Wall clock time and date at job start Tue Mar 31 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31126 * 126.55484 * 2 1 4 4 C 1.34492 * 105.61910 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.29014 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47222 * 345.05561 * 5 4 3 7 7 C 1.53007 * 109.47030 * 105.05148 * 5 4 3 8 8 N 1.46897 * 109.47351 * 225.05083 * 5 4 3 9 9 C 1.46899 * 111.00236 * 154.99790 * 8 5 4 10 10 C 1.52996 * 109.47570 * 180.02562 * 9 8 5 11 11 N 1.46494 * 109.47249 * 180.02562 * 10 9 8 12 12 C 1.34780 * 119.99766 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00221 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99808 * 180.02562 * 12 11 10 15 15 S 1.81002 * 109.47217 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00249 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99561 * 359.97438 * 16 15 14 18 18 C 1.38797 * 120.00350 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00082 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99585 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47352 * 89.99870 * 20 18 16 22 22 H 1.48505 * 109.46822 * 209.99764 * 20 18 16 23 23 H 1.48505 * 109.47226 * 329.99670 * 20 18 16 24 24 N 1.29948 * 107.42516 * 0.02562 * 4 3 2 25 25 O 1.21303 * 110.24669 * 359.97438 * 24 4 3 26 26 H 1.09003 * 109.47573 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47036 * 300.01785 * 1 2 3 28 28 H 1.09003 * 109.47076 * 60.01708 * 1 2 3 29 29 H 1.08994 * 109.46707 * 180.02562 * 7 5 4 30 30 H 1.08997 * 109.46766 * 299.99897 * 7 5 4 31 31 H 1.08998 * 109.46781 * 60.00142 * 7 5 4 32 32 H 1.00905 * 111.00057 * 31.04798 * 8 5 4 33 33 H 1.09003 * 109.47514 * 300.00685 * 9 8 5 34 34 H 1.09009 * 109.46799 * 60.00346 * 9 8 5 35 35 H 1.09006 * 109.47324 * 300.00259 * 10 9 8 36 36 H 1.08995 * 109.47076 * 60.00177 * 10 9 8 37 37 H 0.97002 * 120.00322 * 359.97438 * 11 10 9 38 38 H 1.09007 * 109.47466 * 299.99772 * 14 12 11 39 39 H 1.09003 * 109.47780 * 59.99694 * 14 12 11 40 40 H 0.97010 * 119.99925 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5440 0.5727 0.0006 5 6 4.8111 1.3885 0.0003 6 1 4.5792 2.4199 -0.2655 7 6 5.4425 1.3506 1.3935 8 7 5.7527 0.8303 -0.9793 9 6 6.6950 1.8555 -1.4474 10 6 7.6570 1.2380 -2.4643 11 7 8.5969 2.2603 -2.9306 12 6 9.5433 1.9427 -3.8362 13 8 9.6169 0.8106 -4.2647 14 6 10.5106 2.9942 -4.3154 15 16 11.6486 2.2637 -5.5186 16 6 12.6362 3.6722 -5.9001 17 1 12.4339 4.6191 -5.4216 18 6 13.6741 3.5648 -6.8153 19 7 14.4121 4.6168 -7.0999 20 14 14.0234 1.9271 -7.6433 21 1 13.2368 1.8296 -8.8990 22 1 15.4716 1.8303 -7.9575 23 1 13.6396 0.8196 -6.7315 24 7 3.4645 -0.7243 0.0003 25 8 2.3028 -1.0736 0.0002 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8899 28 1 -0.3633 0.5136 -0.8902 29 1 6.3587 1.9410 1.3933 30 1 4.7438 1.7649 2.1203 31 1 5.6744 0.3193 1.6593 32 1 5.2616 0.4099 -1.7541 33 1 6.1427 2.6691 -1.9177 34 1 7.2609 2.2428 -0.6000 35 1 8.2094 0.4243 -1.9943 36 1 7.0908 0.8511 -3.3115 37 1 8.5383 3.1657 -2.5875 38 1 9.9589 3.8083 -4.7856 39 1 11.0765 3.3808 -3.4678 40 1 15.1373 4.5418 -7.7399 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:58 Heat of formation + Delta-G solvation = 29.872899 kcal Electronic energy + Delta-G solvation = -22248.603146 eV Core-core repulsion = 18614.079466 eV Total energy + Delta-G solvation = -3634.523680 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.120 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.06777 -39.36047 -38.11767 -36.15515 -34.86403 -33.59067 -32.43782 -31.41436 -29.63318 -29.35516 -27.30287 -25.61930 -25.16141 -23.66874 -22.45787 -21.03401 -20.39436 -18.62298 -18.14104 -17.79212 -16.84833 -16.45815 -16.02777 -15.49769 -15.47592 -14.97011 -14.95938 -14.59135 -14.09175 -14.00751 -13.83314 -13.71712 -13.27677 -13.15036 -12.79162 -12.64116 -12.59109 -12.39503 -12.05390 -11.96615 -11.69487 -11.58964 -11.42034 -11.26179 -11.00349 -10.60922 -10.35725 -9.85627 -9.55731 -9.07025 -9.02759 -8.97465 -8.49822 -6.91687 -6.28756 -4.00543 0.68835 1.69468 2.34977 2.68168 2.94357 2.97057 3.24625 3.33722 3.47163 3.51498 3.62004 3.94614 4.32657 4.33676 4.51088 4.59946 4.66956 4.68616 4.74346 4.79226 4.86759 4.99794 5.10391 5.11123 5.22572 5.26027 5.30391 5.37002 5.49531 5.65476 5.76325 5.77214 5.82041 6.00720 6.32721 6.49552 6.73197 7.57736 7.72243 7.94229 8.41561 8.47819 9.17500 10.80405 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.039429 B = 0.001794 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.969357 B =15603.387261 C =15856.340775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.176 3.824 3 N -0.482 5.482 4 C 0.162 3.838 5 C 0.180 3.820 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.673 5.673 9 C 0.049 3.951 10 C 0.124 3.876 11 N -0.737 5.737 12 C 0.531 3.469 13 O -0.518 6.518 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 N -0.357 5.357 25 O 0.080 5.920 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.348 0.652 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.343 -5.919 18.244 35.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.044 4.044 3 N -0.217 5.217 4 C -0.111 4.111 5 C 0.069 3.931 6 H 0.096 0.904 7 C -0.196 4.196 8 N -0.307 5.307 9 C -0.081 4.081 10 C -0.001 4.001 11 N -0.392 5.392 12 C 0.317 3.683 13 O -0.392 6.392 14 C -0.274 4.274 15 S 0.085 5.915 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 N -0.063 5.063 25 O 0.019 5.981 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.831 -8.073 17.900 34.061 hybrid contribution -0.546 1.791 -0.403 1.915 sum -28.377 -6.282 17.496 33.924 Atomic orbital electron populations 1.20409 0.80098 1.05766 1.05746 1.28877 0.99010 0.80731 0.95831 1.71871 1.00122 1.29071 1.20590 1.25798 0.94943 0.88516 1.01892 1.19763 0.83238 0.94463 0.95607 0.90387 1.21817 1.00920 1.03702 0.93208 1.60416 1.19718 1.32113 1.18430 1.22201 0.94470 0.92942 0.98457 1.21110 0.90944 0.91531 0.96497 1.45839 1.33952 1.13688 1.45713 1.20273 0.80508 0.89455 0.78064 1.90710 1.71112 1.21578 1.55770 1.23277 0.99821 1.00446 1.03892 1.84809 1.36072 1.18718 1.51942 1.22321 1.18226 0.96070 1.30337 0.89380 1.24708 0.94378 0.97012 0.95186 1.69939 1.19172 1.29199 1.33368 0.86736 0.78468 0.84967 0.81692 1.19215 1.19920 1.15900 1.74728 0.96796 1.15433 1.19336 1.85361 1.11588 1.35833 1.65321 0.88347 0.87803 0.87774 0.90838 0.92018 0.91178 0.83315 0.94011 0.89628 0.90407 0.91749 0.76689 0.88491 0.88375 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 10.51 36.00 0.38 0.30 16 2 C 0.18 1.14 8.51 -13.06 -0.11 1.03 16 3 N -0.48 -4.32 11.55 -9.87 -0.11 -4.43 16 4 C 0.16 1.55 6.71 -156.37 -1.05 0.51 16 5 C 0.18 1.49 3.16 -68.86 -0.22 1.27 16 6 H 0.08 0.59 7.80 -51.93 -0.40 0.18 16 7 C -0.14 -1.02 9.40 37.16 0.35 -0.67 16 8 N -0.67 -5.94 6.30 -107.95 -0.68 -6.62 16 9 C 0.05 0.39 5.60 -3.83 -0.02 0.37 16 10 C 0.12 1.39 5.93 -4.05 -0.02 1.37 16 11 N -0.74 -9.21 5.56 -60.30 -0.33 -9.54 16 12 C 0.53 9.48 7.85 -10.98 -0.09 9.40 16 13 O -0.52 -11.38 15.86 5.56 0.09 -11.29 16 14 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 15 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 16 C -0.52 -15.11 10.04 30.94 0.31 -14.79 16 17 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 20 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 24 N -0.36 -3.73 12.15 30.90 0.38 -3.36 16 25 O 0.08 0.68 11.31 18.10 0.20 0.88 16 26 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 29 H 0.07 0.48 7.45 -51.93 -0.39 0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.35 3.22 8.35 -39.29 -0.33 2.89 16 33 H 0.04 0.30 8.06 -51.93 -0.42 -0.12 16 34 H 0.09 0.62 7.44 -51.92 -0.39 0.23 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 3.71 8.47 -40.82 -0.35 3.37 16 38 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -36.61 360.48 -6.96 -43.57 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.65 Total: 0.30 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.35 Total: -0.68 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.02 Total: -49.81 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.29 Total: -10.41 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.61 -6.96 -43.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.441 kcal (2) G-P(sol) polarization free energy of solvation -36.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds