501 * 126.51703 * 179.71170 * 18 16 15 20 20 C 1.35365 * 105.50172 * 179.90125 * 19 18 16 21 21 N 1.35036 * 107.22788 * 0.35801 * 20 19 18 22 22 C 1.46500 * 124.88397 * 179.75914 * 21 20 19 23 23 F 1.39893 * 109.47211 * 300.02765 * 22 21 20 24 24 F 1.39903 * 109.46816 * 60.02584 * 22 21 20 25 25 N 1.28466 * 110.23124 * 359.76312 * 21 20 19 26 26 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 27 27 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 29 29 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 30 30 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 31 31 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 32 32 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 33 33 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 34 34 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 35 35 H 1.08000 * 127.24744 * 0.02562 * 19 18 16 36 36 H 1.08004 * 126.38485 * 180.08220 * 20 19 18 37 37 H 1.08994 * 109.47054 * 180.02562 * 22 21 20 38 38 H 1.09002 * 110.36518 * 322.70049 * 26 9 7 39 39 H 1.08995 * 110.36673 * 84.91158 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9599 -8.5957 0.3056 18 6 3.9174 -8.4379 -0.9589 19 6 4.4425 -9.7350 -0.7495 20 6 5.6003 -9.7740 -1.4497 21 7 5.7557 -8.5662 -2.0333 22 6 6.8879 -8.1848 -2.8811 23 9 8.0753 -8.2909 -2.1490 24 9 6.9467 -9.0347 -3.9908 25 7 4.7679 -7.7998 -1.7380 26 6 1.9333 -3.7312 -0.0005 27 1 -0.4849 0.8401 -0.0004 28 1 -0.5503 -2.0832 0.9095 29 1 -0.5617 -2.0533 -0.8759 30 1 -1.3017 -4.2523 -0.6628 31 1 -0.6290 -4.4190 0.9906 32 1 1.0780 -6.1265 0.9518 33 1 0.1986 -6.7069 -0.4828 34 1 2.8421 -6.0795 -1.2533 35 1 4.0095 -10.5278 -0.1575 36 1 6.2763 -10.6131 -1.5238 37 1 6.7594 -7.1561 -3.2177 38 1 2.8303 -3.7416 -0.6198 39 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028567973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:12 Heat of formation + Delta-G solvation = -20.410196 kcal Electronic energy + Delta-G solvation = -25394.990267 eV Core-core repulsion = 21204.445762 eV Total energy + Delta-G solvation = -4190.544505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.97496 -48.06009 -43.03623 -39.48129 -37.61201 -34.69454 -33.35609 -32.48268 -31.27221 -29.82251 -28.40761 -27.07189 -25.54703 -24.08615 -22.75912 -22.03835 -20.55183 -19.92218 -19.67912 -19.13427 -18.52784 -18.09648 -17.44104 -16.73686 -16.05876 -15.90390 -15.27841 -14.92895 -14.79857 -14.65172 -14.41271 -14.37013 -14.22724 -13.96479 -13.60469 -13.32975 -13.04573 -12.69246 -12.33575 -12.00094 -11.75275 -11.48818 -11.36886 -10.89641 -10.81265 -10.52763 -10.20456 -10.05080 -9.96424 -9.90658 -9.82973 -9.67665 -9.65528 -8.98765 -8.60150 -6.82649 -5.71170 -3.04534 1.05641 1.25004 1.71488 2.90413 3.10785 3.25308 3.39486 3.44837 3.47435 3.50110 3.96502 4.20916 4.28557 4.49366 4.77283 5.10014 5.19019 5.24940 5.33800 5.43027 5.54356 5.68326 5.84673 5.90130 6.02158 6.05001 6.06152 6.35219 6.40392 6.51386 6.54301 6.68725 6.92170 7.19326 7.56374 7.57162 7.64120 7.83339 8.13825 8.26429 9.22521 9.82910 10.49025 11.40669 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.002867 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.059828 B = 9764.758125 C =11310.578515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.132 3.868 15 N -0.708 5.708 16 C 0.600 3.400 17 O -0.532 6.532 18 C 0.016 3.984 19 C -0.168 4.168 20 C -0.003 4.003 21 N -0.348 5.348 22 C 0.497 3.503 23 F -0.174 7.174 24 F -0.174 7.174 25 N -0.247 5.247 26 C 0.142 3.858 27 H 0.251 0.749 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.409 0.591 35 H 0.171 0.829 36 H 0.187 0.813 37 H 0.175 0.825 38 H 0.036 0.964 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.503 -19.992 -6.219 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.358 5.358 16 C 0.383 3.617 17 O -0.406 6.406 18 C -0.148 4.148 19 C -0.195 4.195 20 C -0.143 4.143 21 N -0.145 5.145 22 C 0.363 3.637 23 F -0.155 7.155 24 F -0.156 7.156 25 N -0.080 5.080 26 C 0.015 3.985 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.244 0.756 35 H 0.188 0.812 36 H 0.204 0.796 37 H 0.191 0.809 38 H 0.054 0.946 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.284 -19.200 -6.331 23.153 hybrid contribution 0.841 0.229 0.060 0.873 sum 12.124 -18.972 -6.271 23.372 Atomic orbital electron populations 1.69977 1.04871 1.24880 1.57190 1.24806 0.95730 0.97671 1.02326 0.86049 0.78690 0.83811 0.77238 1.20542 1.21773 1.21758 1.19105 0.90445 0.82444 1.43621 0.90444 1.44495 1.01759 0.99873 1.87171 1.21149 0.84312 0.88175 1.01116 1.22861 0.95393 0.99367 0.99710 1.22622 0.98682 0.91874 1.00618 0.90114 1.21489 0.84782 0.93942 0.98942 1.45948 1.25137 1.13088 1.51654 1.16797 0.82701 0.81904 0.80280 1.90811 1.53243 1.58801 1.37791 1.22271 0.96958 0.94405 1.01204 1.21915 0.95573 0.97915 1.04143 1.23000 1.00907 0.90728 0.99622 1.46522 1.18275 1.10732 1.38998 1.21215 0.72850 0.95012 0.74591 1.93160 1.46896 1.97161 1.78281 1.93158 1.95676 1.74852 1.51895 1.73527 0.96845 1.21404 1.16215 1.21571 0.93961 0.86128 0.96796 0.93820 0.93906 0.93521 0.91934 0.92136 0.90972 0.91274 0.75607 0.81161 0.79554 0.80884 0.94619 0.96277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 10.31 55.49 0.57 -26.48 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.61 -15.38 3.39 -170.05 -0.58 -15.96 16 10 C 0.18 4.26 5.37 -3.06 -0.02 4.24 16 11 C -0.13 -2.42 6.42 -24.90 -0.16 -2.58 16 12 C -0.12 -1.95 3.11 -88.46 -0.27 -2.22 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C 0.13 1.89 5.12 -4.05 -0.02 1.87 16 15 N -0.71 -9.57 5.40 -61.29 -0.33 -9.91 16 16 C 0.60 8.59 7.83 -12.39 -0.10 8.49 16 17 O -0.53 -9.00 16.93 5.30 0.09 -8.91 16 18 C 0.02 0.20 7.13 -82.76 -0.59 -0.39 16 19 C -0.17 -1.69 10.81 -39.36 -0.43 -2.12 16 20 C 0.00 -0.02 11.33 -17.17 -0.19 -0.22 16 21 N -0.35 -3.10 3.56 -66.62 -0.24 -3.34 16 22 C 0.50 2.96 6.24 59.85 0.37 3.33 16 23 F -0.17 -1.18 17.46 2.25 0.04 -1.15 16 24 F -0.17 -1.14 17.46 2.25 0.04 -1.10 16 25 N -0.25 -2.76 11.67 33.42 0.39 -2.37 16 26 C 0.14 2.84 6.41 -2.52 -0.02 2.83 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 29 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 32 H 0.07 1.10 8.10 -51.93 -0.42 0.67 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.41 5.14 8.06 -40.82 -0.33 4.81 16 35 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.19 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.17 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -33.68 342.65 -6.41 -40.09 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.86 Total: 0.56 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.67 Total: 6.38 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.18 Total: -58.05 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.08 Total: -2.25 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.68 -6.41 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028567973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.676 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds