Wall clock time and date at job start Tue Mar 31 2020 04:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99675 * 2 1 4 4 N 1.34777 * 120.00359 * 179.97438 * 2 1 3 5 5 C 1.47673 * 134.45627 * 180.02562 * 4 2 1 6 6 C 1.53441 * 85.97729 * 155.74587 * 5 4 2 7 7 C 1.47662 * 134.45559 * 0.06129 * 4 2 1 8 8 C 1.52900 * 113.55533 * 137.63479 * 6 5 4 9 9 N 1.47340 * 108.04656 * 179.97438 * 8 6 5 10 10 C 1.34777 * 121.04937 * 131.57983 * 9 8 6 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72576 * 10 9 8 13 13 S 1.80997 * 109.47151 * 180.27780 * 12 10 9 14 14 C 1.76196 * 100.00314 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.38799 * 120.00626 * 179.97438 * 14 13 12 17 17 N 1.31633 * 119.99674 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00584 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47157 * 59.99781 * 18 16 14 20 20 H 1.48496 * 109.47271 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46802 * 300.00045 * 18 16 14 22 22 C 1.47122 * 117.89335 * 311.85960 * 9 8 6 23 23 C 1.52796 * 108.95677 * 51.92654 * 22 9 8 24 24 O 1.42481 * 113.81016 * 268.76083 * 6 5 4 25 25 H 1.09002 * 109.46670 * 240.00026 * 1 2 3 26 26 H 1.08999 * 109.47509 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46800 * 120.00737 * 1 2 3 28 28 H 1.08989 * 113.79199 * 41.47564 * 5 4 2 29 29 H 1.09001 * 113.89498 * 270.02606 * 5 4 2 30 30 H 1.09000 * 113.79705 * 89.98618 * 7 4 2 31 31 H 1.09003 * 113.79447 * 318.51306 * 7 4 2 32 32 H 1.09001 * 109.74539 * 60.31741 * 8 6 5 33 33 H 1.08999 * 109.78578 * 299.61702 * 8 6 5 34 34 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 35 35 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 36 36 H 0.97003 * 120.00297 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.59655 * 171.75576 * 22 9 8 38 38 H 1.09000 * 109.59058 * 292.20832 * 22 9 8 39 39 H 1.09003 * 109.56300 * 186.05162 * 23 22 9 40 40 H 1.08996 * 109.37597 * 66.02984 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6110 -1.5357 0.0012 6 6 3.1582 -2.8601 0.6300 7 6 1.7854 -2.5898 0.0000 8 6 3.8652 -4.0853 0.0497 9 7 3.3434 -5.2807 0.7351 10 6 2.9399 -6.3612 0.0378 11 8 3.0037 -6.3599 -1.1734 12 6 2.4158 -7.5735 0.7634 13 16 1.9664 -8.8492 -0.4394 14 6 1.4034 -10.1134 0.6511 15 1 1.4135 -9.9497 1.7186 16 6 0.9458 -11.3193 0.1383 17 7 0.9320 -11.5183 -1.1628 18 14 0.3482 -12.6593 1.2944 19 1 -0.7968 -12.1509 2.0916 20 1 -0.0850 -13.8388 0.5032 21 1 1.4510 -13.0531 2.2076 22 6 3.2708 -5.2550 2.2043 23 6 2.5268 -3.9943 2.6425 24 8 3.1484 -2.8466 2.0547 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 4.2230 -0.9218 0.6618 29 1 4.0390 -1.6457 -0.9952 30 1 1.6682 -3.0134 -0.9974 31 1 0.9471 -2.8134 0.6599 32 1 4.9393 -4.0042 0.2167 33 1 3.6631 -4.1562 -1.0190 34 1 3.1866 -7.9590 1.4309 35 1 1.5365 -7.2969 1.3452 36 1 0.6126 -12.3612 -1.5212 37 1 2.7357 -6.1357 2.5593 38 1 4.2784 -5.2445 2.6199 39 1 2.5604 -3.9098 3.7287 40 1 1.4892 -4.0543 2.3143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068314639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:34 Heat of formation + Delta-G solvation = -63.670707 kcal Electronic energy + Delta-G solvation = -24104.956390 eV Core-core repulsion = 20434.083603 eV Total energy + Delta-G solvation = -3670.872786 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.113 amu Computer time = 3.22 seconds Orbital eigenvalues (eV) -41.43549 -39.59280 -38.51082 -36.88540 -34.80179 -32.50086 -32.01452 -30.38656 -29.59383 -28.10839 -26.74664 -25.86975 -25.37951 -23.68160 -20.79501 -19.37827 -19.30863 -17.86854 -17.38343 -17.04199 -16.89813 -16.22177 -15.93938 -15.56159 -15.36252 -14.97420 -14.87127 -14.78021 -14.15397 -14.02737 -13.55526 -13.38166 -13.18655 -13.00508 -12.75131 -12.55515 -12.40027 -12.35715 -12.13980 -11.89603 -11.58745 -11.11991 -11.09674 -10.94617 -10.82418 -10.46861 -10.07022 -9.89748 -9.54312 -9.13024 -9.09332 -8.62960 -8.33183 -6.59374 -6.28734 -4.00493 2.35116 2.45566 2.66268 2.86162 3.04576 3.17904 3.18251 3.23908 3.44094 3.89690 4.12386 4.13836 4.27711 4.50720 4.70447 4.74623 4.78699 4.90024 4.97732 5.00171 5.06153 5.06890 5.11439 5.18645 5.23459 5.31302 5.35692 5.41857 5.43638 5.55827 5.61869 5.63485 5.73616 5.98240 6.29492 6.72145 7.30753 7.34136 7.51948 7.86432 8.27382 8.34908 9.16537 10.78568 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002810 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.416382 B = 9960.537672 C =10079.011595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.537 3.463 3 O -0.549 6.549 4 N -0.640 5.640 5 C 0.126 3.874 6 C 0.069 3.931 7 C 0.082 3.918 8 C 0.101 3.899 9 N -0.624 5.624 10 C 0.538 3.462 11 O -0.512 6.512 12 C -0.152 4.152 13 S -0.059 6.059 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.274 1.274 22 C 0.073 3.927 23 C 0.045 3.955 24 O -0.346 6.346 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.270 0.730 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 17.603 7.004 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.328 3.672 3 O -0.427 6.427 4 N -0.377 5.377 5 C 0.003 3.997 6 C 0.027 3.973 7 C -0.041 4.041 8 C -0.022 4.022 9 N -0.361 5.361 10 C 0.327 3.673 11 O -0.385 6.385 12 C -0.302 4.302 13 S 0.168 5.832 14 C -0.685 4.685 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.050 4.050 23 C -0.032 4.032 24 O -0.264 6.264 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.415 18.375 5.149 19.235 hybrid contribution -0.642 -1.226 2.135 2.544 sum 1.773 17.150 7.284 18.717 Atomic orbital electron populations 1.21862 0.91164 1.05369 1.04369 1.20483 0.90257 0.81526 0.74963 1.90725 1.70916 1.30415 1.50598 1.49921 1.08503 1.05450 1.73790 1.23100 0.84524 0.91240 1.00841 1.23040 0.95698 0.95403 0.83191 1.23850 0.98747 0.79352 1.02144 1.22003 0.98342 0.82653 0.99250 1.48188 1.65972 1.15423 1.06562 1.20378 0.76283 0.83017 0.87663 1.90707 1.53164 1.81009 1.13651 1.23560 1.03469 0.98183 1.05013 1.85423 1.82528 1.07589 1.07657 1.22802 1.49791 1.01487 0.94468 0.90959 1.24991 0.95073 0.97848 0.95593 1.70001 1.43799 1.25334 1.11077 0.86221 0.79131 0.80094 0.80053 1.19916 1.20780 1.19906 1.22302 1.02300 0.99819 0.80604 1.23008 0.96343 0.84787 0.99064 1.87970 1.79739 1.42334 1.16389 0.89463 0.88852 0.89351 0.88693 0.87753 0.87963 0.89347 0.90185 0.87335 0.89102 0.89220 0.92049 0.87958 0.90334 0.87065 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 10.07 36.01 0.36 -0.92 16 2 C 0.54 6.24 8.17 -10.98 -0.09 6.15 16 3 O -0.55 -8.61 17.81 5.56 0.10 -8.51 16 4 N -0.64 -6.55 3.61 -180.79 -0.65 -7.20 16 5 C 0.13 1.13 8.23 -3.18 -0.03 1.10 16 6 C 0.07 0.63 1.21 -90.31 -0.11 0.52 16 7 C 0.08 0.73 7.75 -3.18 -0.02 0.70 16 8 C 0.10 1.03 5.78 -3.63 -0.02 1.01 16 9 N -0.62 -7.58 3.03 -172.69 -0.52 -8.10 16 10 C 0.54 9.09 7.73 -10.98 -0.08 9.00 16 11 O -0.51 -10.53 15.36 5.55 0.09 -10.44 16 12 C -0.15 -2.80 4.53 36.01 0.16 -2.64 16 13 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 14 C -0.54 -14.63 9.50 30.94 0.29 -14.33 16 15 H 0.07 1.85 7.80 -52.48 -0.41 1.44 16 16 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 17 N -0.87 -25.36 13.22 55.49 0.73 -24.63 16 18 Si 0.92 20.65 29.55 -169.99 -5.02 15.62 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 22 C 0.07 0.67 6.47 -3.81 -0.02 0.64 16 23 C 0.05 0.36 6.87 37.05 0.25 0.61 16 24 O -0.35 -3.38 10.52 -35.23 -0.37 -3.76 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.90 8.14 -51.94 -0.42 0.47 16 29 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.10 0.89 7.94 -51.93 -0.41 0.47 16 31 H 0.09 0.73 7.27 -51.93 -0.38 0.35 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.20 6.91 -51.93 -0.36 0.84 16 34 H 0.09 1.56 8.00 -51.91 -0.42 1.14 16 35 H 0.09 1.49 7.68 -51.92 -0.40 1.10 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.10 0.90 6.03 -51.93 -0.31 0.59 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.47 7.19 -51.93 -0.37 0.10 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -36.07 349.00 -7.58 -43.65 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.57 Total: -1.97 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 0.60 Total: 3.81 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.44 Total: -39.93 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.19 Total: -22.71 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.07 -7.58 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068314639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.021 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds